Wall clock time and date at job start Tue Mar 31 2020 21:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46954 * 2 1 4 4 C 1.50700 * 109.46993 * 119.99844 * 2 1 3 5 5 O 1.21277 * 119.99962 * 119.99834 * 4 2 1 6 6 N 1.34779 * 119.99882 * 300.00211 * 4 2 1 7 7 C 1.46508 * 119.99727 * 179.97438 * 6 4 2 8 8 H 1.08997 * 112.84947 * 336.19467 * 7 6 4 9 9 C 1.53776 * 113.61221 * 107.50020 * 7 6 4 10 10 C 1.53775 * 87.08393 * 89.11491 * 9 7 6 11 11 H 1.08996 * 113.69476 * 270.87629 * 10 9 7 12 12 C 1.53000 * 113.61825 * 139.97637 * 10 9 7 13 13 N 1.46499 * 109.46840 * 87.50296 * 12 10 9 14 14 C 1.36936 * 120.00002 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00140 * 0.02562 * 14 13 12 16 16 C 1.38811 * 120.00367 * 180.02562 * 14 13 12 17 17 N 1.31619 * 119.99972 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00444 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47009 * 89.99860 * 18 16 14 20 20 H 1.48501 * 109.47104 * 209.99764 * 18 16 14 21 21 H 1.48504 * 109.46767 * 329.99904 * 18 16 14 22 22 C 1.53774 * 113.61242 * 204.99487 * 7 6 4 23 23 C 1.50700 * 109.46902 * 239.99564 * 2 1 3 24 24 C 1.38224 * 119.98950 * 299.72488 * 23 2 1 25 25 C 1.38187 * 120.04782 * 179.76373 * 24 23 2 26 26 C 1.38495 * 120.02856 * 0.51565 * 25 24 23 27 27 F 1.35094 * 120.01733 * 179.76360 * 26 25 24 28 28 C 1.38399 * 119.97118 * 359.73985 * 26 25 24 29 29 C 1.38443 * 119.94828 * 0.02562 * 28 26 25 30 30 F 1.35099 * 120.00884 * 180.02562 * 29 28 26 31 31 H 1.09001 * 109.47070 * 300.00565 * 1 2 3 32 32 H 1.09001 * 109.46975 * 59.99581 * 1 2 3 33 33 H 1.08995 * 109.47668 * 179.97438 * 1 2 3 34 34 H 0.96998 * 119.99958 * 359.97438 * 6 4 2 35 35 H 1.09005 * 113.62055 * 334.56345 * 9 7 6 36 36 H 1.08999 * 113.61331 * 203.66725 * 9 7 6 37 37 H 1.09002 * 109.47398 * 207.50622 * 12 10 9 38 38 H 1.09001 * 109.47194 * 327.50803 * 12 10 9 39 39 H 0.97000 * 120.00420 * 0.02562 * 13 12 10 40 40 H 0.96996 * 120.00586 * 180.02562 * 17 16 14 41 41 H 1.09006 * 113.61277 * 156.33445 * 22 7 6 42 42 H 1.09006 * 113.61790 * 25.43358 * 22 7 6 43 43 H 1.07994 * 119.97339 * 0.02670 * 24 23 2 44 44 H 1.08006 * 119.98848 * 180.25364 * 25 24 23 45 45 H 1.07995 * 120.02746 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 2.1945 -0.9408 3.6508 8 1 2.4374 -1.9872 3.4657 9 6 3.2975 -0.1734 4.3986 10 6 2.1729 0.5150 5.1899 11 1 1.8031 1.4273 4.7219 12 6 2.4909 0.6961 6.6755 13 7 3.2088 1.9581 6.8708 14 6 3.6008 2.3355 8.1275 15 1 3.3811 1.7025 8.9746 16 6 4.2805 3.5315 8.3127 17 7 4.5488 4.3027 7.2804 18 14 4.8159 4.0459 10.0268 19 1 6.1766 3.5176 10.2998 20 1 4.8333 5.5282 10.1160 21 1 3.8632 3.5010 11.0272 22 6 1.3116 -0.7234 4.8909 23 6 2.0323 -0.7105 -1.2304 24 6 1.7029 -2.0355 -1.4460 25 6 2.1588 -2.6868 -2.5763 26 6 2.9552 -2.0156 -3.4891 27 9 3.4047 -2.6539 -4.5917 28 6 3.2900 -0.6904 -3.2717 29 6 2.8287 -0.0376 -2.1414 30 9 3.1543 1.2561 -1.9281 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.1493 0.5390 2.5435 35 1 3.8639 0.5072 3.7629 36 1 3.9349 -0.8113 5.0109 37 1 1.5625 0.7141 7.2463 38 1 3.1119 -0.1318 7.0178 39 1 3.4065 2.5265 6.1101 40 1 5.0241 5.1383 7.4097 41 1 1.4061 -1.5117 5.6378 42 1 0.2746 -0.4868 4.6526 43 1 1.0853 -2.5609 -0.7326 44 1 1.8974 -3.7210 -2.7458 45 1 3.9113 -0.1663 -3.9827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725372758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:34 Heat of formation + Delta-G solvation = -76.059628 kcal Electronic energy + Delta-G solvation = -28345.500012 eV Core-core repulsion = 23999.630428 eV Total energy + Delta-G solvation = -4345.869583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.36198 -49.34003 -40.67856 -39.36366 -38.15230 -34.61985 -34.48757 -33.03303 -31.18622 -30.84467 -29.44202 -26.89219 -25.53438 -25.22290 -23.71621 -23.38861 -22.54870 -21.42552 -20.41474 -19.13244 -18.60511 -17.88251 -17.10429 -17.00771 -16.48765 -16.27740 -16.02501 -15.71593 -15.62575 -15.15833 -14.85811 -14.75235 -14.48550 -14.34084 -14.11672 -13.78677 -13.38463 -13.27162 -13.13527 -12.83606 -12.72768 -12.41405 -12.37345 -12.15504 -12.08721 -11.71147 -11.63234 -11.53837 -11.03776 -10.83432 -10.49582 -10.35347 -10.11292 -9.95313 -9.83722 -9.61478 -9.41272 -9.05787 -8.98628 -8.84618 -6.90214 -5.75792 -3.04047 0.54380 0.66686 2.44051 2.81417 3.15243 3.43815 3.48742 3.49519 3.50489 3.94155 4.07174 4.16888 4.42015 4.53993 4.57744 4.63986 4.69569 4.74808 4.80818 4.88087 5.08971 5.11813 5.18805 5.33516 5.42491 5.46725 5.53334 5.58337 5.61410 5.70098 5.72011 5.83733 5.87056 5.91478 5.99284 6.09433 6.22114 6.29273 6.37539 6.41208 6.60464 6.77624 6.92497 7.36261 7.70386 8.05782 8.43441 9.54360 10.13517 10.47795 11.47183 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020336 B = 0.001982 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.569586 B =14125.620253 C =14749.772833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.075 4.075 3 H 0.113 0.887 4 C 0.522 3.478 5 O -0.533 6.533 6 N -0.705 5.705 7 C 0.116 3.884 8 H 0.099 0.901 9 C -0.139 4.139 10 C -0.113 4.113 11 H 0.087 0.913 12 C 0.162 3.838 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.016 4.016 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.137 4.137 23 C -0.109 4.109 24 C -0.027 4.027 25 C -0.164 4.164 26 C 0.129 3.871 27 F -0.133 7.133 28 C -0.194 4.194 29 C 0.138 3.862 30 F -0.128 7.128 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.402 0.598 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.806 -13.085 -22.629 28.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.307 3.693 5 O -0.409 6.409 6 N -0.356 5.356 7 C 0.011 3.989 8 H 0.117 0.883 9 C -0.178 4.178 10 C -0.132 4.132 11 H 0.106 0.894 12 C 0.035 3.965 13 N -0.376 5.376 14 C -0.370 4.370 15 H 0.088 0.912 16 C -0.212 4.212 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.176 4.176 23 C -0.111 4.111 24 C -0.045 4.045 25 C -0.183 4.183 26 C 0.110 3.890 27 F -0.111 7.111 28 C -0.214 4.214 29 C 0.119 3.881 30 F -0.106 7.106 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.237 0.763 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.113 0.887 42 H 0.087 0.913 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.249 -13.773 -22.550 28.341 hybrid contribution 0.486 1.199 0.612 1.431 sum -9.762 -12.574 -21.938 27.105 Atomic orbital electron populations 1.21813 0.91221 1.03282 1.03489 1.20231 0.98281 1.00953 0.90163 0.86893 1.20289 0.80135 0.84546 0.84312 1.90722 1.37324 1.26256 1.86572 1.45654 1.53205 1.31750 1.04979 1.21958 0.96211 0.97158 0.83623 0.88267 1.23412 0.96579 0.99356 0.98416 1.22756 0.95986 0.96681 0.97758 0.89433 1.20639 0.94700 0.89857 0.91349 1.42347 1.67638 1.20391 1.07208 1.19243 1.29364 1.02453 0.85933 0.91241 1.24746 1.01576 0.97541 0.97288 1.69656 1.46323 1.13721 1.28594 0.86188 0.78516 0.77543 0.83943 1.21740 1.21788 1.20786 1.23311 0.98325 0.99398 0.96571 1.19398 1.00442 0.95300 0.95934 1.20661 0.96551 0.92249 0.95069 1.21182 1.00551 1.01618 0.94943 1.17301 0.96810 0.90252 0.84665 1.91530 1.87348 1.81530 1.50713 1.20959 1.05995 0.94674 0.99758 1.17078 0.97096 0.79175 0.94776 1.91534 1.90800 1.33693 1.94564 0.91086 0.90955 0.91571 0.76306 0.91332 0.89123 0.96419 0.96235 0.78345 0.93550 0.88716 0.91252 0.84076 0.83943 0.83363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 8.91 37.16 0.33 -0.47 16 2 C -0.07 -0.64 2.88 -92.92 -0.27 -0.91 16 3 H 0.11 0.93 7.12 -51.93 -0.37 0.56 16 4 C 0.52 5.85 7.02 -10.98 -0.08 5.77 16 5 O -0.53 -7.81 14.69 5.56 0.08 -7.73 16 6 N -0.71 -7.25 5.16 -53.02 -0.27 -7.52 16 7 C 0.12 1.37 4.32 -67.12 -0.29 1.08 16 8 H 0.10 1.25 7.46 -51.93 -0.39 0.86 16 9 C -0.14 -2.02 7.43 -25.92 -0.19 -2.21 16 10 C -0.11 -1.69 3.63 -89.81 -0.33 -2.01 16 11 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 12 C 0.16 3.18 6.10 -4.04 -0.02 3.15 16 13 N -0.73 -18.51 5.60 -59.91 -0.34 -18.84 16 14 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 16 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 17 N -0.93 -28.43 13.06 55.49 0.72 -27.70 16 18 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.14 -1.55 7.39 -25.92 -0.19 -1.75 16 23 C -0.11 -1.03 4.41 -104.55 -0.46 -1.49 16 24 C -0.03 -0.23 7.92 -39.61 -0.31 -0.55 16 25 C -0.16 -1.32 10.02 -39.51 -0.40 -1.72 16 26 C 0.13 1.16 7.30 -39.43 -0.29 0.87 16 27 F -0.13 -1.24 17.27 2.25 0.04 -1.20 16 28 C -0.19 -1.75 10.01 -39.45 -0.39 -2.14 16 29 C 0.14 1.36 7.24 -39.43 -0.29 1.08 16 30 F -0.13 -1.35 16.19 2.25 0.04 -1.31 16 31 H 0.07 0.33 7.56 -51.93 -0.39 -0.06 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.36 7.40 -51.93 -0.38 -0.03 16 34 H 0.40 3.32 8.12 -40.82 -0.33 2.99 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.09 1.36 7.90 -51.93 -0.41 0.95 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.39 7.84 -51.93 -0.41 -0.02 16 39 H 0.38 10.19 7.67 -40.82 -0.31 9.88 16 40 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 1.03 8.10 -51.93 -0.42 0.61 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.14 1.05 7.51 -52.49 -0.39 0.66 16 44 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -33.26 382.56 -8.73 -41.99 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.32 Total: 7.77 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.42 Total: -8.72 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.12 Total: -54.07 kcal Atomic # 8 Polarization: -7.81 SS G_CDS: 0.08 Total: -7.73 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.08 Total: -2.51 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.26 -8.73 -41.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725372758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.074 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds