Wall clock time and date at job start Tue Mar 31 2020 21:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47520 * 2 1 4 4 C 1.34943 * 126.03948 * 125.00019 * 3 2 1 5 5 C 1.35317 * 107.74514 * 180.02562 * 4 3 2 6 6 C 1.39866 * 107.92474 * 0.02562 * 5 4 3 7 7 C 1.50695 * 125.90405 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47160 * 94.99352 * 7 6 5 9 9 C 1.46904 * 110.99704 * 180.02562 * 8 7 6 10 10 H 1.08997 * 112.91255 * 23.75022 * 9 8 7 11 11 C 1.53781 * 113.61321 * 155.00207 * 9 8 7 12 12 C 1.53786 * 87.17350 * 139.93872 * 11 9 8 13 13 H 1.08993 * 113.61491 * 89.15923 * 12 11 9 14 14 N 1.46501 * 113.61366 * 220.06429 * 12 11 9 15 15 C 1.34773 * 120.00122 * 204.99908 * 14 12 11 16 16 O 1.21289 * 119.99571 * 359.97438 * 15 14 12 17 17 C 1.50691 * 120.00316 * 179.97438 * 15 14 12 18 18 S 1.81002 * 109.47243 * 179.97438 * 17 15 14 19 19 C 1.76201 * 100.00021 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99984 * 359.97438 * 19 18 17 21 21 C 1.38802 * 120.00105 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99869 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00162 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47133 * 59.99460 * 23 21 19 25 25 H 1.48502 * 109.46895 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46801 * 299.99538 * 23 21 19 27 27 C 1.53782 * 113.61210 * 252.49938 * 9 8 7 28 28 N 1.30840 * 108.19612 * 0.25929 * 6 5 4 29 29 H 1.09005 * 109.46685 * 60.00052 * 1 2 3 30 30 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47156 * 300.00439 * 1 2 3 32 32 H 1.08996 * 109.47156 * 239.99561 * 2 1 3 33 33 H 1.09005 * 109.46685 * 119.99948 * 2 1 3 34 34 H 1.07995 * 126.12958 * 0.03337 * 4 3 2 35 35 H 1.08001 * 126.03701 * 180.02562 * 5 4 3 36 36 H 1.09009 * 109.47134 * 334.99494 * 7 6 5 37 37 H 1.08999 * 109.47622 * 214.99966 * 7 6 5 38 38 H 1.00898 * 110.99931 * 303.95392 * 8 7 6 39 39 H 1.09002 * 113.61445 * 254.52871 * 11 9 8 40 40 H 1.09002 * 113.61408 * 25.34602 * 11 9 8 41 41 H 0.97002 * 119.99797 * 24.99368 * 14 12 11 42 42 H 1.09002 * 109.47503 * 300.00170 * 17 15 14 43 43 H 1.09005 * 109.47302 * 60.00162 * 17 15 14 44 44 H 0.97001 * 119.99853 * 179.97438 * 22 21 19 45 45 H 1.08997 * 113.61668 * 334.56534 * 27 9 8 46 46 H 1.08998 * 113.61674 * 105.39043 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9210 0.8938 5 6 3.0713 3.2136 0.5462 6 6 2.3113 3.4729 -0.5989 7 6 2.2339 4.7888 -1.3291 8 7 3.1973 4.7909 -2.4380 9 6 3.1503 6.0615 -3.1738 10 1 2.7624 6.8850 -2.5742 11 6 4.4594 6.3972 -3.9077 12 6 3.5889 6.9017 -5.0707 13 1 3.3211 7.9552 -4.9907 14 7 4.1109 6.5449 -6.3922 15 6 3.7913 7.2920 -7.4674 16 8 3.0710 8.2597 -7.3409 17 6 4.3288 6.9253 -8.8266 18 16 3.7246 8.1103 -10.0541 19 6 4.4830 7.4606 -11.5058 20 1 5.1039 6.5791 -11.4424 21 6 4.2835 8.0822 -12.7307 22 7 3.5273 9.1569 -12.8079 23 14 5.0871 7.3930 -14.2698 24 1 4.6176 6.0019 -14.4927 25 1 4.7194 8.2324 -15.4384 26 1 6.5626 7.3966 -14.1018 27 6 2.4946 5.9467 -4.5601 28 7 1.6751 2.3767 -0.9238 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8900 34 1 3.3192 1.4125 1.7357 35 1 3.7046 3.9204 1.0619 36 1 2.4703 5.6006 -0.6410 37 1 1.2269 4.9276 -1.7223 38 1 4.1309 4.5998 -2.1064 39 1 5.0414 7.1825 -3.4253 40 1 5.0569 5.5206 -4.1578 41 1 4.6868 5.7708 -6.4934 42 1 5.4183 6.9479 -8.8048 43 1 3.9914 5.9235 -9.0925 44 1 3.3882 9.5915 -13.6638 45 1 2.5542 4.9468 -4.9899 46 1 1.4899 6.3670 -4.6040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731470660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:38 Heat of formation + Delta-G solvation = 60.714310 kcal Electronic energy + Delta-G solvation = -24980.023966 eV Core-core repulsion = 21226.218483 eV Total energy + Delta-G solvation = -3753.805482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.52855 -39.92873 -38.21831 -35.70379 -34.30419 -32.69747 -32.38994 -30.71174 -29.73978 -28.96600 -26.46579 -25.78602 -25.44743 -23.54603 -22.81456 -21.48104 -20.33339 -20.18666 -19.58917 -17.75263 -17.43171 -16.71816 -16.23142 -15.83043 -15.77555 -15.37670 -14.86382 -14.77230 -14.75207 -14.42447 -14.05198 -13.95927 -13.72217 -13.54224 -13.07560 -12.78819 -12.62078 -12.55485 -12.54032 -12.49951 -12.15556 -11.86928 -11.76687 -11.39009 -11.05804 -11.01007 -10.99249 -10.79501 -10.71856 -10.66753 -9.78268 -9.63594 -9.30750 -9.02704 -8.94929 -8.81806 -8.62800 -8.19518 -6.45686 -6.17974 -3.88215 1.54915 2.11130 2.39471 3.09966 3.14082 3.26218 3.30272 3.35027 3.75448 3.97375 4.11745 4.24148 4.29644 4.39485 4.43332 4.47157 4.55280 4.67920 4.77335 4.84534 4.92783 5.08639 5.16983 5.18669 5.20386 5.24659 5.32620 5.42144 5.44393 5.54381 5.60499 5.64338 5.72308 5.74928 5.91135 5.95608 6.01229 6.16505 6.20191 6.29713 6.65219 6.75152 6.80816 7.05656 7.43501 7.62816 7.80935 8.38641 8.69202 9.27143 10.89398 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.001530 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.051482 B =18295.822122 C =19036.206927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.130 3.870 3 N -0.373 5.373 4 C 0.050 3.950 5 C -0.270 4.270 6 C 0.074 3.926 7 C 0.140 3.860 8 N -0.667 5.667 9 C 0.062 3.938 10 H 0.079 0.921 11 C -0.148 4.148 12 C 0.127 3.873 13 H 0.114 0.886 14 N -0.726 5.726 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.137 4.137 28 N -0.270 5.270 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.343 0.657 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 45 H 0.092 0.908 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.047 -17.111 31.967 36.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.009 3.991 3 N -0.156 5.156 4 C -0.096 4.096 5 C -0.300 4.300 6 C -0.093 4.093 7 C 0.009 3.991 8 N -0.299 5.299 9 C -0.048 4.048 10 H 0.097 0.903 11 C -0.187 4.187 12 C 0.020 3.980 13 H 0.132 0.868 14 N -0.379 5.379 15 C 0.319 3.681 16 O -0.394 6.394 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.177 4.177 28 N -0.092 5.092 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.162 0.838 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.111 0.889 41 H 0.233 0.767 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.529 -16.379 30.813 34.987 hybrid contribution 2.697 -1.181 0.180 2.949 sum 0.168 -17.560 30.993 35.622 Atomic orbital electron populations 1.22057 0.93682 1.02936 1.03696 1.21694 0.96219 0.77465 1.03724 1.48802 1.35397 1.10113 1.21298 1.22524 0.95818 0.94941 0.96286 1.21401 1.09883 0.96762 1.01958 1.22150 0.96713 0.95008 0.95450 1.20254 0.98461 0.89525 0.90858 1.60531 1.10312 1.32873 1.26226 1.22836 0.97534 0.90275 0.94202 0.90345 1.23617 0.96627 1.01723 0.96743 1.22231 0.94499 1.00115 0.81106 0.86802 1.45935 1.53135 1.31905 1.06894 1.20330 0.79957 0.82276 0.85531 1.90691 1.35946 1.27162 1.85554 1.23540 1.04204 1.06360 0.96376 1.85380 1.65638 1.34594 0.97760 1.22841 1.35680 1.16245 0.93670 0.90991 1.24987 0.95146 0.94753 0.98665 1.70012 1.35867 1.18343 1.26096 0.86230 0.79518 0.78892 0.80886 1.19958 1.20821 1.19959 1.23609 0.98800 1.00833 0.94457 1.77372 1.23002 0.96409 1.12434 0.90887 0.90660 0.92168 0.89685 0.88759 0.81154 0.83761 0.93071 0.89461 0.83801 0.90787 0.88949 0.76728 0.89264 0.89228 0.92161 0.88933 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.09 37.16 0.37 -0.43 16 2 C 0.13 0.62 7.23 -4.04 -0.03 0.59 16 3 N -0.37 -3.02 3.68 -61.37 -0.23 -3.25 16 4 C 0.05 0.33 11.45 -17.23 -0.20 0.13 16 5 C -0.27 -2.06 10.74 -40.01 -0.43 -2.49 16 6 C 0.07 0.70 6.73 -82.41 -0.55 0.15 16 7 C 0.14 1.16 6.09 -4.98 -0.03 1.13 16 8 N -0.67 -5.70 6.55 -107.13 -0.70 -6.40 16 9 C 0.06 0.53 4.14 -66.90 -0.28 0.25 16 10 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 11 C -0.15 -1.26 7.40 -25.92 -0.19 -1.45 16 12 C 0.13 1.51 4.25 -67.02 -0.28 1.23 16 13 H 0.11 1.55 7.47 -51.93 -0.39 1.17 16 14 N -0.73 -9.99 5.36 -52.93 -0.28 -10.28 16 15 C 0.53 10.17 7.85 -10.99 -0.09 10.09 16 16 O -0.52 -12.00 15.46 5.55 0.09 -11.91 16 17 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 19 C -0.54 -15.50 9.50 30.94 0.29 -15.20 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 27 C -0.14 -1.52 7.69 -25.82 -0.20 -1.72 16 28 N -0.27 -2.97 12.41 33.67 0.42 -2.55 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.18 8.07 -51.93 -0.42 -0.24 16 34 H 0.17 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 36 H 0.05 0.34 8.13 -51.92 -0.42 -0.08 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.34 2.60 8.54 -39.29 -0.34 2.27 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.40 4.39 8.73 -40.82 -0.36 4.04 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 43 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 45 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -37.01 403.50 -9.98 -46.99 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.37 Total: 2.93 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.48 Total: -8.64 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.06 Total: -48.19 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.01 -9.98 -46.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731470660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.705 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds