Wall clock time and date at job start Tue Mar 31 2020 20:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 C 1.52998 * 109.47072 * 175.00012 * 4 2 1 6 6 N 1.46909 * 109.46811 * 180.02562 * 5 4 2 7 7 C 1.46902 * 110.99739 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46920 * 324.99863 * 7 6 5 9 9 C 1.52991 * 109.47141 * 84.99789 * 7 6 5 10 10 C 1.50702 * 109.46978 * 204.99964 * 7 6 5 11 11 N 1.31793 * 119.12113 * 314.73084 * 10 7 6 12 12 C 1.32330 * 120.81871 * 179.76230 * 11 10 7 13 13 C 1.38602 * 119.10404 * 0.49756 * 12 11 10 14 14 C 1.38598 * 118.39582 * 359.75883 * 13 12 11 15 15 N 1.31795 * 119.12075 * 134.99775 * 10 7 6 16 16 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 17 17 C 1.34777 * 120.00258 * 275.00436 * 16 2 1 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 31 31 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 32 32 H 1.08998 * 109.47261 * 295.00245 * 4 2 1 33 33 H 1.09000 * 109.47285 * 54.99999 * 4 2 1 34 34 H 1.08995 * 109.47218 * 299.99474 * 5 4 2 35 35 H 1.09000 * 109.47102 * 60.00415 * 5 4 2 36 36 H 1.00899 * 110.99839 * 303.95385 * 6 5 4 37 37 H 1.08995 * 109.47501 * 299.99845 * 9 7 6 38 38 H 1.08999 * 109.47153 * 60.00216 * 9 7 6 39 39 H 1.08998 * 109.47378 * 179.97438 * 9 7 6 40 40 H 1.08001 * 120.45176 * 180.27971 * 12 11 10 41 41 H 1.07998 * 120.80055 * 179.77173 * 13 12 11 42 42 H 1.08002 * 120.44660 * 180.02562 * 14 13 12 43 43 H 0.96999 * 119.99694 * 94.99826 * 16 2 1 44 44 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 45 45 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 46 46 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0544 -1.3053 -2.5134 7 6 5.5181 -1.2228 -2.6083 8 1 5.8532 -0.2593 -2.2244 9 6 6.1468 -2.3472 -1.7831 10 6 5.9367 -1.3626 -4.0492 11 7 5.3900 -2.3078 -4.7871 12 6 5.7294 -2.4577 -6.0574 13 6 6.6801 -1.6112 -6.6056 14 6 7.2362 -0.6327 -5.7967 15 7 6.8437 -0.5397 -4.5363 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3571 18 8 1.8589 1.1587 2.4115 19 6 2.6488 -0.7287 3.5878 20 16 2.7105 0.4346 4.9731 21 6 3.3121 -0.6309 6.2408 22 1 3.5201 -1.6677 6.0212 23 6 3.5178 -0.1380 7.5220 24 7 3.2629 1.1252 7.7900 25 14 4.1550 -1.2680 8.8662 26 1 5.6395 -1.2306 8.8817 27 1 3.6347 -0.8151 10.1813 28 1 3.6974 -2.6562 8.6042 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4259 36 1 3.7450 -2.2656 -2.5285 37 1 5.8441 -2.2461 -0.7409 38 1 5.8117 -3.3107 -2.1670 39 1 7.2328 -2.2863 -1.8538 40 1 5.2743 -3.2315 -6.6579 41 1 6.9801 -1.7114 -7.6382 42 1 7.9795 0.0450 -6.1898 43 1 2.2490 -1.6316 1.1527 44 1 1.9759 -1.5504 3.8327 45 1 3.6480 -1.1212 3.3986 46 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732675218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:59 Heat of formation + Delta-G solvation = 1.720954 kcal Electronic energy + Delta-G solvation = -25658.338092 eV Core-core repulsion = 21901.974466 eV Total energy + Delta-G solvation = -3756.363626 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40640 -39.44420 -37.67141 -35.82363 -34.05320 -32.99903 -32.42073 -31.65962 -30.38235 -28.52357 -27.72566 -25.47669 -25.29396 -24.89663 -22.93266 -21.70633 -21.20229 -20.26724 -17.87840 -17.84873 -17.49609 -16.49561 -16.17386 -15.93360 -15.57700 -15.36717 -14.85702 -14.79585 -14.71392 -14.61075 -14.08067 -13.89247 -13.63290 -13.36041 -13.17637 -13.12220 -12.74358 -12.63551 -12.41001 -12.01838 -11.89354 -11.71231 -11.50715 -11.31978 -11.17618 -11.06676 -11.03008 -11.01486 -10.87403 -10.74720 -9.94209 -9.80328 -9.58214 -9.33889 -9.06317 -8.90610 -8.69752 -8.22074 -6.48670 -6.20838 -3.91146 0.50875 0.72529 3.06709 3.13901 3.22655 3.25646 3.28631 3.33329 3.44363 3.70426 3.75808 4.11852 4.20177 4.21274 4.57161 4.65347 4.69555 4.74595 4.80125 4.87459 4.95166 5.02622 5.14234 5.20476 5.28970 5.31493 5.40938 5.41260 5.48878 5.52242 5.62547 5.71775 5.74719 5.79924 5.89553 5.90534 6.00094 6.10540 6.15265 6.26231 6.58225 6.69498 6.73303 7.09496 7.60240 7.75924 7.76362 8.35927 8.66611 9.24447 10.86543 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.001944 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.452195 B =14398.804050 C =15612.923883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.144 3.856 3 H 0.089 0.911 4 C -0.121 4.121 5 C 0.057 3.943 6 N -0.677 5.677 7 C 0.151 3.849 8 H 0.106 0.894 9 C -0.176 4.176 10 C 0.339 3.661 11 N -0.502 5.502 12 C 0.148 3.852 13 C -0.238 4.238 14 C 0.149 3.851 15 N -0.518 5.518 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.350 0.650 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.395 0.605 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.264 -9.258 -29.909 31.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.159 4.159 5 C -0.071 4.071 6 N -0.308 5.308 7 C 0.039 3.961 8 H 0.123 0.877 9 C -0.236 4.236 10 C 0.070 3.930 11 N -0.216 5.216 12 C -0.019 4.019 13 C -0.260 4.260 14 C -0.017 4.017 15 N -0.231 5.231 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.392 6.392 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.169 0.831 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.229 0.771 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.386 -6.496 -29.143 30.050 hybrid contribution 1.456 -3.285 0.352 3.611 sum 4.842 -9.781 -28.791 30.791 Atomic orbital electron populations 1.22164 0.95319 1.01968 1.02635 1.20859 0.94009 0.97731 0.83555 0.89339 1.21838 0.94937 1.01290 0.97876 1.22056 0.95037 0.99673 0.90383 1.60323 1.07988 1.21678 1.40845 1.20141 0.88657 1.00717 0.86577 0.87650 1.22436 1.01912 0.98651 1.00577 1.23064 0.87357 0.85881 0.96655 1.68188 1.25877 1.21062 1.06472 1.23270 0.91559 0.95912 0.91129 1.22913 1.00901 0.99105 1.03041 1.23234 0.95358 0.94412 0.88717 1.68217 1.13917 1.26226 1.14781 1.46134 1.69340 1.13767 1.09640 1.20284 0.76853 0.87236 0.83783 1.90698 1.48298 1.15767 1.84390 1.23538 1.03553 1.04842 0.98518 1.85397 1.86338 1.12835 0.98765 1.22868 1.50995 0.98122 0.96397 0.90978 1.24990 0.95115 0.95541 0.97943 1.70014 1.45475 1.13226 1.21543 0.86178 0.78994 0.80201 0.80179 1.20282 1.20750 1.19720 0.92654 0.91685 0.91909 0.91446 0.89667 0.90589 0.94262 0.83107 0.90989 0.91587 0.91775 0.81599 0.83612 0.81529 0.77099 0.89338 0.89402 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.43 16 2 C 0.14 1.63 2.57 -67.93 -0.17 1.45 16 3 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.02 5.01 -26.73 -0.13 -1.15 16 5 C 0.06 0.52 5.37 -3.82 -0.02 0.50 16 6 N -0.68 -5.99 6.05 -107.95 -0.65 -6.64 16 7 C 0.15 1.41 2.99 -68.87 -0.21 1.20 16 8 H 0.11 1.06 7.78 -51.93 -0.40 0.66 16 9 C -0.18 -1.44 9.14 37.15 0.34 -1.10 16 10 C 0.34 3.44 6.59 -157.19 -1.04 2.40 16 11 N -0.50 -4.72 10.11 -10.72 -0.11 -4.82 16 12 C 0.15 0.98 11.30 -17.20 -0.19 0.79 16 13 C -0.24 -1.29 10.17 -39.31 -0.40 -1.69 16 14 C 0.15 1.04 11.30 -17.20 -0.19 0.85 16 15 N -0.52 -5.24 10.32 -10.72 -0.11 -5.35 16 16 N -0.73 -9.41 4.53 -53.81 -0.24 -9.66 16 17 C 0.53 9.75 7.81 -10.98 -0.09 9.67 16 18 O -0.52 -11.62 15.52 5.56 0.09 -11.54 16 19 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.28 9.50 30.94 0.29 -14.99 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.04 0.36 7.05 -51.93 -0.37 0.00 16 36 H 0.35 2.86 8.47 -39.29 -0.33 2.53 16 37 H 0.07 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 42 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 43 H 0.40 3.98 8.60 -40.82 -0.35 3.63 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 46 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -36.02 402.65 -10.07 -46.09 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -7.27 Total: 3.11 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.33 Total: -4.35 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: -0.38 Total: -51.96 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.02 -10.07 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732675218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.807 kcal (2) G-P(sol) polarization free energy of solvation -36.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds