Wall clock time and date at job start Tue Mar 31 2020 20:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46901 * 2 1 4 4 C 1.52998 * 109.47292 * 239.99834 * 2 1 3 5 5 C 1.52998 * 109.47072 * 175.00012 * 4 2 1 6 6 N 1.46909 * 109.46811 * 180.02562 * 5 4 2 7 7 C 1.46902 * 110.99739 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.46920 * 324.99863 * 7 6 5 9 9 C 1.52991 * 109.47141 * 84.99789 * 7 6 5 10 10 C 1.50702 * 109.46978 * 204.99964 * 7 6 5 11 11 N 1.31793 * 119.12113 * 314.73084 * 10 7 6 12 12 C 1.32330 * 120.81871 * 179.76230 * 11 10 7 13 13 C 1.38602 * 119.10404 * 0.49756 * 12 11 10 14 14 C 1.38598 * 118.39582 * 359.75883 * 13 12 11 15 15 N 1.31795 * 119.12075 * 134.99775 * 10 7 6 16 16 N 1.46496 * 109.47234 * 119.99509 * 2 1 3 17 17 C 1.34777 * 120.00258 * 275.00436 * 16 2 1 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 2 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 2 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.08994 * 109.47090 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47093 * 300.00316 * 1 2 3 31 31 H 1.09002 * 109.47121 * 60.00104 * 1 2 3 32 32 H 1.08998 * 109.47261 * 295.00245 * 4 2 1 33 33 H 1.09000 * 109.47285 * 54.99999 * 4 2 1 34 34 H 1.08995 * 109.47218 * 299.99474 * 5 4 2 35 35 H 1.09000 * 109.47102 * 60.00415 * 5 4 2 36 36 H 1.00899 * 110.99839 * 303.95385 * 6 5 4 37 37 H 1.08995 * 109.47501 * 299.99845 * 9 7 6 38 38 H 1.08999 * 109.47153 * 60.00216 * 9 7 6 39 39 H 1.08998 * 109.47378 * 179.97438 * 9 7 6 40 40 H 1.08001 * 120.45176 * 180.27971 * 12 11 10 41 41 H 1.07998 * 120.80055 * 179.77173 * 13 12 11 42 42 H 1.08002 * 120.44660 * 180.02562 * 14 13 12 43 43 H 0.96999 * 119.99694 * 94.99826 * 16 2 1 44 44 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 45 45 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 46 46 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3136 6 7 4.0544 -1.3053 -2.5134 7 6 5.5181 -1.2228 -2.6083 8 1 5.8532 -0.2593 -2.2244 9 6 6.1468 -2.3472 -1.7831 10 6 5.9367 -1.3626 -4.0492 11 7 5.3900 -2.3078 -4.7871 12 6 5.7294 -2.4577 -6.0574 13 6 6.6801 -1.6112 -6.6056 14 6 7.2362 -0.6327 -5.7967 15 7 6.8437 -0.5397 -4.5363 16 7 2.0183 -0.6905 1.1962 17 6 2.1470 -0.0181 2.3571 18 8 1.8589 1.1587 2.4115 19 6 2.6488 -0.7287 3.5878 20 16 2.7105 0.4346 4.9731 21 6 3.3121 -0.6309 6.2408 22 1 3.5201 -1.6677 6.0212 23 6 3.5178 -0.1380 7.5220 24 7 3.2629 1.1252 7.7900 25 14 4.1550 -1.2680 8.8662 26 1 5.6395 -1.2306 8.8817 27 1 3.6347 -0.8151 10.1813 28 1 3.6974 -2.6562 8.6042 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.7516 -1.7715 -1.2056 33 1 1.6054 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3574 35 1 3.9994 -1.0728 -0.4259 36 1 3.7450 -2.2656 -2.5285 37 1 5.8441 -2.2461 -0.7409 38 1 5.8117 -3.3107 -2.1670 39 1 7.2328 -2.2863 -1.8538 40 1 5.2743 -3.2315 -6.6579 41 1 6.9801 -1.7114 -7.6382 42 1 7.9795 0.0450 -6.1898 43 1 2.2490 -1.6316 1.1527 44 1 1.9759 -1.5504 3.8327 45 1 3.6480 -1.1212 3.3986 46 1 3.4070 1.4697 8.6852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732675218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:58 Heat of formation + Delta-G solvation = -24.921055 kcal Electronic energy + Delta-G solvation = -25659.493376 eV Core-core repulsion = 21901.974466 eV Total energy + Delta-G solvation = -3757.518911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95953 -40.78271 -38.50217 -36.87075 -34.61980 -34.58377 -33.83568 -32.68221 -31.17437 -29.93926 -28.48483 -27.65421 -25.89891 -25.42809 -23.77268 -22.42421 -22.18641 -21.51699 -19.83068 -18.45586 -18.09773 -17.89967 -17.26541 -16.87777 -16.65785 -16.35052 -16.21391 -16.00504 -15.89676 -15.36690 -15.28933 -14.72709 -14.66525 -14.36730 -14.34849 -14.11431 -13.95506 -13.71567 -13.25534 -13.16253 -13.12278 -12.94482 -12.89040 -12.58360 -12.42559 -12.30963 -12.06040 -11.81399 -11.77728 -11.71083 -11.62217 -11.14223 -10.87899 -10.44541 -10.26475 -10.15952 -10.09329 -9.43172 -8.65967 -8.34383 -6.12236 -0.01913 0.21494 1.27748 1.42173 1.47596 1.57996 1.66239 2.26775 2.34481 2.65048 2.87616 2.99602 3.14266 3.33351 3.49973 3.80843 3.88795 3.97588 4.00999 4.09671 4.11592 4.22034 4.25734 4.29295 4.31604 4.44419 4.45524 4.51517 4.56874 4.68847 4.73658 4.78478 4.83619 4.93839 4.99235 5.09228 5.13828 5.21153 5.34244 5.41909 5.49968 5.60449 5.91020 6.13728 6.19964 6.44928 6.56849 7.06829 7.18837 7.30855 8.74772 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.001944 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.452195 B =14398.804050 C =15612.923883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.144 3.856 3 H 0.063 0.937 4 C -0.105 4.105 5 C 0.061 3.939 6 N -0.674 5.674 7 C 0.152 3.848 8 H 0.089 0.911 9 C -0.167 4.167 10 C 0.317 3.683 11 N -0.520 5.520 12 C 0.134 3.866 13 C -0.222 4.222 14 C 0.132 3.868 15 N -0.551 5.551 16 N -0.707 5.707 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.130 4.130 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.258 1.258 29 H 0.073 0.927 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.356 0.644 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.057 0.943 40 H 0.197 0.803 41 H 0.183 0.817 42 H 0.193 0.807 43 H 0.414 0.586 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.626 -12.274 -32.035 34.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.143 4.143 5 C -0.068 4.068 6 N -0.307 5.307 7 C 0.040 3.960 8 H 0.107 0.893 9 C -0.226 4.226 10 C 0.049 3.951 11 N -0.235 5.235 12 C -0.031 4.031 13 C -0.244 4.244 14 C -0.033 4.033 15 N -0.265 5.265 16 N -0.361 5.361 17 C 0.320 3.680 18 O -0.444 6.444 19 C -0.281 4.281 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.193 1.193 27 H -0.203 1.203 28 H -0.182 1.182 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.176 0.824 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.214 0.786 41 H 0.201 0.799 42 H 0.210 0.790 43 H 0.251 0.749 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.751 -9.564 -31.331 32.972 hybrid contribution 1.352 -2.363 0.778 2.832 sum 5.103 -11.927 -30.553 33.193 Atomic orbital electron populations 1.22120 0.94550 1.02967 1.01985 1.20980 0.94535 0.96806 0.83804 0.91899 1.21705 0.94146 1.02255 0.96196 1.21965 0.95550 0.98706 0.90540 1.60280 1.07879 1.22038 1.40454 1.20066 0.88830 1.00166 0.86974 0.89329 1.22341 1.01428 0.98433 1.00418 1.23067 0.88277 0.86799 0.96999 1.68174 1.26420 1.21080 1.07782 1.23905 0.91839 0.96786 0.90576 1.23296 0.99322 0.97386 1.04379 1.23805 0.95954 0.95448 0.88076 1.68191 1.14686 1.27053 1.16597 1.45885 1.67392 1.14440 1.08383 1.20027 0.76696 0.86568 0.84673 1.90689 1.50765 1.17820 1.85175 1.23382 1.05416 1.03151 0.96156 1.85588 1.86746 1.17330 1.02843 1.23204 1.50911 0.98434 0.96838 0.89938 1.26132 0.95100 0.97217 1.00761 1.70182 1.46791 1.15500 1.22283 0.84959 0.78494 0.78216 0.76339 1.19321 1.20313 1.18170 0.90756 0.95007 0.89940 0.89078 0.88802 0.92417 0.94429 0.82435 0.90847 0.91220 0.92352 0.78600 0.79947 0.79032 0.74907 0.87363 0.87376 0.92018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 9.48 71.98 0.68 -2.57 16 2 C 0.14 3.10 2.57 44.99 0.12 3.22 16 3 H 0.06 1.74 7.58 -2.39 -0.02 1.72 16 4 C -0.10 -1.53 5.01 30.59 0.15 -1.38 16 5 C 0.06 1.05 5.37 86.30 0.46 1.52 16 6 N -0.67 -11.32 6.05 -495.45 -3.00 -14.32 16 7 C 0.15 2.84 2.99 44.17 0.13 2.98 16 8 H 0.09 1.90 7.78 -2.39 -0.02 1.88 16 9 C -0.17 -2.67 9.14 71.98 0.66 -2.02 16 10 C 0.32 6.36 6.59 138.75 0.91 7.28 16 11 N -0.52 -9.15 10.11 -187.84 -1.90 -11.05 16 12 C 0.13 1.49 11.30 84.70 0.96 2.44 16 13 C -0.22 -1.82 10.17 22.44 0.23 -1.60 16 14 C 0.13 1.66 11.30 84.70 0.96 2.62 16 15 N -0.55 -11.08 10.32 -187.84 -1.94 -13.02 16 16 N -0.71 -17.14 4.53 -442.54 -2.00 -19.15 16 17 C 0.53 19.57 7.81 87.66 0.68 20.26 16 18 O -0.57 -26.37 15.52 -3.03 -0.05 -26.42 16 19 C -0.13 -5.13 6.16 71.24 0.44 -4.69 16 20 S -0.15 -8.51 20.57 -56.49 -1.16 -9.68 16 21 C -0.55 -31.34 9.50 67.96 0.65 -30.69 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 23 C 0.01 0.72 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 25 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 28 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.21 8.05 -2.39 -0.02 1.19 16 35 H 0.04 0.65 7.05 -2.39 -0.02 0.64 16 36 H 0.36 5.19 8.47 -89.69 -0.76 4.43 16 37 H 0.07 1.12 7.45 -2.39 -0.02 1.10 16 38 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 39 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 41 H 0.18 0.05 8.06 -2.91 -0.02 0.03 16 42 H 0.19 1.14 8.06 -2.91 -0.02 1.12 16 43 H 0.41 7.15 8.60 -92.71 -0.80 6.36 16 44 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 45 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 46 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -82.51 402.65 -0.80 -83.31 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.57 Total: 22.01 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 7.50 Total: -1.45 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -8.55 Total: -113.61 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.42 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.68 kcal Total: -82.51 -0.80 -83.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732675218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.389 kcal (2) G-P(sol) polarization free energy of solvation -82.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds