Wall clock time and date at job start Tue Mar 31 2020 20:37:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 N 1.46894 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.46900 * 111.00559 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46908 * 325.00326 * 7 6 5 9 9 C 1.53000 * 109.47145 * 84.99825 * 7 6 5 10 10 C 1.50703 * 109.47457 * 205.00488 * 7 6 5 11 11 N 1.31793 * 119.11793 * 314.72372 * 10 7 6 12 12 C 1.32336 * 120.81537 * 179.76411 * 11 10 7 13 13 C 1.38591 * 119.10462 * 0.50478 * 12 11 10 14 14 C 1.38603 * 118.40110 * 359.75082 * 13 12 11 15 15 N 1.31787 * 119.12362 * 135.00037 * 10 7 6 16 16 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 17 17 C 1.34775 * 119.99962 * 85.00055 * 16 2 1 18 18 O 1.21279 * 120.00095 * 0.02562 * 17 16 2 19 19 C 1.50697 * 120.00075 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.47250 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00241 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99523 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00101 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00344 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99668 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47084 * 90.00012 * 25 23 21 27 27 H 1.48503 * 109.46997 * 209.99623 * 25 23 21 28 28 H 1.48496 * 109.47265 * 329.99236 * 25 23 21 29 29 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 30 30 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 33 33 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.00899 * 111.00176 * 303.95826 * 6 5 4 37 37 H 1.09002 * 109.47075 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47164 * 300.00459 * 9 7 6 39 39 H 1.08998 * 109.46626 * 60.00555 * 9 7 6 40 40 H 1.08002 * 120.44728 * 180.28404 * 12 11 10 41 41 H 1.08002 * 120.80243 * 179.78034 * 13 12 11 42 42 H 1.08000 * 120.44954 * 179.97438 * 14 13 12 43 43 H 0.96998 * 119.99659 * 264.99982 * 16 2 1 44 44 H 1.09001 * 109.47614 * 300.00351 * 19 17 16 45 45 H 1.09001 * 109.46875 * 59.99997 * 19 17 16 46 46 H 0.96994 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0545 -1.3061 2.5129 7 6 5.5180 -1.2225 2.6085 8 1 5.9501 -1.2579 1.6084 9 6 5.9106 0.0912 3.2875 10 6 6.0355 -2.3819 3.4205 11 7 5.4279 -2.6982 4.5464 12 6 5.8510 -3.7127 5.2833 13 6 6.9540 -4.4382 4.8617 14 6 7.5695 -4.0722 3.6750 15 7 7.0868 -3.0489 2.9885 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8591 1.1585 -2.4115 19 6 2.6500 -0.7286 -3.5874 20 16 2.7115 0.4345 -4.9728 21 6 3.3145 -0.6307 -6.2402 22 1 3.5238 -1.6672 -6.0201 23 6 3.5214 -0.1377 -7.5210 24 7 3.2667 1.1256 -7.7891 25 14 4.1600 -1.2673 -8.8648 26 1 3.0140 -1.9033 -9.5629 27 1 4.9562 -0.4777 -9.8383 28 1 5.0175 -2.3189 -8.2614 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0727 0.4261 35 1 3.8532 0.4370 1.3574 36 1 3.6167 -0.9413 3.3455 37 1 6.9966 0.1534 3.3580 38 1 5.5363 0.9297 2.7001 39 1 5.4786 0.1265 4.2876 40 1 5.3458 -3.9696 6.2027 41 1 7.3248 -5.2691 5.4436 42 1 8.4317 -4.6144 3.3156 43 1 2.2491 -1.6318 -1.1525 44 1 3.6493 -1.1205 -3.3978 45 1 1.9777 -1.5509 -3.8324 46 1 3.4109 1.4700 -8.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732675220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:06 Heat of formation + Delta-G solvation = 1.809792 kcal Electronic energy + Delta-G solvation = -25682.947074 eV Core-core repulsion = 21926.587299 eV Total energy + Delta-G solvation = -3756.359774 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39472 -39.42509 -37.67226 -35.81792 -34.03939 -32.99433 -32.40484 -31.63744 -30.38506 -28.50470 -27.73187 -25.46050 -25.29008 -24.88531 -22.92887 -21.69916 -21.19701 -20.24518 -17.86891 -17.83680 -17.47668 -16.52240 -16.12690 -16.00196 -15.50321 -15.26223 -14.94950 -14.78378 -14.72441 -14.54819 -14.06045 -13.88239 -13.53819 -13.45203 -13.26939 -13.08796 -12.75020 -12.56821 -12.41841 -12.05536 -11.88229 -11.71026 -11.46748 -11.32466 -11.16196 -11.06649 -11.04209 -10.99520 -10.84647 -10.73044 -9.93167 -9.78616 -9.56844 -9.32283 -9.04630 -8.84420 -8.74211 -8.20420 -6.46901 -6.19286 -3.89411 0.52128 0.73862 3.08649 3.15674 3.24189 3.26263 3.30016 3.35120 3.45565 3.70985 3.77996 4.12113 4.21580 4.22996 4.58203 4.66918 4.70852 4.74924 4.85004 4.85601 4.89645 5.00601 5.15839 5.22301 5.29298 5.31847 5.41009 5.42000 5.47394 5.51539 5.64195 5.72024 5.73834 5.76053 5.88095 5.93573 6.00863 6.12394 6.18654 6.26103 6.58712 6.69990 6.75388 7.09521 7.62144 7.77127 7.79244 8.37815 8.68486 9.26127 10.88128 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011828 B = 0.002107 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.795026 B =13284.861705 C =14938.292519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.145 3.855 3 H 0.087 0.913 4 C -0.122 4.122 5 C 0.057 3.943 6 N -0.676 5.676 7 C 0.151 3.849 8 H 0.106 0.894 9 C -0.176 4.176 10 C 0.338 3.662 11 N -0.503 5.503 12 C 0.147 3.853 13 C -0.237 4.237 14 C 0.149 3.851 15 N -0.517 5.517 16 N -0.734 5.734 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.154 4.154 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.349 0.651 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.168 0.832 43 H 0.397 0.603 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -10.184 29.383 31.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.105 0.895 4 C -0.160 4.160 5 C -0.071 4.071 6 N -0.308 5.308 7 C 0.039 3.961 8 H 0.124 0.876 9 C -0.235 4.235 10 C 0.070 3.930 11 N -0.216 5.216 12 C -0.019 4.019 13 C -0.259 4.259 14 C -0.017 4.017 15 N -0.230 5.230 16 N -0.388 5.388 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.305 4.305 20 S 0.166 5.834 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.169 0.831 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.184 0.816 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.231 0.769 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.543 -7.911 28.320 29.617 hybrid contribution 1.371 -2.588 0.077 2.930 sum 4.914 -10.499 28.397 30.672 Atomic orbital electron populations 1.22169 0.95338 1.02030 1.02571 1.20845 0.93991 0.97550 0.83720 0.89512 1.21838 0.94741 1.01949 0.97477 1.22056 0.95295 0.96715 0.93080 1.60308 1.03399 1.60837 1.06248 1.20144 0.89079 0.88754 0.98140 0.87591 1.22435 1.02697 0.96872 1.01523 1.23049 0.87004 0.93994 0.88960 1.68186 1.30566 1.16433 1.06457 1.23261 0.91875 0.89045 0.97730 1.22914 0.99637 1.03543 0.99828 1.23246 0.97166 0.91164 0.90101 1.68217 1.12992 1.07673 1.34156 1.46131 1.69246 1.13912 1.09541 1.20283 0.76810 0.87214 0.83795 1.90692 1.48429 1.15783 1.84424 1.23537 1.03639 1.04822 0.98465 1.85374 1.86311 1.12927 0.98806 1.22871 1.50844 0.98156 0.96403 0.90960 1.24989 0.95145 0.95528 0.97957 1.70016 1.45664 1.13186 1.21456 0.86174 0.78825 0.79976 0.80564 1.20289 1.20770 1.19700 0.92002 0.91668 0.92579 0.90563 0.90510 0.90370 0.94536 0.83135 0.91779 0.91108 0.91601 0.81615 0.83612 0.81498 0.76866 0.89310 0.89315 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 2 C 0.14 1.64 2.57 -67.93 -0.17 1.47 16 3 H 0.09 1.15 7.58 -51.93 -0.39 0.76 16 4 C -0.12 -1.03 5.01 -26.73 -0.13 -1.16 16 5 C 0.06 0.52 5.37 -3.83 -0.02 0.50 16 6 N -0.68 -6.00 6.05 -107.95 -0.65 -6.65 16 7 C 0.15 1.41 2.99 -68.86 -0.21 1.20 16 8 H 0.11 1.08 7.78 -51.92 -0.40 0.68 16 9 C -0.18 -1.39 9.14 37.16 0.34 -1.05 16 10 C 0.34 3.46 6.59 -157.20 -1.04 2.43 16 11 N -0.50 -4.73 10.11 -10.73 -0.11 -4.84 16 12 C 0.15 0.99 11.30 -17.20 -0.19 0.80 16 13 C -0.24 -1.33 10.17 -39.32 -0.40 -1.73 16 14 C 0.15 1.09 11.31 -17.20 -0.19 0.89 16 15 N -0.52 -5.34 10.32 -10.72 -0.11 -5.45 16 16 N -0.73 -9.69 4.53 -53.81 -0.24 -9.93 16 17 C 0.53 9.89 7.81 -10.99 -0.09 9.80 16 18 O -0.52 -11.69 15.52 5.56 0.09 -11.60 16 19 C -0.15 -3.13 6.16 36.00 0.22 -2.91 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.35 13.22 55.49 0.73 -25.62 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 35 H 0.04 0.34 7.44 -51.93 -0.39 -0.05 16 36 H 0.35 2.84 8.47 -39.29 -0.33 2.50 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.53 7.45 -51.93 -0.39 0.14 16 39 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 40 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 41 H 0.15 0.35 8.06 -52.49 -0.42 -0.07 16 42 H 0.17 0.71 8.06 -52.49 -0.42 0.28 16 43 H 0.40 4.30 8.60 -40.82 -0.35 3.95 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 45 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -36.11 402.65 -10.07 -46.17 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -7.27 Total: 3.41 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -1.33 Total: -4.26 kcal Atomic # 7 Polarization: -52.11 SS G_CDS: -0.38 Total: -52.50 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.11 -10.07 -46.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732675220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.983 kcal (2) G-P(sol) polarization free energy of solvation -36.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds