Wall clock time and date at job start Tue Mar 31 2020 20:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46824 * 2 1 4 4 C 1.53000 * 109.46846 * 119.99583 * 2 1 3 5 5 C 1.52997 * 109.47060 * 185.00166 * 4 2 1 6 6 N 1.46894 * 109.47515 * 180.02562 * 5 4 2 7 7 C 1.46900 * 111.00559 * 180.02562 * 6 5 4 8 8 H 1.09007 * 109.46908 * 325.00326 * 7 6 5 9 9 C 1.53000 * 109.47145 * 84.99825 * 7 6 5 10 10 C 1.50703 * 109.47457 * 205.00488 * 7 6 5 11 11 N 1.31793 * 119.11793 * 314.72372 * 10 7 6 12 12 C 1.32336 * 120.81537 * 179.76411 * 11 10 7 13 13 C 1.38591 * 119.10462 * 0.50478 * 12 11 10 14 14 C 1.38603 * 118.40110 * 359.75082 * 13 12 11 15 15 N 1.31787 * 119.12362 * 135.00037 * 10 7 6 16 16 N 1.46498 * 109.47107 * 239.99825 * 2 1 3 17 17 C 1.34775 * 119.99962 * 85.00055 * 16 2 1 18 18 O 1.21279 * 120.00095 * 0.02562 * 17 16 2 19 19 C 1.50697 * 120.00075 * 179.97438 * 17 16 2 20 20 S 1.80996 * 109.47250 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00241 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99523 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00101 * 180.02562 * 21 20 19 24 24 N 1.31627 * 120.00344 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99668 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47084 * 90.00012 * 25 23 21 27 27 H 1.48503 * 109.46997 * 209.99623 * 25 23 21 28 28 H 1.48496 * 109.47265 * 329.99236 * 25 23 21 29 29 H 1.09001 * 109.47241 * 299.99897 * 1 2 3 30 30 H 1.08996 * 109.46751 * 60.00260 * 1 2 3 31 31 H 1.09002 * 109.46824 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47398 * 305.00335 * 4 2 1 33 33 H 1.09001 * 109.47194 * 65.00515 * 4 2 1 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 36 36 H 1.00899 * 111.00176 * 303.95826 * 6 5 4 37 37 H 1.09002 * 109.47075 * 180.02562 * 9 7 6 38 38 H 1.09001 * 109.47164 * 300.00459 * 9 7 6 39 39 H 1.08998 * 109.46626 * 60.00555 * 9 7 6 40 40 H 1.08002 * 120.44728 * 180.28404 * 12 11 10 41 41 H 1.08002 * 120.80243 * 179.78034 * 13 12 11 42 42 H 1.08000 * 120.44954 * 179.97438 * 14 13 12 43 43 H 0.96998 * 119.99659 * 264.99982 * 16 2 1 44 44 H 1.09001 * 109.47614 * 300.00351 * 19 17 16 45 45 H 1.09001 * 109.46875 * 59.99997 * 19 17 16 46 46 H 0.96994 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.6132 1.3138 6 7 4.0545 -1.3061 2.5129 7 6 5.5180 -1.2225 2.6085 8 1 5.9501 -1.2579 1.6084 9 6 5.9106 0.0912 3.2875 10 6 6.0355 -2.3819 3.4205 11 7 5.4279 -2.6982 4.5464 12 6 5.8510 -3.7127 5.2833 13 6 6.9540 -4.4382 4.8617 14 6 7.5695 -4.0722 3.6750 15 7 7.0868 -3.0489 2.9885 16 7 2.0184 -0.6906 -1.1961 17 6 2.1471 -0.0183 -2.3571 18 8 1.8591 1.1585 -2.4115 19 6 2.6500 -0.7286 -3.5874 20 16 2.7115 0.4345 -4.9728 21 6 3.3145 -0.6307 -6.2402 22 1 3.5238 -1.6672 -6.0201 23 6 3.5214 -0.1377 -7.5210 24 7 3.2667 1.1256 -7.7891 25 14 4.1600 -1.2673 -8.8648 26 1 3.0140 -1.9033 -9.5629 27 1 4.9562 -0.4777 -9.8383 28 1 5.0175 -2.3189 -8.2614 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6053 -0.2616 2.1370 33 1 1.7517 -1.7715 1.2057 34 1 3.9995 -1.0727 0.4261 35 1 3.8532 0.4370 1.3574 36 1 3.6167 -0.9413 3.3455 37 1 6.9966 0.1534 3.3580 38 1 5.5363 0.9297 2.7001 39 1 5.4786 0.1265 4.2876 40 1 5.3458 -3.9696 6.2027 41 1 7.3248 -5.2691 5.4436 42 1 8.4317 -4.6144 3.3156 43 1 2.2491 -1.6318 -1.1525 44 1 3.6493 -1.1205 -3.3978 45 1 1.9777 -1.5509 -3.8324 46 1 3.4109 1.4700 -8.6843 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732675220.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:05 Heat of formation + Delta-G solvation = -24.831292 kcal Electronic energy + Delta-G solvation = -25684.102318 eV Core-core repulsion = 21926.587299 eV Total energy + Delta-G solvation = -3757.515018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.95661 -40.77965 -38.50026 -36.87097 -34.61520 -34.58717 -33.83715 -32.67346 -31.17647 -29.94400 -28.48571 -27.65693 -25.89951 -25.42546 -23.76737 -22.43641 -22.16185 -21.51585 -19.83121 -18.45352 -18.11874 -17.86432 -17.32090 -16.88023 -16.63066 -16.39017 -16.17381 -16.00949 -15.83710 -15.43743 -15.22070 -14.72120 -14.65029 -14.40539 -14.34344 -14.18969 -13.91970 -13.72412 -13.28753 -13.16639 -13.08791 -12.94422 -12.89127 -12.59726 -12.40208 -12.28664 -12.11083 -11.79461 -11.77546 -11.71317 -11.61101 -11.14415 -10.88079 -10.44720 -10.27456 -10.15428 -10.07328 -9.45033 -8.66149 -8.34678 -6.12481 -0.01556 0.21729 1.27521 1.42053 1.47155 1.57997 1.65679 2.26648 2.34929 2.65013 2.87972 2.99210 3.14190 3.32947 3.49781 3.81120 3.91731 3.97290 4.01040 4.10458 4.12146 4.15957 4.25191 4.28732 4.30793 4.42900 4.50285 4.51339 4.56928 4.69232 4.73582 4.77338 4.85427 4.92398 4.96345 5.08771 5.11685 5.23562 5.34492 5.41686 5.50239 5.60609 5.90960 6.13997 6.19800 6.44204 6.55798 7.06535 7.19201 7.29704 8.74512 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011828 B = 0.002107 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.795026 B =13284.861705 C =14938.292519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.066 0.934 4 C -0.106 4.106 5 C 0.061 3.939 6 N -0.673 5.673 7 C 0.151 3.849 8 H 0.089 0.911 9 C -0.166 4.166 10 C 0.317 3.683 11 N -0.520 5.520 12 C 0.135 3.865 13 C -0.222 4.222 14 C 0.132 3.868 15 N -0.550 5.550 16 N -0.708 5.708 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.150 6.150 21 C -0.546 4.546 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.277 1.277 28 H -0.259 1.259 29 H 0.085 0.915 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.355 0.645 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.197 0.803 41 H 0.183 0.817 42 H 0.192 0.808 43 H 0.413 0.587 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.691 -13.179 31.417 34.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.038 3.962 3 H 0.084 0.916 4 C -0.144 4.144 5 C -0.068 4.068 6 N -0.306 5.306 7 C 0.039 3.961 8 H 0.107 0.893 9 C -0.226 4.226 10 C 0.049 3.951 11 N -0.234 5.234 12 C -0.031 4.031 13 C -0.244 4.244 14 C -0.033 4.033 15 N -0.265 5.265 16 N -0.362 5.362 17 C 0.321 3.679 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.078 5.922 21 C -0.694 4.694 22 H 0.099 0.901 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.183 1.183 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.175 0.825 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.214 0.786 41 H 0.200 0.800 42 H 0.209 0.791 43 H 0.250 0.750 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.872 -10.956 30.412 32.556 hybrid contribution 1.283 -1.738 -0.362 2.190 sum 5.155 -12.695 30.050 33.026 Atomic orbital electron populations 1.22126 0.94532 1.02852 1.02127 1.21012 0.94551 0.96796 0.83794 0.91562 1.21716 0.94021 1.02203 0.96433 1.21973 0.95738 0.96293 0.92808 1.60280 1.03287 1.60707 1.06277 1.20073 0.89146 0.89441 0.97428 0.89299 1.22339 1.02352 0.96326 1.01565 1.23057 0.87698 0.94623 0.89745 1.68177 1.31071 1.17667 1.06510 1.23900 0.92401 0.88378 0.98409 1.23291 0.98439 1.03626 0.99008 1.23801 0.98022 0.90708 0.90780 1.68189 1.13641 1.09075 1.35555 1.45925 1.67342 1.14465 1.08496 1.19990 0.76693 0.86566 0.84622 1.90681 1.50811 1.17682 1.85168 1.23387 1.05326 1.03205 0.96306 1.85537 1.86698 1.17275 1.02739 1.23199 1.50882 0.98431 0.96906 0.90064 1.26130 0.95113 0.97224 1.00747 1.70180 1.46879 1.15425 1.22235 0.84955 0.78437 0.77751 0.76846 1.19260 1.20226 1.18287 0.89605 0.94994 0.91061 0.88325 0.89518 0.91843 0.95038 0.82507 0.92252 0.90971 0.91219 0.78582 0.79988 0.79120 0.75029 0.87566 0.87469 0.91994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 9.48 71.98 0.68 -2.55 16 2 C 0.14 3.09 2.57 44.99 0.12 3.20 16 3 H 0.07 1.76 7.58 -2.39 -0.02 1.74 16 4 C -0.11 -1.54 5.01 30.59 0.15 -1.39 16 5 C 0.06 1.05 5.37 86.30 0.46 1.51 16 6 N -0.67 -11.31 6.05 -495.45 -3.00 -14.31 16 7 C 0.15 2.83 2.99 44.17 0.13 2.97 16 8 H 0.09 1.91 7.78 -2.38 -0.02 1.89 16 9 C -0.17 -2.63 9.14 71.98 0.66 -1.97 16 10 C 0.32 6.38 6.59 138.75 0.91 7.30 16 11 N -0.52 -9.14 10.11 -187.85 -1.90 -11.04 16 12 C 0.13 1.50 11.30 84.70 0.96 2.46 16 13 C -0.22 -1.88 10.17 22.44 0.23 -1.66 16 14 C 0.13 1.72 11.31 84.70 0.96 2.67 16 15 N -0.55 -11.21 10.32 -187.84 -1.94 -13.15 16 16 N -0.71 -17.99 4.53 -442.53 -2.00 -20.00 16 17 C 0.54 19.99 7.81 87.66 0.68 20.67 16 18 O -0.57 -26.36 15.52 -3.03 -0.05 -26.40 16 19 C -0.13 -5.32 6.16 71.23 0.44 -4.88 16 20 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 21 C -0.55 -31.71 9.50 67.95 0.65 -31.06 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16 25 Si 1.00 44.22 29.55 68.60 2.03 46.24 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.28 7.67 -2.39 -0.02 1.26 16 35 H 0.03 0.58 7.44 -2.39 -0.02 0.56 16 36 H 0.35 5.24 8.47 -89.70 -0.76 4.48 16 37 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.09 7.45 -2.39 -0.02 1.07 16 39 H 0.07 1.03 8.13 -2.39 -0.02 1.01 16 40 H 0.20 0.76 8.06 -2.91 -0.02 0.74 16 41 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 42 H 0.19 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.41 8.10 8.60 -92.71 -0.80 7.30 16 44 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 45 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 46 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -82.20 402.65 -0.80 -83.00 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.57 Total: 23.08 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: 7.50 Total: -1.53 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -8.55 Total: -114.78 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -82.20 -0.80 -83.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732675220.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds