Wall clock time and date at job start Tue Mar 31 2020 20:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46947 * 240.00202 * 2 1 3 5 5 C 1.53000 * 109.47258 * 63.79733 * 4 2 1 6 6 F 1.39900 * 109.46740 * 54.15339 * 5 4 2 7 7 F 1.39900 * 109.47046 * 174.14803 * 5 4 2 8 8 F 1.39893 * 109.47381 * 294.15062 * 5 4 2 9 9 C 1.50699 * 109.47070 * 120.00033 * 2 1 3 10 10 O 1.21281 * 119.99637 * 120.00185 * 9 2 1 11 11 N 1.34771 * 119.99943 * 299.99778 * 9 2 1 12 12 C 1.46501 * 119.99961 * 184.73979 * 11 9 2 13 13 C 1.53004 * 109.46320 * 55.19470 * 12 11 9 14 14 O 1.42896 * 109.46915 * 54.38556 * 13 12 11 15 15 C 1.53045 * 109.45221 * 175.16385 * 12 11 9 16 16 C 1.53189 * 109.31129 * 58.64521 * 15 12 11 17 17 N 1.46931 * 108.77654 * 54.63673 * 16 15 12 18 18 C 1.36936 * 120.63027 * 126.36907 * 17 16 15 19 19 H 1.07997 * 119.99896 * 216.31311 * 18 17 16 20 20 C 1.38818 * 119.99999 * 36.31040 * 18 17 16 21 21 N 1.31616 * 119.99664 * 6.32659 * 20 18 17 22 22 Si 1.86793 * 119.99837 * 186.32811 * 20 18 17 23 23 H 1.48501 * 109.47386 * 90.00132 * 22 20 18 24 24 H 1.48497 * 109.47046 * 209.99799 * 22 20 18 25 25 H 1.48498 * 109.47311 * 329.99717 * 22 20 18 26 26 C 1.46925 * 118.73799 * 306.39238 * 17 16 15 27 27 C 1.53047 * 109.45733 * 295.22310 * 12 11 9 28 28 H 1.09002 * 109.46917 * 289.16391 * 1 2 3 29 29 H 1.09003 * 109.47834 * 49.16051 * 1 2 3 30 30 H 1.09002 * 109.47389 * 169.16928 * 1 2 3 31 31 H 1.08994 * 109.47063 * 183.80226 * 4 2 1 32 32 H 1.09008 * 109.46577 * 303.79954 * 4 2 1 33 33 H 0.97001 * 120.00711 * 4.73405 * 11 9 2 34 34 H 1.09007 * 109.47024 * 294.38588 * 13 12 11 35 35 H 1.09001 * 109.47280 * 174.38517 * 13 12 11 36 36 H 0.96698 * 113.99941 * 179.97438 * 14 13 12 37 37 H 1.08995 * 109.49728 * 178.59621 * 15 12 11 38 38 H 1.08998 * 109.49180 * 298.69685 * 15 12 11 39 39 H 1.09003 * 109.58846 * 294.84777 * 16 15 12 40 40 H 1.08997 * 109.59059 * 174.42746 * 16 15 12 41 41 H 0.97001 * 119.99486 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.58354 * 293.81812 * 26 17 16 43 43 H 1.08997 * 109.70210 * 173.46507 * 26 17 16 44 44 H 1.09000 * 109.49441 * 61.31391 * 27 12 11 45 45 H 1.08999 * 109.49684 * 181.40333 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6094 0.0531 -2.4967 6 9 2.0328 1.3822 -2.3896 7 9 2.1864 -0.5302 -3.6299 8 9 0.2157 0.0153 -2.6111 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1191 11 7 1.7067 -0.2499 2.4545 12 6 2.2784 -0.8768 3.6489 13 6 3.8050 -0.8692 3.5475 14 8 4.2604 0.4656 3.3175 15 6 1.8459 -0.0949 4.8914 16 6 0.3162 -0.0754 4.9707 17 7 -0.1774 -1.4586 4.9261 18 6 -1.0204 -1.9301 5.8967 19 1 -0.9361 -2.9522 6.2351 20 6 -1.9834 -1.0944 6.4456 21 7 -2.1698 0.1101 5.9488 22 14 -3.0144 -1.6792 7.8892 23 1 -2.3353 -1.3203 9.1602 24 1 -4.3486 -1.0290 7.8402 25 1 -3.1791 -3.1531 7.8150 26 6 0.2512 -2.3263 3.8206 27 6 1.7816 -2.3206 3.7542 28 1 -0.3633 0.3374 0.9707 29 1 -0.3635 0.6720 -0.7775 30 1 -0.3634 -1.0094 -0.1931 31 1 3.1277 -0.7806 -1.2159 32 1 1.6220 -1.7274 -1.2839 33 1 1.0940 0.4966 2.5448 34 1 4.1175 -1.5072 2.7208 35 1 4.2328 -1.2438 4.4775 36 1 5.2211 0.5461 3.2428 37 1 2.2503 -0.5751 5.7824 38 1 2.2200 0.9268 4.8266 39 1 -0.0864 0.4837 4.1260 40 1 0.0046 0.3939 5.9038 41 1 -2.8424 0.6942 6.3326 42 1 -0.1567 -1.9508 2.8821 43 1 -0.1033 -3.3425 3.9925 44 1 2.1100 -2.8829 2.8801 45 1 2.1867 -2.7798 4.6559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733914604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:47 Heat of formation + Delta-G solvation = -227.601010 kcal Electronic energy + Delta-G solvation = -31952.086689 eV Core-core repulsion = 27168.876553 eV Total energy + Delta-G solvation = -4783.210135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.27838 -47.76838 -47.72905 -40.39863 -37.90472 -36.13333 -34.92875 -34.07835 -31.99718 -30.47455 -29.95976 -28.87368 -26.72031 -24.95267 -23.90430 -22.94792 -22.29277 -20.99597 -20.00615 -18.78582 -18.71376 -18.67212 -17.60124 -17.17069 -16.91024 -16.32058 -15.40127 -15.21896 -14.88835 -14.76560 -14.63546 -14.47035 -14.21288 -14.16466 -13.92545 -13.87244 -13.74281 -13.57951 -13.34264 -13.07734 -12.97270 -12.68045 -12.42422 -12.19331 -11.81846 -11.71764 -11.54239 -11.44841 -11.28016 -11.23461 -10.95140 -10.81926 -10.43250 -10.31964 -10.07734 -9.90874 -9.80723 -9.61297 -9.08712 -8.62995 -8.51265 -6.57810 -5.83748 -3.36117 2.58208 2.83329 3.30760 3.34112 3.41238 3.42342 3.73872 3.89844 3.92944 4.41087 4.45627 4.53736 4.72443 4.83566 5.09046 5.29465 5.34624 5.36732 5.44848 5.47912 5.51807 5.60963 5.68695 5.72264 5.81554 5.94436 6.05590 6.15241 6.26248 6.29116 6.53574 6.55050 6.61996 6.79076 6.90273 7.00786 7.25542 7.56964 7.75029 7.76250 7.86242 8.46159 8.47329 9.19503 9.78568 10.40008 11.24411 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003366 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.727697 B = 8315.960171 C = 9332.897289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 H 0.108 0.892 4 C -0.145 4.145 5 C 0.452 3.548 6 F -0.184 7.184 7 F -0.186 7.186 8 F -0.180 7.180 9 C 0.530 3.470 10 O -0.551 6.551 11 N -0.693 5.693 12 C 0.194 3.806 13 C 0.062 3.938 14 O -0.567 6.567 15 C -0.144 4.144 16 C 0.175 3.825 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.061 0.939 20 C 0.011 3.989 21 N -0.903 5.903 22 Si 0.903 3.097 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.153 3.847 27 C -0.143 4.143 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.403 0.597 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.017 0.983 40 H 0.085 0.915 41 H 0.254 0.746 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.072 0.928 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.707 1.642 -12.999 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.136 4.136 3 H 0.126 0.874 4 C -0.183 4.183 5 C 0.398 3.602 6 F -0.166 7.166 7 F -0.167 7.167 8 F -0.161 7.161 9 C 0.315 3.685 10 O -0.430 6.430 11 N -0.343 5.343 12 C 0.108 3.892 13 C -0.016 4.016 14 O -0.371 6.371 15 C -0.184 4.184 16 C 0.049 3.951 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.079 0.921 20 C -0.189 4.189 21 N -0.547 5.547 22 Si 0.733 3.267 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.027 3.973 27 C -0.183 4.183 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.239 0.761 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.216 0.784 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.104 0.896 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.398 1.212 -12.993 16.686 hybrid contribution -0.300 0.164 0.609 0.699 sum 10.098 1.376 -12.384 16.038 Atomic orbital electron populations 1.22100 0.91620 1.03830 1.04081 1.21272 0.98765 1.01250 0.92344 0.87394 1.22683 1.05672 1.00759 0.89213 1.20634 0.75051 0.78343 0.86134 1.93177 1.89840 1.37380 1.96198 1.93183 1.84515 1.84100 1.54943 1.93173 1.30197 1.96305 1.96451 1.19971 0.80004 0.84104 0.84377 1.90605 1.39391 1.26137 1.86860 1.45898 1.47547 1.36076 1.04798 1.20313 0.89544 0.94210 0.85154 1.22753 0.95149 0.83773 0.99951 1.86481 1.26321 1.28572 1.95717 1.22484 1.01735 0.99014 0.95121 1.20720 0.86461 0.86541 1.01342 1.43949 1.53671 1.08958 1.24733 1.19135 1.08693 0.97510 1.13327 0.92086 1.25284 0.96752 0.97107 0.99708 1.69934 1.35020 1.08114 1.41613 0.86285 0.79737 0.78310 0.82349 1.21393 1.21636 1.20387 1.20811 0.90358 0.95046 0.91122 1.22387 0.99892 0.94254 1.01770 0.90868 0.90680 0.91332 0.86611 0.86521 0.76067 0.91688 0.93630 0.78449 0.91355 0.91933 0.96530 0.89630 0.93569 0.96505 0.92900 0.90947 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 8.17 37.16 0.30 -1.48 16 2 C -0.11 -1.28 2.63 -91.77 -0.24 -1.52 16 3 H 0.11 1.10 7.55 -51.93 -0.39 0.71 16 4 C -0.14 -1.45 4.16 -26.73 -0.11 -1.56 16 5 C 0.45 4.59 3.10 37.16 0.12 4.71 16 6 F -0.18 -1.97 16.50 2.25 0.04 -1.93 16 7 F -0.19 -1.98 17.32 2.25 0.04 -1.94 16 8 F -0.18 -1.94 14.37 2.25 0.03 -1.91 16 9 C 0.53 7.56 6.57 -10.99 -0.07 7.48 16 10 O -0.55 -8.92 12.26 5.56 0.07 -8.85 16 11 N -0.69 -10.52 3.76 -47.56 -0.18 -10.70 16 12 C 0.19 3.17 0.44 -131.77 -0.06 3.11 16 13 C 0.06 0.90 5.53 37.16 0.21 1.11 16 14 O -0.57 -7.61 12.94 -35.23 -0.46 -8.07 16 15 C -0.14 -2.60 4.89 -26.61 -0.13 -2.73 16 16 C 0.18 3.87 4.94 -3.71 -0.02 3.86 16 17 N -0.59 -14.05 2.96 -172.32 -0.51 -14.56 16 18 C -0.26 -6.82 9.54 -15.06 -0.14 -6.97 16 19 H 0.06 1.62 7.84 -52.49 -0.41 1.21 16 20 C 0.01 0.29 5.12 -17.43 -0.09 0.20 16 21 N -0.90 -25.12 11.19 55.49 0.62 -24.50 16 22 Si 0.90 21.17 29.56 -169.99 -5.02 16.14 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.15 3.16 6.25 -3.71 -0.02 3.14 16 27 C -0.14 -2.53 4.74 -26.61 -0.13 -2.65 16 28 H 0.07 0.90 7.19 -51.93 -0.37 0.52 16 29 H 0.07 0.77 6.25 -51.93 -0.32 0.45 16 30 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 31 H 0.12 1.12 7.99 -51.93 -0.42 0.70 16 32 H 0.12 1.16 8.13 -51.92 -0.42 0.73 16 33 H 0.40 6.07 6.32 -40.82 -0.26 5.81 16 34 H 0.07 0.99 6.19 -51.93 -0.32 0.67 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.37 3.32 9.12 45.56 0.42 3.74 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.08 7.81 -51.93 -0.41 0.67 16 39 H 0.02 0.38 6.85 -51.93 -0.36 0.02 16 40 H 0.09 2.17 6.36 -51.93 -0.33 1.83 16 41 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.02 0.36 7.74 -51.93 -0.40 -0.04 16 43 H 0.05 1.10 7.94 -51.93 -0.41 0.69 16 44 H 0.07 1.27 6.40 -51.93 -0.33 0.94 16 45 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 358.75 15.07 5.41 5.41 Total: -1.00 -29.79 358.75 -5.92 -35.71 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -5.56 Total: 8.52 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.39 Total: 6.68 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.07 Total: -49.76 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.39 Total: -16.92 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.11 Total: -5.78 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.79 -5.92 -35.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.892 kcal (2) G-P(sol) polarization free energy of solvation -29.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -221.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds