Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47002 * 2 1 4 4 C 1.53002 * 109.46947 * 240.00202 * 2 1 3 5 5 C 1.53000 * 109.47258 * 63.79733 * 4 2 1 6 6 F 1.39900 * 109.46740 * 54.15339 * 5 4 2 7 7 F 1.39900 * 109.47046 * 174.14803 * 5 4 2 8 8 F 1.39893 * 109.47381 * 294.15062 * 5 4 2 9 9 C 1.50699 * 109.47070 * 120.00033 * 2 1 3 10 10 O 1.21281 * 119.99637 * 120.00185 * 9 2 1 11 11 N 1.34771 * 119.99943 * 299.99778 * 9 2 1 12 12 C 1.46501 * 119.99961 * 184.73979 * 11 9 2 13 13 C 1.53004 * 109.46320 * 55.19470 * 12 11 9 14 14 O 1.42896 * 109.46915 * 54.38556 * 13 12 11 15 15 C 1.53045 * 109.45221 * 175.16385 * 12 11 9 16 16 C 1.53189 * 109.31129 * 58.64521 * 15 12 11 17 17 N 1.46931 * 108.77654 * 54.63673 * 16 15 12 18 18 C 1.36936 * 120.63027 * 126.36907 * 17 16 15 19 19 H 1.07997 * 119.99896 * 216.31311 * 18 17 16 20 20 C 1.38818 * 119.99999 * 36.31040 * 18 17 16 21 21 N 1.31616 * 119.99664 * 6.32659 * 20 18 17 22 22 Si 1.86793 * 119.99837 * 186.32811 * 20 18 17 23 23 H 1.48501 * 109.47386 * 90.00132 * 22 20 18 24 24 H 1.48497 * 109.47046 * 209.99799 * 22 20 18 25 25 H 1.48498 * 109.47311 * 329.99717 * 22 20 18 26 26 C 1.46925 * 118.73799 * 306.39238 * 17 16 15 27 27 C 1.53047 * 109.45733 * 295.22310 * 12 11 9 28 28 H 1.09002 * 109.46917 * 289.16391 * 1 2 3 29 29 H 1.09003 * 109.47834 * 49.16051 * 1 2 3 30 30 H 1.09002 * 109.47389 * 169.16928 * 1 2 3 31 31 H 1.08994 * 109.47063 * 183.80226 * 4 2 1 32 32 H 1.09008 * 109.46577 * 303.79954 * 4 2 1 33 33 H 0.97001 * 120.00711 * 4.73405 * 11 9 2 34 34 H 1.09007 * 109.47024 * 294.38588 * 13 12 11 35 35 H 1.09001 * 109.47280 * 174.38517 * 13 12 11 36 36 H 0.96698 * 113.99941 * 179.97438 * 14 13 12 37 37 H 1.08995 * 109.49728 * 178.59621 * 15 12 11 38 38 H 1.08998 * 109.49180 * 298.69685 * 15 12 11 39 39 H 1.09003 * 109.58846 * 294.84777 * 16 15 12 40 40 H 1.08997 * 109.59059 * 174.42746 * 16 15 12 41 41 H 0.97001 * 119.99486 * 180.02562 * 21 20 18 42 42 H 1.09005 * 109.58354 * 293.81812 * 26 17 16 43 43 H 1.08997 * 109.70210 * 173.46507 * 26 17 16 44 44 H 1.09000 * 109.49441 * 61.31391 * 27 12 11 45 45 H 1.08999 * 109.49684 * 181.40333 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6094 0.0531 -2.4967 6 9 2.0328 1.3822 -2.3896 7 9 2.1864 -0.5302 -3.6299 8 9 0.2157 0.0153 -2.6111 9 6 2.0323 -0.7104 1.2305 10 8 2.7296 -1.6965 1.1191 11 7 1.7067 -0.2499 2.4545 12 6 2.2784 -0.8768 3.6489 13 6 3.8050 -0.8692 3.5475 14 8 4.2604 0.4656 3.3175 15 6 1.8459 -0.0949 4.8914 16 6 0.3162 -0.0754 4.9707 17 7 -0.1774 -1.4586 4.9261 18 6 -1.0204 -1.9301 5.8967 19 1 -0.9361 -2.9522 6.2351 20 6 -1.9834 -1.0944 6.4456 21 7 -2.1698 0.1101 5.9488 22 14 -3.0144 -1.6792 7.8892 23 1 -2.3353 -1.3203 9.1602 24 1 -4.3486 -1.0290 7.8402 25 1 -3.1791 -3.1531 7.8150 26 6 0.2512 -2.3263 3.8206 27 6 1.7816 -2.3206 3.7542 28 1 -0.3633 0.3374 0.9707 29 1 -0.3635 0.6720 -0.7775 30 1 -0.3634 -1.0094 -0.1931 31 1 3.1277 -0.7806 -1.2159 32 1 1.6220 -1.7274 -1.2839 33 1 1.0940 0.4966 2.5448 34 1 4.1175 -1.5072 2.7208 35 1 4.2328 -1.2438 4.4775 36 1 5.2211 0.5461 3.2428 37 1 2.2503 -0.5751 5.7824 38 1 2.2200 0.9268 4.8266 39 1 -0.0864 0.4837 4.1260 40 1 0.0046 0.3939 5.9038 41 1 -2.8424 0.6942 6.3326 42 1 -0.1567 -1.9508 2.8821 43 1 -0.1033 -3.3425 3.9925 44 1 2.1100 -2.8829 2.8801 45 1 2.1867 -2.7798 4.6559 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733914604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -247.329402 kcal Electronic energy + Delta-G solvation = -31952.942176 eV Core-core repulsion = 27168.876553 eV Total energy + Delta-G solvation = -4784.065623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.10678 -48.60004 -48.55849 -41.63698 -39.23219 -37.42026 -35.93023 -35.58608 -33.63757 -31.98866 -31.59653 -29.83232 -28.30907 -25.90213 -25.60576 -24.05691 -23.78370 -22.49305 -21.20831 -20.14425 -19.62071 -19.51172 -18.78745 -18.49415 -18.10147 -17.52090 -16.84252 -16.44333 -16.41020 -15.86608 -15.65284 -15.54349 -15.43017 -15.25380 -15.03449 -15.01425 -14.80362 -14.71923 -14.67890 -14.46846 -14.18711 -14.05333 -13.66486 -13.28433 -13.18438 -13.07336 -12.92826 -12.67198 -12.64595 -12.53488 -12.37582 -12.25331 -12.18085 -11.95975 -11.83538 -11.43600 -11.27666 -11.00304 -10.54121 -10.31739 -9.87684 -8.52198 -7.86152 -5.41483 1.47474 1.48788 1.57100 1.69833 1.73419 2.24935 2.50939 2.89129 3.01453 3.11682 3.28472 3.34396 3.60525 3.73609 3.80167 3.85349 4.02241 4.03845 4.22749 4.31880 4.47818 4.52409 4.57764 4.64054 4.68576 4.73758 4.77233 4.78482 4.91902 4.94852 5.05043 5.13906 5.23211 5.23604 5.31074 5.47784 5.66533 5.68274 5.75677 6.45594 6.66282 6.92791 7.19804 7.29927 7.86032 8.41790 9.18787 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.003366 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.727697 B = 8315.960171 C = 9332.897289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 H 0.123 0.877 4 C -0.139 4.139 5 C 0.458 3.542 6 F -0.186 7.186 7 F -0.188 7.188 8 F -0.183 7.183 9 C 0.529 3.471 10 O -0.568 6.568 11 N -0.696 5.696 12 C 0.193 3.807 13 C 0.074 3.926 14 O -0.576 6.576 15 C -0.127 4.127 16 C 0.185 3.815 17 N -0.605 5.605 18 C -0.269 4.269 19 H 0.058 0.942 20 C -0.037 4.037 21 N -0.928 5.928 22 Si 0.964 3.036 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.272 1.272 26 C 0.155 3.845 27 C -0.130 4.130 28 H 0.059 0.941 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.118 0.882 33 H 0.403 0.597 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.392 0.608 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.008 0.992 40 H 0.049 0.951 41 H 0.251 0.749 42 H 0.013 0.987 43 H 0.045 0.955 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.896 1.580 -13.599 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.128 4.128 3 H 0.141 0.859 4 C -0.177 4.177 5 C 0.404 3.596 6 F -0.167 7.167 7 F -0.169 7.169 8 F -0.165 7.165 9 C 0.316 3.684 10 O -0.448 6.448 11 N -0.346 5.346 12 C 0.107 3.893 13 C -0.005 4.005 14 O -0.384 6.384 15 C -0.167 4.167 16 C 0.059 3.941 17 N -0.329 5.329 18 C -0.400 4.400 19 H 0.076 0.924 20 C -0.233 4.233 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.211 1.211 24 H -0.220 1.220 25 H -0.197 1.197 26 C 0.029 3.971 27 C -0.170 4.170 28 H 0.078 0.922 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.239 0.761 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.026 0.974 40 H 0.068 0.932 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.063 0.937 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.623 1.145 -13.612 17.936 hybrid contribution -0.658 0.181 0.756 1.019 sum 10.965 1.326 -12.856 16.949 Atomic orbital electron populations 1.22067 0.91714 1.03768 1.03707 1.21226 0.98489 1.01769 0.91324 0.85935 1.22636 1.06094 1.00588 0.88421 1.20565 0.74786 0.78179 0.86032 1.93176 1.89836 1.37540 1.96195 1.93182 1.84529 1.84134 1.55055 1.93168 1.30555 1.96312 1.96461 1.20403 0.79435 0.83845 0.84713 1.90595 1.40190 1.26934 1.87116 1.45906 1.47693 1.36110 1.04919 1.20213 0.91323 0.92865 0.84881 1.22494 0.93249 0.84337 1.00372 1.86423 1.28541 1.27692 1.95695 1.22237 0.98326 1.00027 0.96065 1.20507 0.89106 0.85441 0.99056 1.44141 1.53773 1.09753 1.25189 1.19395 1.09094 0.97491 1.13980 0.92447 1.25939 0.97921 0.97304 1.02150 1.70078 1.35487 1.08927 1.42811 0.85334 0.77894 0.78015 0.79541 1.21109 1.22011 1.19686 1.20835 0.92473 0.93950 0.89840 1.22208 0.97311 0.95538 1.01959 0.92158 0.89552 0.91801 0.85868 0.86361 0.76080 0.92069 0.92512 0.75946 0.91738 0.90806 0.97406 0.93204 0.94022 0.96936 0.93673 0.90453 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 8.17 71.98 0.59 -2.73 16 2 C -0.11 -2.20 2.63 -11.54 -0.03 -2.23 16 3 H 0.12 2.21 7.55 -2.39 -0.02 2.19 16 4 C -0.14 -2.51 4.16 30.59 0.13 -2.38 16 5 C 0.46 8.45 3.10 71.98 0.22 8.67 16 6 F -0.19 -3.59 16.50 44.97 0.74 -2.84 16 7 F -0.19 -3.66 17.32 44.97 0.78 -2.88 16 8 F -0.18 -3.65 14.37 44.97 0.65 -3.01 16 9 C 0.53 14.25 6.57 87.66 0.58 14.83 16 10 O -0.57 -17.37 12.26 -3.03 -0.04 -17.40 16 11 N -0.70 -20.31 3.76 -422.78 -1.59 -21.90 16 12 C 0.19 6.06 0.44 3.63 0.00 6.06 16 13 C 0.07 1.97 5.53 71.98 0.40 2.37 16 14 O -0.58 -13.85 12.94 -148.98 -1.93 -15.78 16 15 C -0.13 -4.49 4.89 30.67 0.15 -4.34 16 16 C 0.18 8.27 4.94 86.36 0.43 8.69 16 17 N -0.60 -29.12 2.96 -699.09 -2.07 -31.19 16 18 C -0.27 -14.46 9.54 84.04 0.80 -13.66 16 19 H 0.06 3.07 7.84 -2.91 -0.02 3.04 16 20 C -0.04 -1.98 5.12 84.86 0.43 -1.55 16 21 N -0.93 -52.61 11.19 21.65 0.24 -52.37 16 22 Si 0.96 43.85 29.56 68.60 2.03 45.88 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 26 C 0.15 6.39 6.25 86.36 0.54 6.93 16 27 C -0.13 -4.47 4.74 30.67 0.15 -4.33 16 28 H 0.06 1.45 7.19 -2.39 -0.02 1.43 16 29 H 0.09 1.65 6.25 -2.39 -0.01 1.64 16 30 H 0.06 1.42 8.09 -2.39 -0.02 1.40 16 31 H 0.12 2.09 7.99 -2.39 -0.02 2.07 16 32 H 0.12 2.14 8.13 -2.38 -0.02 2.12 16 33 H 0.40 11.85 6.32 -92.71 -0.59 11.27 16 34 H 0.06 1.71 6.19 -2.38 -0.01 1.69 16 35 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.39 5.77 9.12 -74.06 -0.68 5.10 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.07 2.45 7.81 -2.39 -0.02 2.43 16 39 H 0.01 0.36 6.85 -2.39 -0.02 0.35 16 40 H 0.05 2.59 6.36 -2.39 -0.02 2.57 16 41 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 42 H 0.01 0.53 7.74 -2.38 -0.02 0.52 16 43 H 0.04 1.89 7.94 -2.39 -0.02 1.88 16 44 H 0.08 2.61 6.40 -2.39 -0.02 2.60 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -62.92 358.75 2.98 -59.95 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.22 Total: 25.22 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 4.38 Total: 16.33 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.42 Total: -105.46 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.97 Total: -33.18 kcal Atomic # 9 Polarization: -10.90 SS G_CDS: 2.17 Total: -8.73 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -62.92 2.98 -59.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733914604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -187.382 kcal (2) G-P(sol) polarization free energy of solvation -62.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds