Wall clock time and date at job start Tue Mar 31 2020 20:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46353 * 2 1 4 4 C 1.52995 * 109.46841 * 240.00412 * 2 1 3 5 5 C 1.50697 * 109.47543 * 65.00095 * 4 2 1 6 6 C 1.38258 * 119.99752 * 89.99389 * 5 4 2 7 7 C 1.38221 * 120.02585 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.01515 * 0.02562 * 7 6 5 9 9 C 1.38328 * 119.98768 * 0.02562 * 8 7 6 10 10 Cl 1.73601 * 120.01522 * 179.97438 * 9 8 7 11 11 C 1.38196 * 119.98753 * 269.72572 * 5 4 2 12 12 C 1.50699 * 109.47210 * 120.00034 * 2 1 3 13 13 O 1.21283 * 119.99943 * 114.43983 * 12 2 1 14 14 N 1.34770 * 119.99982 * 294.43820 * 12 2 1 15 15 C 1.46506 * 120.00418 * 355.12697 * 14 12 2 16 16 C 1.46504 * 119.99996 * 175.12798 * 14 12 2 17 17 C 1.52996 * 109.47573 * 89.99861 * 16 14 12 18 18 H 1.08996 * 109.47321 * 295.00616 * 17 16 14 19 19 C 1.52998 * 109.47456 * 174.99917 * 17 16 14 20 20 N 1.46505 * 109.47014 * 54.99959 * 17 16 14 21 21 C 1.36929 * 120.00234 * 204.99985 * 20 17 16 22 22 H 1.08001 * 119.99950 * 0.02562 * 21 20 17 23 23 C 1.38813 * 120.00270 * 179.97438 * 21 20 17 24 24 N 1.31622 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00434 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47001 * 60.00147 * 25 23 21 27 27 H 1.48495 * 109.47469 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46882 * 300.00266 * 25 23 21 29 29 H 1.09006 * 109.47190 * 290.29110 * 1 2 3 30 30 H 1.09000 * 109.47389 * 50.29254 * 1 2 3 31 31 H 1.08998 * 109.47085 * 170.29333 * 1 2 3 32 32 H 1.09007 * 109.46771 * 184.99701 * 4 2 1 33 33 H 1.08997 * 109.47146 * 304.99559 * 4 2 1 34 34 H 1.07997 * 119.98652 * 0.02755 * 6 5 4 35 35 H 1.08000 * 119.99368 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.00655 * 179.97438 * 8 7 6 37 37 H 1.07997 * 120.00912 * 0.02562 * 11 5 4 38 38 H 1.08997 * 109.46847 * 264.12342 * 15 14 12 39 39 H 1.09002 * 109.46718 * 24.12482 * 15 14 12 40 40 H 1.09003 * 109.47230 * 144.12136 * 15 14 12 41 41 H 1.09002 * 109.47329 * 210.00022 * 16 14 12 42 42 H 1.08999 * 109.46662 * 329.99904 * 16 14 12 43 43 H 1.08999 * 109.47244 * 300.00140 * 19 17 16 44 44 H 1.09003 * 109.46787 * 60.00560 * 19 17 16 45 45 H 1.09000 * 109.47083 * 179.97438 * 19 17 16 46 46 H 0.97002 * 119.99800 * 25.00243 * 20 17 16 47 47 H 0.97003 * 119.99833 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 2.4816 1.0333 -2.9792 7 6 2.1163 1.7479 -4.1045 8 6 0.9103 1.4873 -4.7279 9 6 0.0687 0.5116 -4.2249 10 17 -1.4463 0.1842 -5.0067 11 6 0.4384 -0.2088 -3.1027 12 6 2.0324 -0.7104 1.2304 13 8 2.6443 -1.7520 1.1220 14 7 1.8018 -0.1883 2.4513 15 6 1.1574 1.1213 2.5783 16 6 2.1954 -0.9304 3.6516 17 6 3.6254 -0.5499 4.0405 18 1 4.3132 -0.8768 3.2608 19 6 3.9924 -1.2284 5.3618 20 7 3.7188 0.9040 4.1957 21 6 4.9236 1.5339 4.0332 22 1 5.8051 0.9591 3.7902 23 6 5.0120 2.9114 4.1797 24 7 3.9377 3.6120 4.4754 25 14 6.6556 3.7709 3.9573 26 1 7.1618 3.5232 2.5834 27 1 6.4829 5.2310 4.1659 28 1 7.6287 3.2418 4.9464 29 1 -0.3634 0.3564 0.9639 30 1 -0.3634 0.6565 -0.7906 31 1 -0.3633 -1.0129 -0.1733 32 1 3.1263 -0.7993 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 3.4237 1.2375 -2.4923 35 1 2.7732 2.5100 -4.4970 36 1 0.6248 2.0461 -5.6069 37 1 -0.2161 -0.9741 -2.7123 38 1 1.9199 1.8916 2.6940 39 1 0.5683 1.3245 1.6840 40 1 0.5047 1.1220 3.4513 41 1 1.5186 -0.6837 4.4696 42 1 2.1464 -2.0004 3.4496 43 1 3.3045 -0.9013 6.1415 44 1 3.9230 -2.3100 5.2462 45 1 5.0113 -0.9576 5.6385 46 1 2.9270 1.4203 4.4136 47 1 3.9995 4.5746 4.5781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734360777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:05 Heat of formation + Delta-G solvation = -11.889293 kcal Electronic energy + Delta-G solvation = -27370.224968 eV Core-core repulsion = 23578.934699 eV Total energy + Delta-G solvation = -3791.290268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.20949 -39.32758 -36.80094 -36.35774 -34.97706 -34.14493 -32.11021 -30.98439 -30.92480 -28.79673 -27.15159 -26.53884 -25.85147 -23.80940 -23.01831 -22.76149 -21.16310 -19.99968 -18.60449 -17.28435 -17.25112 -16.60881 -15.93270 -15.84864 -15.54995 -15.08367 -14.74271 -14.31060 -14.10206 -13.90154 -13.74085 -13.45818 -13.22367 -13.01539 -12.75744 -12.37654 -12.29279 -12.18054 -12.02827 -11.89761 -11.70468 -11.61611 -11.50844 -11.31380 -11.22694 -11.03933 -10.97225 -10.87896 -10.83280 -10.69665 -10.35436 -10.09664 -9.64622 -9.34692 -9.08606 -8.92989 -8.83168 -8.08489 -6.93970 -5.78293 -3.04687 0.95125 1.04548 1.89624 3.01082 3.32830 3.42522 3.47316 3.48298 3.52190 4.45173 4.58988 4.59466 4.75150 4.87409 4.90437 5.00656 5.12734 5.17720 5.30608 5.40117 5.46138 5.53842 5.59104 5.63046 5.68867 5.69222 5.74236 5.85846 5.88893 5.94230 5.98876 6.10985 6.12785 6.13897 6.16646 6.29636 6.35340 6.40287 6.51975 6.60113 6.66860 6.85889 6.89987 7.18164 7.70501 7.82894 8.41362 8.57095 9.52623 10.09374 10.45851 11.44513 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002856 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.341504 B = 9801.997466 C =11055.607552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.104 4.104 3 H 0.099 0.901 4 C -0.061 4.061 5 C -0.061 4.061 6 C -0.110 4.110 7 C -0.104 4.104 8 C -0.119 4.119 9 C -0.034 4.034 10 Cl -0.077 7.077 11 C -0.106 4.106 12 C 0.520 3.480 13 O -0.552 6.552 14 N -0.592 5.592 15 C 0.061 3.939 16 C 0.112 3.888 17 C 0.155 3.845 18 H 0.052 0.948 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.229 4.229 22 H 0.067 0.933 23 C -0.014 4.014 24 N -0.936 5.936 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.037 0.963 45 H 0.055 0.945 46 H 0.382 0.618 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 -5.942 -15.255 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 H 0.117 0.883 4 C -0.099 4.099 5 C -0.061 4.061 6 C -0.128 4.128 7 C -0.123 4.123 8 C -0.137 4.137 9 C -0.061 4.061 10 Cl -0.048 7.048 11 C -0.125 4.125 12 C 0.308 3.692 13 O -0.430 6.430 14 N -0.323 5.323 15 C -0.081 4.081 16 C -0.012 4.012 17 C 0.044 3.956 18 H 0.070 0.930 19 C -0.223 4.223 20 N -0.362 5.362 21 C -0.361 4.361 22 H 0.085 0.915 23 C -0.210 4.210 24 N -0.585 5.585 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.216 0.784 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.766 -6.450 -15.395 19.863 hybrid contribution 0.589 0.935 0.053 1.106 sum -10.177 -5.515 -15.343 19.219 Atomic orbital electron populations 1.22052 0.93139 1.02647 1.03160 1.21222 0.97442 1.01269 0.92593 0.88272 1.20438 1.02567 0.97907 0.88995 1.19899 0.93462 0.96324 0.96415 1.21292 1.00115 0.95286 0.96075 1.21131 0.95920 0.99554 0.95648 1.21028 0.94250 0.97615 1.00842 1.20912 0.88933 0.99703 0.96517 1.98367 1.31208 1.94935 1.80322 1.20984 0.96947 1.00106 0.94471 1.20360 0.79289 0.85148 0.84429 1.90649 1.41302 1.24631 1.86453 1.47538 1.59284 1.19913 1.05561 1.22257 0.98667 0.85243 1.01980 1.21836 0.97226 0.96180 0.85920 1.20646 0.93760 0.86372 0.94830 0.93032 1.22374 1.01986 0.98203 0.99737 1.42399 1.09104 1.00257 1.84410 1.19183 0.87664 0.90024 1.39196 0.91534 1.24656 0.97017 0.96277 1.03029 1.69623 1.27067 1.06103 1.55740 0.86316 0.83719 0.78611 0.77853 1.21436 1.21770 1.21432 0.90910 0.91513 0.92144 0.89665 0.90024 0.85054 0.85058 0.85212 0.84973 0.89528 0.90780 0.91849 0.91150 0.90439 0.93534 0.94368 0.92632 0.78377 0.93606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.95 37.16 0.30 -1.29 16 2 C -0.10 -1.33 1.88 -91.77 -0.17 -1.50 16 3 H 0.10 1.31 7.73 -51.93 -0.40 0.91 16 4 C -0.06 -0.73 4.14 -27.89 -0.12 -0.85 16 5 C -0.06 -0.64 4.72 -104.63 -0.49 -1.14 16 6 C -0.11 -1.12 9.70 -39.58 -0.38 -1.51 16 7 C -0.10 -0.95 10.05 -39.59 -0.40 -1.34 16 8 C -0.12 -1.08 9.83 -39.55 -0.39 -1.47 16 9 C -0.03 -0.34 6.32 -39.49 -0.25 -0.59 16 10 Cl -0.08 -0.72 28.96 -51.86 -1.50 -2.22 16 11 C -0.11 -1.07 8.03 -39.54 -0.32 -1.38 16 12 C 0.52 8.59 6.98 -10.99 -0.08 8.52 16 13 O -0.55 -10.73 15.61 5.56 0.09 -10.64 16 14 N -0.59 -9.72 2.73 -181.57 -0.50 -10.21 16 15 C 0.06 0.92 8.69 59.85 0.52 1.44 16 16 C 0.11 1.89 5.04 -4.04 -0.02 1.87 16 17 C 0.15 3.12 3.20 -67.93 -0.22 2.91 16 18 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 19 C -0.16 -2.96 9.49 37.16 0.35 -2.61 16 20 N -0.72 -17.16 4.34 -53.43 -0.23 -17.39 16 21 C -0.23 -6.20 9.93 -15.06 -0.15 -6.35 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 24 N -0.94 -26.77 13.06 55.49 0.72 -26.05 16 25 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.07 0.74 5.40 -51.93 -0.28 0.46 16 30 H 0.07 0.64 6.94 -51.93 -0.36 0.28 16 31 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 32 H 0.08 1.12 7.98 -51.92 -0.41 0.71 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 35 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 36 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.13 1.20 8.05 -52.49 -0.42 0.78 16 38 H 0.09 1.65 7.02 -51.93 -0.36 1.28 16 39 H 0.07 0.90 4.11 -51.93 -0.21 0.69 16 40 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 41 H 0.07 1.08 7.95 -51.93 -0.41 0.67 16 42 H 0.08 1.28 7.49 -51.93 -0.39 0.89 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.38 9.36 6.13 -40.82 -0.25 9.11 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -30.54 392.76 -9.70 -40.24 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.27 Total: 9.08 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -1.91 Total: -5.80 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.00 Total: -53.65 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.54 -9.70 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.351 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds