Wall clock time and date at job start Tue Mar 31 2020 20:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46353 * 2 1 4 4 C 1.52995 * 109.46841 * 240.00412 * 2 1 3 5 5 C 1.50697 * 109.47543 * 65.00095 * 4 2 1 6 6 C 1.38258 * 119.99752 * 89.99389 * 5 4 2 7 7 C 1.38221 * 120.02585 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.01515 * 0.02562 * 7 6 5 9 9 C 1.38328 * 119.98768 * 0.02562 * 8 7 6 10 10 Cl 1.73601 * 120.01522 * 179.97438 * 9 8 7 11 11 C 1.38196 * 119.98753 * 269.72572 * 5 4 2 12 12 C 1.50699 * 109.47210 * 120.00034 * 2 1 3 13 13 O 1.21283 * 119.99943 * 114.43983 * 12 2 1 14 14 N 1.34770 * 119.99982 * 294.43820 * 12 2 1 15 15 C 1.46506 * 120.00418 * 355.12697 * 14 12 2 16 16 C 1.46504 * 119.99996 * 175.12798 * 14 12 2 17 17 C 1.52996 * 109.47573 * 89.99861 * 16 14 12 18 18 H 1.08996 * 109.47321 * 295.00616 * 17 16 14 19 19 C 1.52998 * 109.47456 * 174.99917 * 17 16 14 20 20 N 1.46505 * 109.47014 * 54.99959 * 17 16 14 21 21 C 1.36929 * 120.00234 * 204.99985 * 20 17 16 22 22 H 1.08001 * 119.99950 * 0.02562 * 21 20 17 23 23 C 1.38813 * 120.00270 * 179.97438 * 21 20 17 24 24 N 1.31622 * 119.99703 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00434 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47001 * 60.00147 * 25 23 21 27 27 H 1.48495 * 109.47469 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46882 * 300.00266 * 25 23 21 29 29 H 1.09006 * 109.47190 * 290.29110 * 1 2 3 30 30 H 1.09000 * 109.47389 * 50.29254 * 1 2 3 31 31 H 1.08998 * 109.47085 * 170.29333 * 1 2 3 32 32 H 1.09007 * 109.46771 * 184.99701 * 4 2 1 33 33 H 1.08997 * 109.47146 * 304.99559 * 4 2 1 34 34 H 1.07997 * 119.98652 * 0.02755 * 6 5 4 35 35 H 1.08000 * 119.99368 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.00655 * 179.97438 * 8 7 6 37 37 H 1.07997 * 120.00912 * 0.02562 * 11 5 4 38 38 H 1.08997 * 109.46847 * 264.12342 * 15 14 12 39 39 H 1.09002 * 109.46718 * 24.12482 * 15 14 12 40 40 H 1.09003 * 109.47230 * 144.12136 * 15 14 12 41 41 H 1.09002 * 109.47329 * 210.00022 * 16 14 12 42 42 H 1.08999 * 109.46662 * 329.99904 * 16 14 12 43 43 H 1.08999 * 109.47244 * 300.00140 * 19 17 16 44 44 H 1.09003 * 109.46787 * 60.00560 * 19 17 16 45 45 H 1.09000 * 109.47083 * 179.97438 * 19 17 16 46 46 H 0.97002 * 119.99800 * 25.00243 * 20 17 16 47 47 H 0.97003 * 119.99833 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6413 0.0572 -2.4766 6 6 2.4816 1.0333 -2.9792 7 6 2.1163 1.7479 -4.1045 8 6 0.9103 1.4873 -4.7279 9 6 0.0687 0.5116 -4.2249 10 17 -1.4463 0.1842 -5.0067 11 6 0.4384 -0.2088 -3.1027 12 6 2.0324 -0.7104 1.2304 13 8 2.6443 -1.7520 1.1220 14 7 1.8018 -0.1883 2.4513 15 6 1.1574 1.1213 2.5783 16 6 2.1954 -0.9304 3.6516 17 6 3.6254 -0.5499 4.0405 18 1 4.3132 -0.8768 3.2608 19 6 3.9924 -1.2284 5.3618 20 7 3.7188 0.9040 4.1957 21 6 4.9236 1.5339 4.0332 22 1 5.8051 0.9591 3.7902 23 6 5.0120 2.9114 4.1797 24 7 3.9377 3.6120 4.4754 25 14 6.6556 3.7709 3.9573 26 1 7.1618 3.5232 2.5834 27 1 6.4829 5.2310 4.1659 28 1 7.6287 3.2418 4.9464 29 1 -0.3634 0.3564 0.9639 30 1 -0.3634 0.6565 -0.7906 31 1 -0.3633 -1.0129 -0.1733 32 1 3.1263 -0.7993 -1.2056 33 1 1.6054 -1.7197 -1.2952 34 1 3.4237 1.2375 -2.4923 35 1 2.7732 2.5100 -4.4970 36 1 0.6248 2.0461 -5.6069 37 1 -0.2161 -0.9741 -2.7123 38 1 1.9199 1.8916 2.6940 39 1 0.5683 1.3245 1.6840 40 1 0.5047 1.1220 3.4513 41 1 1.5186 -0.6837 4.4696 42 1 2.1464 -2.0004 3.4496 43 1 3.3045 -0.9013 6.1415 44 1 3.9230 -2.3100 5.2462 45 1 5.0113 -0.9576 5.6385 46 1 2.9270 1.4203 4.4136 47 1 3.9995 4.5746 4.5781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734360777.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:04 Heat of formation + Delta-G solvation = -27.098428 kcal Electronic energy + Delta-G solvation = -27370.884485 eV Core-core repulsion = 23578.934699 eV Total energy + Delta-G solvation = -3791.949786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35378 -40.26665 -37.98996 -37.46826 -36.11323 -35.62651 -33.91693 -31.92668 -31.69174 -30.61592 -28.29376 -27.61712 -27.16384 -25.71116 -24.09388 -23.55023 -22.20641 -21.47912 -19.87703 -19.26163 -18.26139 -17.60161 -17.23651 -16.73431 -16.69872 -16.31278 -16.27979 -15.61146 -15.54538 -15.12750 -14.82442 -14.55125 -14.42219 -14.07242 -13.93184 -13.71649 -13.57631 -13.56723 -13.27141 -13.07820 -12.97790 -12.78369 -12.69543 -12.51037 -12.46694 -12.35160 -12.29793 -12.21901 -11.97320 -11.88776 -11.85346 -11.71739 -11.60915 -10.97562 -10.61505 -9.83838 -9.62109 -9.51711 -8.91305 -7.90743 -5.15857 0.18529 0.30037 1.16022 1.46845 1.47471 1.53726 1.69678 2.16747 2.57476 2.66262 3.41716 3.45399 3.80508 3.84660 3.90324 3.99054 4.03493 4.14764 4.19760 4.29320 4.33253 4.38231 4.42460 4.45361 4.60759 4.66166 4.68787 4.73060 4.82522 4.86492 4.87348 4.90343 5.01958 5.05234 5.13922 5.16007 5.25730 5.27219 5.33962 5.39678 5.43029 5.53470 5.59737 5.72092 5.85077 6.31749 6.52492 7.25066 7.39579 8.13071 8.42179 9.31363 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012976 B = 0.002856 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.341504 B = 9801.997466 C =11055.607552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.094 0.906 4 C -0.053 4.053 5 C -0.067 4.067 6 C -0.122 4.122 7 C -0.104 4.104 8 C -0.118 4.118 9 C -0.042 4.042 10 Cl -0.073 7.073 11 C -0.108 4.108 12 C 0.512 3.488 13 O -0.586 6.586 14 N -0.596 5.596 15 C 0.068 3.932 16 C 0.116 3.884 17 C 0.152 3.848 18 H 0.020 0.980 19 C -0.153 4.153 20 N -0.723 5.723 21 C -0.234 4.234 22 H 0.058 0.942 23 C -0.064 4.064 24 N -0.958 5.958 25 Si 0.959 3.041 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.285 1.285 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.044 0.956 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.034 0.966 46 H 0.379 0.621 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.333 -5.863 -16.133 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.118 4.118 3 H 0.112 0.888 4 C -0.091 4.091 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.122 4.122 8 C -0.137 4.137 9 C -0.069 4.069 10 Cl -0.044 7.044 11 C -0.127 4.127 12 C 0.302 3.698 13 O -0.467 6.467 14 N -0.325 5.325 15 C -0.075 4.075 16 C -0.007 4.007 17 C 0.043 3.957 18 H 0.038 0.962 19 C -0.213 4.213 20 N -0.365 5.365 21 C -0.366 4.366 22 H 0.076 0.924 23 C -0.257 4.257 24 N -0.609 5.609 25 Si 0.789 3.211 26 H -0.211 1.211 27 H -0.218 1.218 28 H -0.212 1.212 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.213 0.787 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.000 -6.393 -16.274 21.206 hybrid contribution 0.985 0.849 0.287 1.331 sum -11.015 -5.544 -15.987 20.190 Atomic orbital electron populations 1.22015 0.90819 1.03524 1.03883 1.21212 0.99228 1.00317 0.91064 0.88753 1.20301 1.01229 0.98119 0.89479 1.19740 0.94121 0.96725 0.96189 1.21414 1.00176 0.95659 0.96797 1.21370 0.96230 0.99584 0.94987 1.21296 0.93919 0.97256 1.01184 1.21034 0.89316 0.99944 0.96587 1.98369 1.30906 1.94937 1.80180 1.21041 0.96738 1.00308 0.94572 1.21061 0.78532 0.84864 0.85368 1.90624 1.42746 1.26287 1.87005 1.47673 1.59103 1.20251 1.05521 1.22234 0.97676 0.83249 1.04292 1.21761 0.95339 0.96681 0.86941 1.20765 0.95450 0.84515 0.94982 0.96169 1.22221 1.00803 0.99815 0.98463 1.42437 1.07953 1.01717 1.84366 1.19369 0.88532 0.90378 1.38332 0.92433 1.25272 0.99791 0.96872 1.03719 1.69742 1.28396 1.05871 1.56858 0.85433 0.80523 0.77402 0.77706 1.21133 1.21818 1.21199 0.90427 0.90205 0.91423 0.91686 0.90086 0.85309 0.82983 0.83380 0.84168 0.93691 0.87904 0.90151 0.89007 0.89735 0.92656 0.91518 0.94692 0.78749 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 7.95 71.98 0.57 -2.17 16 2 C -0.10 -2.43 1.88 -11.54 -0.02 -2.46 16 3 H 0.09 2.47 7.73 -2.39 -0.02 2.46 16 4 C -0.05 -1.28 4.14 29.85 0.12 -1.16 16 5 C -0.07 -1.38 4.72 -19.87 -0.09 -1.48 16 6 C -0.12 -2.42 9.70 22.27 0.22 -2.20 16 7 C -0.10 -1.70 10.05 22.27 0.22 -1.48 16 8 C -0.12 -1.90 9.83 22.29 0.22 -1.68 16 9 C -0.04 -0.76 6.32 22.33 0.14 -0.62 16 10 Cl -0.07 -1.22 28.96 -2.72 -0.08 -1.30 16 11 C -0.11 -2.01 8.03 22.29 0.18 -1.83 16 12 C 0.51 16.91 6.98 87.66 0.61 17.52 16 13 O -0.59 -23.11 15.61 -3.04 -0.05 -23.15 16 14 N -0.60 -19.25 2.73 -846.75 -2.31 -21.56 16 15 C 0.07 1.97 8.69 127.77 1.11 3.08 16 16 C 0.12 3.83 5.04 86.38 0.44 4.27 16 17 C 0.15 6.18 3.20 44.99 0.14 6.33 16 18 H 0.02 0.94 8.08 -2.39 -0.02 0.92 16 19 C -0.15 -5.45 9.49 71.98 0.68 -4.76 16 20 N -0.72 -34.89 4.34 -322.95 -1.40 -36.29 16 21 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 22 H 0.06 3.20 7.83 -2.91 -0.02 3.18 16 23 C -0.06 -3.54 5.50 84.86 0.47 -3.08 16 24 N -0.96 -55.25 13.06 21.65 0.28 -54.97 16 25 Si 0.96 45.74 29.55 68.60 2.03 47.77 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 29 H 0.08 1.39 5.40 -2.38 -0.01 1.38 16 30 H 0.08 1.33 6.94 -2.39 -0.02 1.31 16 31 H 0.07 1.20 8.10 -2.39 -0.02 1.18 16 32 H 0.06 1.79 7.98 -2.38 -0.02 1.77 16 33 H 0.08 1.92 8.06 -2.39 -0.02 1.90 16 34 H 0.13 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.14 2.31 8.05 -2.91 -0.02 2.29 16 38 H 0.04 1.72 7.02 -2.39 -0.02 1.71 16 39 H 0.10 2.35 4.11 -2.39 -0.01 2.34 16 40 H 0.08 2.05 7.98 -2.39 -0.02 2.04 16 41 H 0.09 2.64 7.95 -2.39 -0.02 2.62 16 42 H 0.08 2.69 7.49 -2.39 -0.02 2.67 16 43 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.38 18.73 6.13 -92.71 -0.57 18.16 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -65.90 392.76 4.72 -61.18 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.40 Total: 32.05 kcal Atomic # 6 Polarization: -9.56 SS G_CDS: 5.84 Total: -3.72 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -3.43 Total: -112.82 kcal Atomic # 8 Polarization: -23.11 SS G_CDS: -0.05 Total: -23.15 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -65.90 4.72 -61.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360777.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.087 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds