Wall clock time and date at job start Tue Mar 31 2020 20:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47402 * 2 1 4 4 C 1.53005 * 109.47331 * 239.99871 * 2 1 3 5 5 N 1.46502 * 109.47167 * 185.00011 * 4 2 1 6 6 C 1.46507 * 119.99856 * 270.00068 * 5 4 2 7 7 C 1.34776 * 120.00044 * 89.99946 * 5 4 2 8 8 O 1.21281 * 120.00166 * 5.12730 * 7 5 4 9 9 C 1.50703 * 119.99970 * 185.12724 * 7 5 4 10 10 H 1.08999 * 109.46754 * 305.35996 * 9 7 5 11 11 C 1.52999 * 109.47111 * 65.35552 * 9 7 5 12 12 C 1.53000 * 109.47032 * 185.35934 * 9 7 5 13 13 C 1.50703 * 109.46857 * 174.99829 * 12 9 7 14 14 C 1.38262 * 119.98911 * 89.99992 * 13 12 9 15 15 C 1.38226 * 120.02006 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.01959 * 0.25665 * 15 14 13 17 17 C 1.38333 * 119.98123 * 359.50972 * 16 15 14 18 18 Cl 1.73600 * 120.01492 * 180.25478 * 17 16 15 19 19 C 1.38192 * 119.99250 * 270.02052 * 13 12 9 20 20 N 1.46499 * 109.47082 * 119.99896 * 2 1 3 21 21 C 1.36942 * 119.99995 * 274.99756 * 20 2 1 22 22 H 1.08000 * 120.00058 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99856 * 180.02562 * 21 20 2 24 24 N 1.31618 * 119.99584 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00183 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46974 * 90.00012 * 25 23 21 27 27 H 1.48497 * 109.47129 * 209.99925 * 25 23 21 28 28 H 1.48497 * 109.47034 * 330.00438 * 25 23 21 29 29 H 1.09006 * 109.47142 * 60.00548 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47645 * 300.00057 * 1 2 3 32 32 H 1.08994 * 109.46667 * 65.00224 * 4 2 1 33 33 H 1.08995 * 109.47290 * 304.99681 * 4 2 1 34 34 H 1.08995 * 109.46837 * 275.85181 * 6 5 4 35 35 H 1.08999 * 109.46958 * 35.85494 * 6 5 4 36 36 H 1.09000 * 109.46898 * 155.85095 * 6 5 4 37 37 H 1.09000 * 109.46698 * 70.12089 * 11 9 7 38 38 H 1.09004 * 109.46900 * 190.11381 * 11 9 7 39 39 H 1.08997 * 109.47257 * 310.12021 * 11 9 7 40 40 H 1.08996 * 109.47239 * 54.99903 * 12 9 7 41 41 H 1.08996 * 109.47194 * 294.99804 * 12 9 7 42 42 H 1.07996 * 119.99222 * 0.02562 * 14 13 12 43 43 H 1.08008 * 119.98862 * 179.97438 * 15 14 13 44 44 H 1.07988 * 120.01055 * 179.74741 * 16 15 14 45 45 H 1.07994 * 120.00693 * 359.97438 * 19 13 12 46 46 H 0.97005 * 120.00412 * 95.00688 * 20 2 1 47 47 H 0.96999 * 119.99536 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7613 7 6 4.0758 -1.8987 -0.6115 8 8 3.3891 -2.8195 -0.2225 9 6 5.5728 -1.9534 -0.4474 10 1 6.0502 -1.8007 -1.4153 11 6 6.0202 -0.8562 0.5206 12 6 5.9752 -3.3203 0.1098 13 6 7.4781 -3.4203 0.1586 14 6 8.1612 -3.0156 1.2905 15 6 9.5397 -3.1075 1.3362 16 6 10.2364 -3.5990 0.2482 17 6 9.5531 -4.0085 -0.8827 18 17 10.4267 -4.6322 -2.2471 19 6 8.1731 -3.9159 -0.9281 20 7 2.0182 -0.6906 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8919 1.0404 2.4244 23 6 2.6123 -0.6617 3.5091 24 7 2.7375 -0.0051 4.6429 25 14 3.0579 -2.4738 3.4249 26 1 4.4906 -2.6148 3.0610 27 1 2.8188 -3.1043 4.7479 28 1 2.2184 -3.1428 2.3987 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2951 34 1 4.4563 0.0643 -2.8310 35 1 3.8558 1.1999 -1.5988 36 1 5.3116 0.2271 -1.2784 37 1 5.6908 -1.1052 1.5293 38 1 7.1072 -0.7769 0.5026 39 1 5.5814 0.0950 0.2195 40 1 5.5795 -4.1059 -0.5339 41 1 5.5705 -3.4363 1.1152 42 1 7.6176 -2.6284 2.1396 43 1 10.0728 -2.7908 2.2205 44 1 11.3136 -3.6669 0.2825 45 1 7.6393 -4.2320 -1.8121 46 1 2.2491 -1.6318 1.1527 47 1 3.0609 -0.4624 5.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734360778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:09 Heat of formation + Delta-G solvation = -7.044256 kcal Electronic energy + Delta-G solvation = -28203.118037 eV Core-core repulsion = 24412.037865 eV Total energy + Delta-G solvation = -3791.080172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24837 -39.35963 -36.79086 -36.28925 -34.99120 -34.35570 -32.04181 -31.16568 -30.68175 -29.26687 -27.28221 -26.61339 -25.90200 -23.52019 -23.05532 -22.61010 -21.14986 -19.89447 -18.80244 -17.57964 -17.30314 -16.64011 -15.95848 -15.75537 -15.55466 -15.19242 -14.75759 -14.38421 -14.11896 -13.91467 -13.66801 -13.39871 -13.25004 -12.81345 -12.75894 -12.48412 -12.36176 -12.27845 -12.16943 -11.99818 -11.65634 -11.57156 -11.55002 -11.47602 -11.33198 -11.11029 -10.95139 -10.83473 -10.63768 -10.60061 -10.45764 -9.93309 -9.50924 -9.35297 -9.04082 -8.85974 -8.78992 -8.24741 -7.16000 -5.70695 -3.03584 0.99119 1.08304 1.91776 2.95668 3.29406 3.43421 3.49878 3.53274 3.66352 4.46173 4.63547 4.68909 4.77917 4.88901 5.02610 5.06438 5.15461 5.22095 5.24880 5.26402 5.41068 5.44334 5.46815 5.56868 5.67570 5.68778 5.73242 5.84947 5.85393 5.92843 5.97155 6.01272 6.02797 6.17406 6.18787 6.23950 6.27472 6.44819 6.45782 6.55173 6.64551 6.72438 6.82025 7.05252 7.69003 8.08457 8.48097 8.54970 9.33173 10.06047 10.28327 11.47494 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003591 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.222731 B = 7794.645587 C = 9021.754674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.160 3.840 3 H 0.052 0.948 4 C 0.105 3.895 5 N -0.604 5.604 6 C 0.067 3.933 7 C 0.527 3.473 8 O -0.537 6.537 9 C -0.100 4.100 10 H 0.091 0.909 11 C -0.154 4.154 12 C -0.069 4.069 13 C -0.058 4.058 14 C -0.107 4.107 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.034 4.034 18 Cl -0.078 7.078 19 C -0.109 4.109 20 N -0.746 5.746 21 C -0.235 4.235 22 H 0.086 0.914 23 C 0.005 3.995 24 N -0.937 5.937 25 Si 0.874 3.126 26 H -0.283 1.283 27 H -0.297 1.297 28 H -0.268 1.268 29 H 0.038 0.962 30 H 0.046 0.954 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.132 0.868 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.374 0.626 47 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.398 -3.758 -15.375 20.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 H 0.070 0.930 4 C -0.018 4.018 5 N -0.336 5.336 6 C -0.076 4.076 7 C 0.315 3.685 8 O -0.414 6.414 9 C -0.121 4.121 10 H 0.109 0.891 11 C -0.211 4.211 12 C -0.106 4.106 13 C -0.059 4.059 14 C -0.125 4.125 15 C -0.123 4.123 16 C -0.137 4.137 17 C -0.060 4.060 18 Cl -0.049 7.049 19 C -0.128 4.128 20 N -0.393 5.393 21 C -0.366 4.366 22 H 0.104 0.896 23 C -0.190 4.190 24 N -0.586 5.586 25 Si 0.705 3.295 26 H -0.210 1.210 27 H -0.224 1.224 28 H -0.193 1.193 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.211 0.789 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.117 -4.139 -15.134 20.451 hybrid contribution 0.373 -1.159 0.021 1.218 sum 13.490 -5.298 -15.113 20.940 Atomic orbital electron populations 1.22375 0.98596 1.01028 1.00479 1.20590 0.92145 0.95815 0.86493 0.92986 1.21900 0.79259 1.02208 0.98447 1.47548 1.06782 1.20951 1.58362 1.22051 0.96589 0.91253 0.97690 1.20385 0.89996 0.81636 0.76466 1.90664 1.64891 1.37078 1.48791 1.21209 0.92846 0.97055 1.01027 0.89100 1.22050 1.01141 0.97715 1.00201 1.20529 0.89640 0.96409 1.04061 1.19884 0.96001 0.96865 0.93127 1.21358 0.94307 0.98528 0.98298 1.21141 0.94207 0.98865 0.98076 1.21016 1.00309 1.00134 0.92269 1.20886 0.92409 1.02778 0.89939 1.98363 1.76495 1.85921 1.44147 1.20952 0.91815 1.00724 0.99297 1.42988 1.79365 1.10344 1.06559 1.19056 1.36222 0.95298 0.85976 0.89616 1.24585 1.01720 0.97156 0.95520 1.69712 1.53193 1.35465 1.00196 0.86688 0.79044 0.87342 0.76411 1.20985 1.22448 1.19329 0.94266 0.93475 0.92165 0.90746 0.90178 0.93162 0.91128 0.89758 0.90892 0.91840 0.90716 0.89984 0.89436 0.84986 0.85010 0.85198 0.85038 0.78941 0.93318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.15 0.35 -2.52 16 2 C 0.16 3.06 3.20 -67.93 -0.22 2.84 16 3 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 4 C 0.11 1.65 5.18 -4.04 -0.02 1.63 16 5 N -0.60 -9.23 2.77 -181.57 -0.50 -9.73 16 6 C 0.07 0.75 9.72 59.85 0.58 1.33 16 7 C 0.53 9.11 6.14 -10.98 -0.07 9.04 16 8 O -0.54 -11.32 13.60 5.56 0.08 -11.24 16 9 C -0.10 -1.40 1.88 -91.77 -0.17 -1.58 16 10 H 0.09 1.03 7.73 -51.93 -0.40 0.63 16 11 C -0.15 -2.23 7.91 37.16 0.29 -1.94 16 12 C -0.07 -0.99 4.14 -27.88 -0.12 -1.10 16 13 C -0.06 -0.72 4.73 -104.63 -0.49 -1.21 16 14 C -0.11 -1.27 8.24 -39.58 -0.33 -1.60 16 15 C -0.10 -1.06 10.04 -39.59 -0.40 -1.46 16 16 C -0.12 -1.17 9.83 -39.55 -0.39 -1.56 16 17 C -0.03 -0.36 6.32 -39.49 -0.25 -0.61 16 18 Cl -0.08 -0.77 28.96 -51.86 -1.50 -2.27 16 19 C -0.11 -1.22 9.49 -39.55 -0.38 -1.59 16 20 N -0.75 -18.04 4.33 -53.42 -0.23 -18.27 16 21 C -0.24 -6.65 10.41 -15.06 -0.16 -6.81 16 22 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.94 -29.58 13.97 55.49 0.78 -28.80 16 25 Si 0.87 23.34 27.74 -169.99 -4.71 18.62 16 26 H -0.28 -7.15 7.00 56.52 0.40 -6.75 16 27 H -0.30 -8.08 7.11 56.52 0.40 -7.68 16 28 H -0.27 -7.29 6.52 56.52 0.37 -6.92 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.08 1.38 7.36 -51.93 -0.38 1.00 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 36 H 0.08 0.89 4.12 -51.93 -0.21 0.67 16 37 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 38 H 0.06 0.77 6.96 -51.93 -0.36 0.41 16 39 H 0.07 1.07 5.41 -51.93 -0.28 0.79 16 40 H 0.08 1.14 7.98 -51.93 -0.41 0.73 16 41 H 0.09 1.50 7.95 -51.93 -0.41 1.09 16 42 H 0.13 1.65 8.04 -52.49 -0.42 1.23 16 43 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.37 9.43 3.11 -40.82 -0.13 9.30 16 47 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 388.33 15.07 5.85 5.85 Total: -1.00 -33.71 388.33 -9.35 -43.06 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -7.25 Total: 9.83 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -1.85 Total: -7.07 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.04 Total: -56.80 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.71 Total: 18.62 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.71 -9.35 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.020 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds