Wall clock time and date at job start Tue Mar 31 2020 20:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.47402 * 2 1 4 4 C 1.53005 * 109.47331 * 239.99871 * 2 1 3 5 5 N 1.46502 * 109.47167 * 185.00011 * 4 2 1 6 6 C 1.46507 * 119.99856 * 270.00068 * 5 4 2 7 7 C 1.34776 * 120.00044 * 89.99946 * 5 4 2 8 8 O 1.21281 * 120.00166 * 5.12730 * 7 5 4 9 9 C 1.50703 * 119.99970 * 185.12724 * 7 5 4 10 10 H 1.08999 * 109.46754 * 305.35996 * 9 7 5 11 11 C 1.52999 * 109.47111 * 65.35552 * 9 7 5 12 12 C 1.53000 * 109.47032 * 185.35934 * 9 7 5 13 13 C 1.50703 * 109.46857 * 174.99829 * 12 9 7 14 14 C 1.38262 * 119.98911 * 89.99992 * 13 12 9 15 15 C 1.38226 * 120.02006 * 179.97438 * 14 13 12 16 16 C 1.38232 * 120.01959 * 0.25665 * 15 14 13 17 17 C 1.38333 * 119.98123 * 359.50972 * 16 15 14 18 18 Cl 1.73600 * 120.01492 * 180.25478 * 17 16 15 19 19 C 1.38192 * 119.99250 * 270.02052 * 13 12 9 20 20 N 1.46499 * 109.47082 * 119.99896 * 2 1 3 21 21 C 1.36942 * 119.99995 * 274.99756 * 20 2 1 22 22 H 1.08000 * 120.00058 * 0.02562 * 21 20 2 23 23 C 1.38815 * 119.99856 * 180.02562 * 21 20 2 24 24 N 1.31618 * 119.99584 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00183 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.46974 * 90.00012 * 25 23 21 27 27 H 1.48497 * 109.47129 * 209.99925 * 25 23 21 28 28 H 1.48497 * 109.47034 * 330.00438 * 25 23 21 29 29 H 1.09006 * 109.47142 * 60.00548 * 1 2 3 30 30 H 1.09004 * 109.46978 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47645 * 300.00057 * 1 2 3 32 32 H 1.08994 * 109.46667 * 65.00224 * 4 2 1 33 33 H 1.08995 * 109.47290 * 304.99681 * 4 2 1 34 34 H 1.08995 * 109.46837 * 275.85181 * 6 5 4 35 35 H 1.08999 * 109.46958 * 35.85494 * 6 5 4 36 36 H 1.09000 * 109.46898 * 155.85095 * 6 5 4 37 37 H 1.09000 * 109.46698 * 70.12089 * 11 9 7 38 38 H 1.09004 * 109.46900 * 190.11381 * 11 9 7 39 39 H 1.08997 * 109.47257 * 310.12021 * 11 9 7 40 40 H 1.08996 * 109.47239 * 54.99903 * 12 9 7 41 41 H 1.08996 * 109.47194 * 294.99804 * 12 9 7 42 42 H 1.07996 * 119.99222 * 0.02562 * 14 13 12 43 43 H 1.08008 * 119.98862 * 179.97438 * 15 14 13 44 44 H 1.07988 * 120.01055 * 179.74741 * 16 15 14 45 45 H 1.07994 * 120.00693 * 359.97438 * 19 13 12 46 46 H 0.97005 * 120.00412 * 95.00688 * 20 2 1 47 47 H 0.96999 * 119.99536 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2341 -1.7613 7 6 4.0758 -1.8987 -0.6115 8 8 3.3891 -2.8195 -0.2225 9 6 5.5728 -1.9534 -0.4474 10 1 6.0502 -1.8007 -1.4153 11 6 6.0202 -0.8562 0.5206 12 6 5.9752 -3.3203 0.1098 13 6 7.4781 -3.4203 0.1586 14 6 8.1612 -3.0156 1.2905 15 6 9.5397 -3.1075 1.3362 16 6 10.2364 -3.5990 0.2482 17 6 9.5531 -4.0085 -0.8827 18 17 10.4267 -4.6322 -2.2471 19 6 8.1731 -3.9159 -0.9281 20 7 2.0182 -0.6906 1.1962 21 6 2.1491 -0.0074 2.3758 22 1 1.8919 1.0404 2.4244 23 6 2.6123 -0.6617 3.5091 24 7 2.7375 -0.0051 4.6429 25 14 3.0579 -2.4738 3.4249 26 1 4.4906 -2.6148 3.0610 27 1 2.8188 -3.1043 4.7479 28 1 2.2184 -3.1428 2.3987 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.7517 -0.1583 -2.1369 33 1 1.6055 -1.7198 -1.2951 34 1 4.4563 0.0643 -2.8310 35 1 3.8558 1.1999 -1.5988 36 1 5.3116 0.2271 -1.2784 37 1 5.6908 -1.1052 1.5293 38 1 7.1072 -0.7769 0.5026 39 1 5.5814 0.0950 0.2195 40 1 5.5795 -4.1059 -0.5339 41 1 5.5705 -3.4363 1.1152 42 1 7.6176 -2.6284 2.1396 43 1 10.0728 -2.7908 2.2205 44 1 11.3136 -3.6669 0.2825 45 1 7.6393 -4.2320 -1.8121 46 1 2.2491 -1.6318 1.1527 47 1 3.0609 -0.4624 5.4349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734360778.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:08 Heat of formation + Delta-G solvation = -26.304407 kcal Electronic energy + Delta-G solvation = -28203.953220 eV Core-core repulsion = 24412.037865 eV Total energy + Delta-G solvation = -3791.915355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42900 -40.32647 -37.91388 -37.48668 -36.26597 -35.74005 -33.99210 -32.18027 -31.63393 -31.07589 -28.37225 -27.70808 -27.10907 -25.43774 -24.22583 -23.52480 -22.21965 -21.43468 -20.19922 -19.50103 -18.36319 -17.62453 -17.26296 -16.76110 -16.66903 -16.54054 -16.30271 -15.81683 -15.46791 -14.99172 -14.75398 -14.59882 -14.48054 -14.45816 -14.01053 -13.87996 -13.69443 -13.55336 -13.34594 -13.20510 -13.08175 -12.96672 -12.78627 -12.49420 -12.47903 -12.36867 -12.30707 -12.18963 -12.02352 -11.91166 -11.79175 -11.78454 -11.70611 -11.00166 -10.64691 -9.89069 -9.65823 -9.51503 -9.23259 -8.03691 -5.30570 0.13712 0.25667 1.12082 1.27946 1.30946 1.46507 1.67997 2.17373 2.44374 2.61671 3.29018 3.42550 3.68924 3.72593 3.80392 3.96942 3.97463 4.12563 4.13096 4.27149 4.28971 4.34165 4.37902 4.45678 4.56095 4.60367 4.65677 4.71544 4.75491 4.78945 4.87137 4.90186 4.94100 4.97339 5.01440 5.08598 5.21431 5.24937 5.33151 5.35499 5.45681 5.56295 5.69323 5.79853 5.81166 6.22594 6.49069 7.11904 7.27395 7.94636 8.11724 9.18246 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013925 B = 0.003591 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.222731 B = 7794.645587 C = 9021.754674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.149 3.851 3 H 0.053 0.947 4 C 0.111 3.889 5 N -0.605 5.605 6 C 0.060 3.940 7 C 0.514 3.486 8 O -0.584 6.584 9 C -0.093 4.093 10 H 0.127 0.873 11 C -0.145 4.145 12 C -0.062 4.062 13 C -0.066 4.066 14 C -0.122 4.122 15 C -0.101 4.101 16 C -0.114 4.114 17 C -0.039 4.039 18 Cl -0.069 7.069 19 C -0.109 4.109 20 N -0.753 5.753 21 C -0.208 4.208 22 H 0.063 0.937 23 C -0.050 4.050 24 N -0.979 5.979 25 Si 0.928 3.072 26 H -0.271 1.271 27 H -0.304 1.304 28 H -0.277 1.277 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.122 0.878 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.117 0.883 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.142 0.858 46 H 0.370 0.630 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.156 -3.538 -18.472 24.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.040 3.960 3 H 0.071 0.929 4 C -0.012 4.012 5 N -0.336 5.336 6 C -0.082 4.082 7 C 0.303 3.697 8 O -0.465 6.465 9 C -0.113 4.113 10 H 0.145 0.855 11 C -0.202 4.202 12 C -0.100 4.100 13 C -0.067 4.067 14 C -0.141 4.141 15 C -0.119 4.119 16 C -0.132 4.132 17 C -0.065 4.065 18 Cl -0.041 7.041 19 C -0.128 4.128 20 N -0.399 5.399 21 C -0.340 4.340 22 H 0.081 0.919 23 C -0.241 4.241 24 N -0.631 5.631 25 Si 0.759 3.241 26 H -0.197 1.197 27 H -0.231 1.231 28 H -0.203 1.203 29 H 0.102 0.898 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.140 0.860 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.047 0.953 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.135 0.865 43 H 0.171 0.829 44 H 0.171 0.829 45 H 0.160 0.840 46 H 0.206 0.794 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.878 -3.883 -18.306 23.907 hybrid contribution -0.193 -1.146 0.873 1.454 sum 14.686 -5.029 -17.433 23.342 Atomic orbital electron populations 1.22240 0.97130 1.00892 1.01380 1.20955 0.93162 0.95805 0.86047 0.92878 1.21844 0.79655 1.01536 0.98197 1.47732 1.07054 1.21262 1.57575 1.22336 0.96131 0.90217 0.99501 1.21012 0.91199 0.81572 0.75900 1.90633 1.66062 1.38951 1.50812 1.21223 0.91026 0.96605 1.02496 0.85477 1.21969 1.02640 0.97870 0.97730 1.20371 0.91197 0.96750 1.01712 1.19668 0.94649 0.98349 0.94005 1.21359 0.95322 0.99459 0.97910 1.21359 0.93359 0.98138 0.99020 1.21300 1.01469 0.98863 0.91579 1.20999 0.92350 1.02658 0.90511 1.98369 1.76177 1.85785 1.43728 1.20996 0.92216 1.00404 0.99181 1.43128 1.79582 1.10235 1.06959 1.19055 1.33286 0.94314 0.87305 0.91904 1.25083 1.03335 1.00128 0.95593 1.69829 1.55667 1.36771 1.00867 0.85826 0.79325 0.83586 0.75333 1.19724 1.23145 1.20350 0.89799 0.94122 0.94797 0.85993 0.91775 0.89769 0.90381 0.89279 0.95279 0.89424 0.90417 0.90048 0.93285 0.86473 0.82863 0.82948 0.84049 0.79387 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.24 9.49 71.98 0.68 -4.56 16 2 C 0.15 5.49 3.20 44.99 0.14 5.63 16 3 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 4 C 0.11 3.22 5.18 86.38 0.45 3.67 16 5 N -0.61 -17.16 2.77 -846.74 -2.35 -19.51 16 6 C 0.06 1.11 9.72 127.77 1.24 2.35 16 7 C 0.51 17.37 6.14 87.66 0.54 17.91 16 8 O -0.58 -24.90 13.60 -3.03 -0.04 -24.94 16 9 C -0.09 -2.50 1.88 -11.54 -0.02 -2.52 16 10 H 0.13 2.50 7.73 -2.39 -0.02 2.48 16 11 C -0.15 -4.13 7.91 71.98 0.57 -3.57 16 12 C -0.06 -1.80 4.14 29.85 0.12 -1.68 16 13 C -0.07 -1.58 4.73 -19.87 -0.09 -1.67 16 14 C -0.12 -2.85 8.24 22.27 0.18 -2.67 16 15 C -0.10 -1.83 10.04 22.27 0.22 -1.61 16 16 C -0.11 -1.92 9.83 22.29 0.22 -1.70 16 17 C -0.04 -0.73 6.32 22.33 0.14 -0.59 16 18 Cl -0.07 -1.19 28.96 -2.72 -0.08 -1.27 16 19 C -0.11 -2.23 9.49 22.29 0.21 -2.02 16 20 N -0.75 -36.68 4.33 -322.93 -1.40 -38.08 16 21 C -0.21 -12.04 10.41 84.03 0.87 -11.17 16 22 H 0.06 3.89 8.06 -2.91 -0.02 3.87 16 23 C -0.05 -3.04 5.50 84.86 0.47 -2.58 16 24 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 25 Si 0.93 50.54 27.74 68.60 1.90 52.44 16 26 H -0.27 -14.04 7.00 99.48 0.70 -13.34 16 27 H -0.30 -16.68 7.11 99.48 0.71 -15.97 16 28 H -0.28 -15.38 6.52 99.48 0.65 -14.73 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.12 2.40 8.07 -2.39 -0.02 2.38 16 33 H 0.06 2.11 7.36 -2.39 -0.02 2.09 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.37 8.11 -2.39 -0.02 1.35 16 36 H 0.09 1.59 4.12 -2.39 -0.01 1.58 16 37 H 0.03 1.07 8.09 -2.39 -0.02 1.05 16 38 H 0.09 2.03 6.96 -2.38 -0.02 2.01 16 39 H 0.08 2.13 5.41 -2.39 -0.01 2.12 16 40 H 0.08 2.30 7.98 -2.39 -0.02 2.28 16 41 H 0.05 1.77 7.95 -2.39 -0.02 1.76 16 42 H 0.12 3.04 8.04 -2.91 -0.02 3.01 16 43 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 44 H 0.15 1.87 8.06 -2.92 -0.02 1.85 16 45 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 46 H 0.37 18.92 3.11 -92.70 -0.29 18.63 16 47 H 0.25 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -76.72 388.33 4.90 -71.82 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.61 Total: 29.83 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.95 Total: -6.75 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -3.44 Total: -121.14 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.04 Total: -24.94 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.90 Total: 52.44 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -0.08 Total: -1.27 kcal Total: -76.72 4.90 -71.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360778.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.517 kcal (2) G-P(sol) polarization free energy of solvation -76.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds