Wall clock time and date at job start Tue Mar 31 2020 20:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.53009 * 109.46886 * 119.99404 * 2 1 3 5 5 N 1.46504 * 109.47110 * 175.00152 * 4 2 1 6 6 C 1.46502 * 119.99801 * 270.00347 * 5 4 2 7 7 C 1.34776 * 119.99882 * 90.00254 * 5 4 2 8 8 O 1.21277 * 120.00024 * 4.68164 * 7 5 4 9 9 C 1.50700 * 119.99438 * 184.69010 * 7 5 4 10 10 H 1.09003 * 109.46951 * 306.76571 * 9 7 5 11 11 C 1.52993 * 109.47775 * 66.77069 * 9 7 5 12 12 C 1.53007 * 109.46519 * 186.77482 * 9 7 5 13 13 C 1.50697 * 109.46887 * 174.99653 * 12 9 7 14 14 C 1.38268 * 119.99603 * 89.99877 * 13 12 9 15 15 C 1.38214 * 120.02812 * 180.02562 * 14 13 12 16 16 C 1.38235 * 120.01575 * 0.25421 * 15 14 13 17 17 C 1.38328 * 119.98257 * 359.50991 * 16 15 14 18 18 Cl 1.73604 * 120.01316 * 180.25041 * 17 16 15 19 19 C 1.38197 * 119.99770 * 270.02238 * 13 12 9 20 20 N 1.46494 * 109.47272 * 239.99353 * 2 1 3 21 21 C 1.36938 * 119.99988 * 85.00242 * 20 2 1 22 22 H 1.08000 * 119.99708 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00336 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00237 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47087 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46895 * 120.00394 * 25 23 21 28 28 H 1.48500 * 109.46838 * 240.00329 * 25 23 21 29 29 H 1.08997 * 109.46670 * 60.00263 * 1 2 3 30 30 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47438 * 300.00524 * 1 2 3 32 32 H 1.08997 * 109.46543 * 55.00261 * 4 2 1 33 33 H 1.08997 * 109.47039 * 294.99994 * 4 2 1 34 34 H 1.09005 * 109.46692 * 264.65384 * 6 5 4 35 35 H 1.09001 * 109.47016 * 24.65647 * 6 5 4 36 36 H 1.09001 * 109.47019 * 144.65440 * 6 5 4 37 37 H 1.09007 * 109.46791 * 69.37527 * 11 9 7 38 38 H 1.08995 * 109.47249 * 189.36952 * 11 9 7 39 39 H 1.09001 * 109.47302 * 309.37579 * 11 9 7 40 40 H 1.08999 * 109.47434 * 54.99900 * 12 9 7 41 41 H 1.08998 * 109.47079 * 294.98936 * 12 9 7 42 42 H 1.07996 * 119.98221 * 0.02562 * 14 13 12 43 43 H 1.08003 * 119.99591 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.00967 * 179.74465 * 16 15 14 45 45 H 1.08007 * 120.00198 * 359.97220 * 19 13 12 46 46 H 0.96997 * 120.00314 * 264.99694 * 20 2 1 47 47 H 0.96998 * 120.00371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1908 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7158 8 8 3.7524 1.0718 2.3113 9 6 5.7657 0.0939 1.5627 10 1 6.1317 -0.8698 1.9171 11 6 6.1346 0.2688 0.0883 12 6 6.4040 1.2154 2.3848 13 6 7.9045 1.0859 2.3312 14 6 8.6182 1.7248 1.3341 15 6 9.9943 1.6061 1.2840 16 6 10.6575 0.8441 2.2277 17 6 9.9445 0.2087 3.2283 18 17 10.7771 -0.7430 4.4177 19 6 8.5669 0.3283 3.2783 20 7 2.0183 -0.6907 -1.1960 21 6 2.1492 -0.0077 -2.3757 22 1 1.8927 1.0403 -2.4241 23 6 2.6124 -0.6620 -3.5089 24 7 2.9254 -1.9390 -3.4497 25 14 2.7902 0.2696 -5.1182 26 1 2.3753 1.6818 -4.9212 27 1 4.2071 0.2275 -5.5606 28 1 1.9300 -0.3599 -6.1521 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 4.3687 -2.7305 1.3255 35 1 3.4360 -2.4291 -0.1604 36 1 5.0382 -1.6833 0.0513 37 1 5.9194 1.2916 -0.2212 38 1 7.1966 0.0641 -0.0473 39 1 5.5507 -0.4246 -0.5171 40 1 6.0699 1.1428 3.4198 41 1 6.1078 2.1807 1.9742 42 1 8.1002 2.3168 0.5942 43 1 10.5513 2.1050 0.5047 44 1 11.7324 0.7480 2.1860 45 1 8.0092 -0.1707 4.0572 46 1 2.2491 -1.6318 -1.1524 47 1 3.2488 -2.3964 -4.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734360779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:12 Heat of formation + Delta-G solvation = -10.633945 kcal Electronic energy + Delta-G solvation = -27491.626607 eV Core-core repulsion = 23700.390774 eV Total energy + Delta-G solvation = -3791.235832 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19477 -39.33106 -36.80469 -36.38383 -34.90428 -34.14846 -32.11829 -31.17826 -30.69271 -28.82163 -27.09392 -26.51396 -25.85800 -23.81162 -23.10450 -22.61735 -21.16920 -20.05510 -18.56359 -17.35951 -17.23078 -16.57344 -15.85225 -15.78480 -15.56659 -15.24496 -14.60583 -14.33403 -14.06435 -13.94138 -13.72224 -13.53118 -13.35963 -12.92712 -12.55226 -12.39963 -12.25675 -12.12059 -12.03431 -11.89077 -11.66217 -11.59285 -11.46979 -11.33782 -11.26395 -10.98933 -10.93854 -10.89576 -10.75702 -10.66828 -10.33796 -10.03686 -9.66996 -9.35214 -9.06755 -8.94275 -8.83177 -8.11840 -6.96519 -5.80361 -3.06808 0.95169 1.04688 1.90336 2.98830 3.33304 3.39829 3.47369 3.48285 3.53280 4.45590 4.57241 4.59253 4.78900 4.87411 5.00647 5.03720 5.12746 5.20315 5.38672 5.43348 5.52049 5.53460 5.59142 5.64292 5.67121 5.78191 5.85770 5.90336 5.94459 5.98904 5.99810 6.11585 6.15022 6.17654 6.25743 6.27204 6.35653 6.39848 6.58557 6.61441 6.69758 6.83180 6.87262 7.16286 7.69586 7.81735 8.39430 8.55987 9.50709 10.06991 10.43029 11.42582 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.002888 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.024954 B = 9694.347281 C =10834.138787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.050 0.950 4 C 0.109 3.891 5 N -0.593 5.593 6 C 0.069 3.931 7 C 0.521 3.479 8 O -0.554 6.554 9 C -0.101 4.101 10 H 0.091 0.909 11 C -0.154 4.154 12 C -0.062 4.062 13 C -0.060 4.060 14 C -0.107 4.107 15 C -0.106 4.106 16 C -0.119 4.119 17 C -0.033 4.033 18 Cl -0.077 7.077 19 C -0.109 4.109 20 N -0.719 5.719 21 C -0.228 4.228 22 H 0.068 0.932 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.901 3.099 26 H -0.282 1.282 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.043 0.957 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.381 0.619 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.079 2.115 13.531 18.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.044 3.956 3 H 0.068 0.932 4 C -0.014 4.014 5 N -0.323 5.323 6 C -0.074 4.074 7 C 0.309 3.691 8 O -0.432 6.432 9 C -0.122 4.122 10 H 0.109 0.891 11 C -0.211 4.211 12 C -0.100 4.100 13 C -0.060 4.060 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.137 4.137 17 C -0.059 4.059 18 Cl -0.048 7.048 19 C -0.128 4.128 20 N -0.363 5.363 21 C -0.359 4.359 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.584 5.584 25 Si 0.733 3.267 26 H -0.207 1.207 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.149 0.851 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.216 0.784 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.881 2.619 13.812 19.067 hybrid contribution 0.245 -0.104 -1.051 1.084 sum 13.125 2.515 12.761 18.478 Atomic orbital electron populations 1.22369 0.98870 1.00818 1.00246 1.20652 0.91918 0.96202 0.86796 0.93191 1.21843 0.79114 1.01102 0.99389 1.47554 1.06560 1.21282 1.56911 1.22162 1.00667 0.87158 0.97369 1.20425 0.89011 0.81661 0.78043 1.90639 1.75300 1.34341 1.42966 1.21210 0.92233 1.00307 0.98432 0.89056 1.22044 1.02013 1.03851 0.93227 1.20454 0.88671 0.99435 1.01392 1.19899 0.96094 0.95862 0.94149 1.21280 0.93985 0.99292 0.97983 1.21128 0.94507 0.98336 0.98419 1.21025 1.00308 0.98012 0.94388 1.20901 0.92767 0.98674 0.93599 1.98368 1.78527 1.71115 1.56794 1.20972 0.92049 0.99750 0.99997 1.42463 1.78143 1.10415 1.05233 1.19257 1.35601 0.93775 0.87271 0.91443 1.24643 1.02537 0.95957 0.97766 1.69631 1.51592 1.08517 1.28686 0.86191 0.77245 0.78885 0.84362 1.20704 1.21990 1.22017 0.92598 0.93491 0.94338 0.91118 0.90193 0.93832 0.89292 0.90012 0.91925 0.91857 0.89627 0.90155 0.89692 0.85100 0.85090 0.85214 0.85008 0.78379 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 2 C 0.16 3.07 3.20 -67.93 -0.22 2.86 16 3 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 4 C 0.11 1.84 5.06 -4.04 -0.02 1.82 16 5 N -0.59 -9.74 2.73 -181.56 -0.50 -10.24 16 6 C 0.07 1.04 9.32 59.85 0.56 1.60 16 7 C 0.52 8.63 6.97 -10.99 -0.08 8.56 16 8 O -0.55 -10.68 15.55 5.56 0.09 -10.59 16 9 C -0.10 -1.32 1.91 -91.77 -0.18 -1.49 16 10 H 0.09 1.07 7.81 -51.93 -0.41 0.67 16 11 C -0.15 -2.12 8.04 37.15 0.30 -1.82 16 12 C -0.06 -0.74 4.13 -27.88 -0.12 -0.85 16 13 C -0.06 -0.63 4.73 -104.63 -0.49 -1.13 16 14 C -0.11 -1.06 8.22 -39.58 -0.33 -1.38 16 15 C -0.11 -0.93 10.04 -39.59 -0.40 -1.33 16 16 C -0.12 -1.08 9.83 -39.55 -0.39 -1.47 16 17 C -0.03 -0.33 6.32 -39.50 -0.25 -0.58 16 18 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 19 C -0.11 -1.12 9.49 -39.55 -0.38 -1.50 16 20 N -0.72 -16.77 4.57 -53.43 -0.24 -17.02 16 21 C -0.23 -6.03 9.93 -15.06 -0.15 -6.18 16 22 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -26.34 13.06 55.49 0.72 -25.61 16 25 Si 0.90 21.81 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.08 1.33 7.36 -51.93 -0.38 0.95 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.55 5.77 -51.93 -0.30 1.25 16 36 H 0.08 1.22 4.23 -51.93 -0.22 1.00 16 37 H 0.06 0.90 8.10 -51.92 -0.42 0.48 16 38 H 0.06 0.76 6.91 -51.93 -0.36 0.40 16 39 H 0.09 1.38 5.27 -51.93 -0.27 1.11 16 40 H 0.08 0.97 8.00 -51.93 -0.42 0.55 16 41 H 0.08 1.08 8.06 -51.93 -0.42 0.66 16 42 H 0.13 1.20 8.04 -52.49 -0.42 0.78 16 43 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 44 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 46 H 0.38 9.13 5.40 -40.82 -0.22 8.91 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 391.91 15.07 5.91 5.91 Total: -1.00 -29.84 391.91 -9.60 -39.44 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -7.18 Total: 9.50 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.87 Total: -5.93 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.01 Total: -52.87 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.84 -9.60 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.810 kcal (2) G-P(sol) polarization free energy of solvation -29.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds