Wall clock time and date at job start Tue Mar 31 2020 20:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47251 * 2 1 4 4 C 1.53009 * 109.46886 * 119.99404 * 2 1 3 5 5 N 1.46504 * 109.47110 * 175.00152 * 4 2 1 6 6 C 1.46502 * 119.99801 * 270.00347 * 5 4 2 7 7 C 1.34776 * 119.99882 * 90.00254 * 5 4 2 8 8 O 1.21277 * 120.00024 * 4.68164 * 7 5 4 9 9 C 1.50700 * 119.99438 * 184.69010 * 7 5 4 10 10 H 1.09003 * 109.46951 * 306.76571 * 9 7 5 11 11 C 1.52993 * 109.47775 * 66.77069 * 9 7 5 12 12 C 1.53007 * 109.46519 * 186.77482 * 9 7 5 13 13 C 1.50697 * 109.46887 * 174.99653 * 12 9 7 14 14 C 1.38268 * 119.99603 * 89.99877 * 13 12 9 15 15 C 1.38214 * 120.02812 * 180.02562 * 14 13 12 16 16 C 1.38235 * 120.01575 * 0.25421 * 15 14 13 17 17 C 1.38328 * 119.98257 * 359.50991 * 16 15 14 18 18 Cl 1.73604 * 120.01316 * 180.25041 * 17 16 15 19 19 C 1.38197 * 119.99770 * 270.02238 * 13 12 9 20 20 N 1.46494 * 109.47272 * 239.99353 * 2 1 3 21 21 C 1.36938 * 119.99988 * 85.00242 * 20 2 1 22 22 H 1.08000 * 119.99708 * 0.02562 * 21 20 2 23 23 C 1.38810 * 120.00336 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99820 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00237 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47087 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.46895 * 120.00394 * 25 23 21 28 28 H 1.48500 * 109.46838 * 240.00329 * 25 23 21 29 29 H 1.08997 * 109.46670 * 60.00263 * 1 2 3 30 30 H 1.08993 * 109.47331 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47438 * 300.00524 * 1 2 3 32 32 H 1.08997 * 109.46543 * 55.00261 * 4 2 1 33 33 H 1.08997 * 109.47039 * 294.99994 * 4 2 1 34 34 H 1.09005 * 109.46692 * 264.65384 * 6 5 4 35 35 H 1.09001 * 109.47016 * 24.65647 * 6 5 4 36 36 H 1.09001 * 109.47019 * 144.65440 * 6 5 4 37 37 H 1.09007 * 109.46791 * 69.37527 * 11 9 7 38 38 H 1.08995 * 109.47249 * 189.36952 * 11 9 7 39 39 H 1.09001 * 109.47302 * 309.37579 * 11 9 7 40 40 H 1.08999 * 109.47434 * 54.99900 * 12 9 7 41 41 H 1.08998 * 109.47079 * 294.98936 * 12 9 7 42 42 H 1.07996 * 119.98221 * 0.02562 * 14 13 12 43 43 H 1.08003 * 119.99591 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.00967 * 179.74465 * 16 15 14 45 45 H 1.08007 * 120.00198 * 359.97220 * 19 13 12 46 46 H 0.96997 * 120.00314 * 264.99694 * 20 2 1 47 47 H 0.96998 * 120.00371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.5000 -0.8263 1.1908 6 6 4.1258 -1.9919 0.5615 7 6 4.2675 0.1493 1.7158 8 8 3.7524 1.0718 2.3113 9 6 5.7657 0.0939 1.5627 10 1 6.1317 -0.8698 1.9171 11 6 6.1346 0.2688 0.0883 12 6 6.4040 1.2154 2.3848 13 6 7.9045 1.0859 2.3312 14 6 8.6182 1.7248 1.3341 15 6 9.9943 1.6061 1.2840 16 6 10.6575 0.8441 2.2277 17 6 9.9445 0.2087 3.2283 18 17 10.7771 -0.7430 4.4177 19 6 8.5669 0.3283 3.2783 20 7 2.0183 -0.6907 -1.1960 21 6 2.1492 -0.0077 -2.3757 22 1 1.8927 1.0403 -2.4241 23 6 2.6124 -0.6620 -3.5089 24 7 2.9254 -1.9390 -3.4497 25 14 2.7902 0.2696 -5.1182 26 1 2.3753 1.6818 -4.9212 27 1 4.2071 0.2275 -5.5606 28 1 1.9300 -0.3599 -6.1521 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1581 2.1370 34 1 4.3687 -2.7305 1.3255 35 1 3.4360 -2.4291 -0.1604 36 1 5.0382 -1.6833 0.0513 37 1 5.9194 1.2916 -0.2212 38 1 7.1966 0.0641 -0.0473 39 1 5.5507 -0.4246 -0.5171 40 1 6.0699 1.1428 3.4198 41 1 6.1078 2.1807 1.9742 42 1 8.1002 2.3168 0.5942 43 1 10.5513 2.1050 0.5047 44 1 11.7324 0.7480 2.1860 45 1 8.0092 -0.1707 4.0572 46 1 2.2491 -1.6318 -1.1524 47 1 3.2488 -2.3964 -4.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734360779.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:12 Heat of formation + Delta-G solvation = -25.021220 kcal Electronic energy + Delta-G solvation = -27492.250486 eV Core-core repulsion = 23700.390774 eV Total energy + Delta-G solvation = -3791.859712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34830 -40.25837 -38.00582 -37.47751 -36.06183 -35.62513 -33.89719 -32.06951 -31.53742 -30.60621 -28.28515 -27.64478 -27.18617 -25.68473 -24.14555 -23.45942 -22.21072 -21.50960 -19.86918 -19.24075 -18.27415 -17.57686 -17.16023 -16.82821 -16.55915 -16.42309 -16.23263 -15.64611 -15.41493 -15.31029 -14.79108 -14.66219 -14.43180 -13.99447 -13.77940 -13.70605 -13.61324 -13.57182 -13.27003 -13.06762 -13.04518 -12.82007 -12.72625 -12.49792 -12.46313 -12.38959 -12.25332 -12.13806 -11.97520 -11.92978 -11.74714 -11.69238 -11.58428 -10.97241 -10.62095 -9.83786 -9.60053 -9.49648 -8.91174 -7.89245 -5.14168 0.20022 0.31165 1.16659 1.46334 1.49052 1.56529 1.67297 2.17840 2.58551 2.67755 3.43410 3.46273 3.81605 3.84405 3.90282 4.00159 4.04344 4.13011 4.20543 4.30963 4.33043 4.41290 4.41756 4.48094 4.62388 4.64233 4.71077 4.74491 4.79003 4.81294 4.91436 4.94194 4.99354 5.00868 5.13807 5.17176 5.26698 5.27903 5.39216 5.41057 5.44606 5.56064 5.60903 5.71654 5.86910 6.33286 6.51846 7.24165 7.41634 8.14122 8.43078 9.33256 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013136 B = 0.002888 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.024954 B = 9694.347281 C =10834.138787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.022 0.978 4 C 0.114 3.886 5 N -0.596 5.596 6 C 0.072 3.928 7 C 0.513 3.487 8 O -0.585 6.585 9 C -0.091 4.091 10 H 0.111 0.889 11 C -0.145 4.145 12 C -0.053 4.053 13 C -0.067 4.067 14 C -0.115 4.115 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.043 4.043 18 Cl -0.075 7.075 19 C -0.115 4.115 20 N -0.722 5.722 21 C -0.228 4.228 22 H 0.058 0.942 23 C -0.061 4.061 24 N -0.957 5.957 25 Si 0.956 3.044 26 H -0.277 1.277 27 H -0.292 1.292 28 H -0.297 1.297 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.155 0.845 44 H 0.148 0.852 45 H 0.137 0.863 46 H 0.378 0.622 47 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 1.978 14.074 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 H 0.040 0.960 4 C -0.009 4.009 5 N -0.326 5.326 6 C -0.070 4.070 7 C 0.303 3.697 8 O -0.466 6.466 9 C -0.112 4.112 10 H 0.129 0.871 11 C -0.202 4.202 12 C -0.090 4.090 13 C -0.068 4.068 14 C -0.133 4.133 15 C -0.122 4.122 16 C -0.137 4.137 17 C -0.070 4.070 18 Cl -0.047 7.047 19 C -0.134 4.134 20 N -0.365 5.365 21 C -0.360 4.360 22 H 0.076 0.924 23 C -0.254 4.254 24 N -0.608 5.608 25 Si 0.787 3.213 26 H -0.203 1.203 27 H -0.219 1.219 28 H -0.224 1.224 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.152 0.848 43 H 0.172 0.828 44 H 0.165 0.835 45 H 0.155 0.845 46 H 0.213 0.787 47 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.070 2.487 14.373 20.266 hybrid contribution -0.128 -0.025 -1.171 1.178 sum 13.942 2.462 13.202 19.358 Atomic orbital electron populations 1.22222 0.97062 1.01419 1.00653 1.20758 0.93136 0.94737 0.86946 0.96002 1.21750 0.79708 1.01750 0.97723 1.47683 1.06487 1.21748 1.56685 1.22181 0.99810 0.87185 0.97816 1.21043 0.90421 0.80971 0.77306 1.90616 1.76163 1.35418 1.44413 1.21188 0.89822 1.01892 0.98283 0.87077 1.21935 1.02806 1.02322 0.93094 1.20306 0.89746 0.98227 1.00757 1.19749 0.95105 0.96914 0.94990 1.21426 0.94693 0.99296 0.97917 1.21399 0.94127 0.97906 0.98746 1.21303 1.01296 0.97288 0.93823 1.21031 0.92815 0.99059 0.94050 1.98368 1.78399 1.71095 1.56793 1.21042 0.92403 0.99834 1.00079 1.42510 1.78327 1.10247 1.05427 1.19406 1.34578 0.93512 0.88511 0.92372 1.25216 1.03243 0.96766 1.00218 1.69742 1.52674 1.09430 1.28991 0.85335 0.76847 0.78005 0.81151 1.20253 1.21944 1.22410 0.94526 0.92735 0.91580 0.89235 0.89679 0.90541 0.91667 0.89976 0.93157 0.89822 0.92035 0.90430 0.90957 0.84757 0.82761 0.83454 0.84536 0.78692 0.94132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.49 71.98 0.68 -4.69 16 2 C 0.15 6.10 3.20 44.99 0.14 6.25 16 3 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 4 C 0.11 3.76 5.06 86.38 0.44 4.20 16 5 N -0.60 -19.25 2.73 -846.73 -2.31 -21.56 16 6 C 0.07 2.12 9.32 127.77 1.19 3.31 16 7 C 0.51 16.86 6.97 87.66 0.61 17.47 16 8 O -0.58 -22.67 15.55 -3.02 -0.05 -22.72 16 9 C -0.09 -2.31 1.91 -11.54 -0.02 -2.33 16 10 H 0.11 2.40 7.81 -2.39 -0.02 2.38 16 11 C -0.14 -3.90 8.04 71.98 0.58 -3.32 16 12 C -0.05 -1.23 4.13 29.85 0.12 -1.10 16 13 C -0.07 -1.34 4.73 -19.87 -0.09 -1.44 16 14 C -0.12 -2.09 8.22 22.27 0.18 -1.91 16 15 C -0.10 -1.58 10.04 22.26 0.22 -1.36 16 16 C -0.12 -1.88 9.83 22.29 0.22 -1.66 16 17 C -0.04 -0.79 6.32 22.32 0.14 -0.65 16 18 Cl -0.08 -1.32 28.96 -2.72 -0.08 -1.40 16 19 C -0.11 -2.20 9.49 22.29 0.21 -1.99 16 20 N -0.72 -33.95 4.57 -322.94 -1.47 -35.42 16 21 C -0.23 -12.19 9.93 84.03 0.83 -11.35 16 22 H 0.06 3.17 7.83 -2.91 -0.02 3.15 16 23 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 24 N -0.96 -54.23 13.06 21.65 0.28 -53.94 16 25 Si 0.96 45.02 29.55 68.60 2.03 47.05 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 2.61 8.07 -2.39 -0.02 2.59 16 33 H 0.08 2.74 7.36 -2.39 -0.02 2.72 16 34 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 35 H 0.06 2.25 5.77 -2.39 -0.01 2.24 16 36 H 0.08 2.41 4.23 -2.39 -0.01 2.40 16 37 H 0.05 1.46 8.10 -2.38 -0.02 1.44 16 38 H 0.08 1.89 6.91 -2.39 -0.02 1.88 16 39 H 0.06 1.99 5.27 -2.39 -0.01 1.97 16 40 H 0.08 1.84 8.00 -2.39 -0.02 1.82 16 41 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 42 H 0.13 2.30 8.04 -2.91 -0.02 2.28 16 43 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.14 2.40 8.06 -2.91 -0.02 2.37 16 46 H 0.38 18.26 5.40 -92.71 -0.50 17.76 16 47 H 0.25 13.86 8.31 -92.71 -0.77 13.08 16 Total: -1.00 -63.61 391.91 4.80 -58.81 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.47 Total: 32.66 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.93 Total: -3.47 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -3.50 Total: -110.92 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.40 kcal Total: -63.61 4.80 -58.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734360779.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.792 kcal (2) G-P(sol) polarization free energy of solvation -63.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds