Wall clock time and date at job start Tue Mar 31 2020 20:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.34777 * 120.00376 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99593 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.54221 * 59.82314 * 9 7 6 11 11 F 1.39899 * 109.47230 * 59.99964 * 10 9 7 12 12 F 1.39900 * 109.46950 * 180.02562 * 10 9 7 13 13 F 1.39898 * 109.47230 * 299.99944 * 10 9 7 14 14 C 1.53175 * 109.54089 * 299.55476 * 9 7 6 15 15 C 1.53097 * 109.16296 * 297.11465 * 14 9 7 16 16 O 1.42900 * 109.41233 * 302.39259 * 15 14 9 17 17 C 1.42899 * 114.10109 * 61.15915 * 16 15 14 18 18 C 1.53088 * 109.41481 * 298.84258 * 17 16 15 19 19 N 1.46506 * 109.47102 * 120.00504 * 2 1 3 20 20 C 1.36934 * 119.99539 * 274.99977 * 19 2 1 21 21 H 1.07998 * 120.00501 * 359.97438 * 20 19 2 22 22 C 1.38817 * 119.99782 * 180.02562 * 20 19 2 23 23 N 1.31620 * 119.99787 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00061 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47465 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47413 * 119.99663 * 24 22 20 27 27 H 1.48501 * 109.47197 * 239.99490 * 24 22 20 28 28 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 29 29 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 30 30 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 32 32 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 33 33 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 35 35 H 0.97004 * 119.99396 * 0.02562 * 6 5 4 36 36 H 1.08998 * 109.52388 * 57.02233 * 14 9 7 37 37 H 1.08997 * 109.51870 * 177.21210 * 14 9 7 38 38 H 1.09005 * 109.47930 * 182.41330 * 15 14 9 39 39 H 1.08994 * 109.48954 * 62.38118 * 15 14 9 40 40 H 1.08999 * 109.48434 * 178.85274 * 17 16 15 41 41 H 1.09005 * 109.48738 * 58.82931 * 17 16 15 42 42 H 1.09002 * 109.52363 * 297.69811 * 18 17 16 43 43 H 1.09002 * 109.52240 * 177.51172 * 18 17 16 44 44 H 0.96993 * 119.99992 * 94.99462 * 19 2 1 45 45 H 0.97005 * 119.99558 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 7 4.0530 -1.3034 -2.5103 7 6 5.3739 -1.3396 -2.7755 8 8 6.1584 -0.8012 -2.0234 9 6 5.8761 -2.0490 -4.0067 10 6 5.2641 -1.4064 -5.2530 11 9 5.6313 -0.0577 -5.3105 12 9 5.7308 -2.0664 -6.3949 13 9 3.8701 -1.5080 -5.1933 14 6 5.4806 -3.5274 -3.9433 15 6 6.1610 -4.1783 -2.7361 16 8 7.5767 -4.0166 -2.8445 17 6 8.0089 -2.6547 -2.8604 18 6 7.4028 -1.9425 -4.0724 19 7 2.0184 -0.6907 1.1962 20 6 2.1491 -0.0076 2.3757 21 1 1.8927 1.0403 2.4242 22 6 2.6123 -0.6619 3.5090 23 7 2.9254 -1.9390 3.4498 24 14 2.7914 0.2700 5.1179 25 1 2.3775 1.6824 4.9207 26 1 1.9311 -0.3585 6.1525 27 1 4.2085 0.2270 5.5598 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.7515 -1.7715 -1.2057 32 1 1.6053 -0.2617 -2.1370 33 1 3.8531 0.4369 -1.3574 34 1 3.9994 -1.0728 -0.4261 35 1 3.4256 -1.7343 -3.1116 36 1 4.3987 -3.6110 -3.8405 37 1 5.8006 -4.0295 -4.8563 38 1 5.9173 -5.2405 -2.7105 39 1 5.8098 -3.7026 -1.8205 40 1 9.0964 -2.6191 -2.9241 41 1 7.6820 -2.1587 -1.9464 42 1 7.7615 -2.4126 -4.9881 43 1 7.6955 -0.8926 -4.0620 44 1 2.2490 -1.6319 1.1525 45 1 3.2487 -2.3963 4.2418 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753006546.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:43 Heat of formation + Delta-G solvation = -233.298547 kcal Electronic energy + Delta-G solvation = -31734.179794 eV Core-core repulsion = 26950.722595 eV Total energy + Delta-G solvation = -4783.457199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.57029 -48.05972 -47.97884 -40.99439 -38.47631 -36.67765 -34.81792 -34.50277 -32.32037 -31.44822 -29.43776 -28.30896 -27.67853 -24.46463 -24.10364 -23.72012 -22.99476 -21.79699 -20.39697 -19.59281 -18.78445 -18.73621 -18.46135 -17.28338 -16.92493 -16.21075 -16.12212 -15.60024 -15.33004 -15.06950 -14.96144 -14.79248 -14.67676 -14.41725 -14.19290 -14.13735 -14.12226 -13.97605 -13.83200 -13.51233 -13.11059 -12.75743 -12.68604 -12.53379 -12.33486 -12.07973 -11.73406 -11.59831 -11.29920 -11.14594 -10.96941 -10.85797 -10.79297 -10.65460 -10.34250 -10.14177 -9.94524 -9.67069 -9.62885 -9.04727 -8.91762 -6.97890 -5.77658 -3.06332 1.92145 2.54088 2.78644 3.29029 3.43542 3.44380 3.49547 3.51422 3.64949 3.69890 4.17269 4.17729 4.40904 4.54497 4.59078 4.88463 4.97193 5.09082 5.15075 5.20676 5.33148 5.36027 5.42251 5.52326 5.56360 5.62133 5.66421 5.80924 5.83489 6.01383 6.11940 6.25472 6.31571 6.37023 6.53160 6.63747 6.82441 6.94396 7.02648 7.32508 7.70737 7.98289 8.40687 9.52438 10.08230 10.42989 11.45025 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014445 B = 0.003274 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.953723 B = 8551.078104 C = 9604.901715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.120 3.880 6 N -0.718 5.718 7 C 0.518 3.482 8 O -0.508 6.508 9 C -0.129 4.129 10 C 0.466 3.534 11 F -0.172 7.172 12 F -0.173 7.173 13 F -0.177 7.177 14 C -0.148 4.148 15 C 0.062 3.938 16 O -0.378 6.378 17 C 0.053 3.947 18 C -0.133 4.133 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.399 0.601 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.383 0.617 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.009 -3.150 -21.398 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.064 3.936 3 H 0.068 0.932 4 C -0.172 4.172 5 C -0.002 4.002 6 N -0.370 5.370 7 C 0.301 3.699 8 O -0.383 6.383 9 C -0.134 4.134 10 C 0.411 3.589 11 F -0.154 7.154 12 F -0.155 7.155 13 F -0.158 7.158 14 C -0.186 4.186 15 C -0.015 4.015 16 O -0.296 6.296 17 C -0.023 4.023 18 C -0.171 4.171 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.126 0.874 39 H 0.079 0.921 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.686 -2.744 -20.725 21.666 hybrid contribution -0.627 0.334 0.291 0.767 sum 5.060 -2.410 -20.435 21.189 Atomic orbital electron populations 1.22420 0.99035 1.00868 1.00025 1.20148 0.91957 0.95576 0.85899 0.93227 1.22076 0.93568 1.01973 0.99582 1.21575 0.94791 0.97317 0.86475 1.46291 1.06604 1.56319 1.27834 1.19573 0.83348 0.80808 0.86209 1.90733 1.54803 1.44147 1.48588 1.22347 1.00696 0.98984 0.91359 1.20118 0.76321 0.77112 0.85322 1.93231 1.91240 1.34205 1.96697 1.93193 1.88335 1.80633 1.53290 1.93139 1.30506 1.95922 1.96279 1.22382 1.02766 0.90414 1.03053 1.22564 0.81369 1.01895 0.95654 1.87935 1.21422 1.25887 1.94395 1.22838 0.99873 0.81936 0.97684 1.22145 0.88891 1.04192 1.01896 1.42454 1.78117 1.10625 1.05361 1.19267 1.36450 0.93882 0.87324 0.91148 1.24714 1.02105 0.95947 0.98028 1.69662 1.50974 1.08666 1.28777 0.86156 0.77330 0.78826 0.84115 1.20580 1.21941 1.21878 0.92673 0.94540 0.93499 0.91481 0.91779 0.91400 0.89249 0.76495 0.89032 0.88414 0.87448 0.92115 0.88030 0.89791 0.89222 0.88691 0.78323 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.49 37.16 0.35 -2.42 16 2 C 0.17 3.24 2.89 -67.93 -0.20 3.04 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.95 4.87 -26.73 -0.13 -2.08 16 5 C 0.12 1.89 5.56 -4.04 -0.02 1.87 16 6 N -0.72 -9.24 5.13 -60.29 -0.31 -9.55 16 7 C 0.52 7.07 4.89 -10.98 -0.05 7.02 16 8 O -0.51 -8.69 13.84 5.55 0.08 -8.61 16 9 C -0.13 -1.36 0.25 -155.48 -0.04 -1.40 16 10 C 0.47 4.78 2.22 37.16 0.08 4.87 16 11 F -0.17 -2.02 16.58 2.25 0.04 -1.99 16 12 F -0.17 -1.66 16.18 2.25 0.04 -1.62 16 13 F -0.18 -1.74 14.65 2.25 0.03 -1.71 16 14 C -0.15 -1.29 4.61 -26.59 -0.12 -1.41 16 15 C 0.06 0.64 6.62 37.21 0.25 0.88 16 16 O -0.38 -4.48 10.76 -35.23 -0.38 -4.86 16 17 C 0.05 0.60 6.55 37.20 0.24 0.84 16 18 C -0.13 -1.35 4.31 -26.60 -0.11 -1.46 16 19 N -0.72 -17.19 4.57 -53.42 -0.24 -17.43 16 20 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 21 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -27.72 13.06 55.49 0.72 -26.99 16 24 Si 0.90 22.33 29.55 -169.99 -5.02 17.31 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.09 1.73 7.75 -51.93 -0.40 1.33 16 35 H 0.40 4.18 6.05 -40.82 -0.25 3.93 16 36 H 0.09 0.67 7.29 -51.93 -0.38 0.29 16 37 H 0.10 0.73 7.73 -51.93 -0.40 0.32 16 38 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 40 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.08 1.16 5.80 -51.93 -0.30 0.86 16 42 H 0.09 0.76 7.73 -51.93 -0.40 0.36 16 43 H 0.09 0.99 7.79 -51.93 -0.40 0.58 16 44 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -31.13 368.02 -6.09 -37.22 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.59 Total: 9.98 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 0.00 Total: 2.71 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.17 Total: -53.98 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.30 Total: -13.47 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.11 Total: -5.32 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.13 -6.09 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753006546.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -196.083 kcal (2) G-P(sol) polarization free energy of solvation -31.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds