Wall clock time and date at job start Tue Mar 31 2020 21:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47107 * 2 1 4 4 C 1.53009 * 109.46382 * 240.00489 * 2 1 3 5 5 N 1.46497 * 109.47064 * 65.00353 * 4 2 1 6 6 C 1.36939 * 119.99858 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00208 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99823 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99960 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00364 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46876 * 89.99649 * 10 8 6 12 12 H 1.48495 * 109.47307 * 209.99732 * 10 8 6 13 13 H 1.48497 * 109.47011 * 330.00126 * 10 8 6 14 14 C 1.52993 * 109.47399 * 120.00922 * 2 1 3 15 15 N 1.46505 * 109.47021 * 294.99505 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47466 * 59.99942 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 C 1.50699 * 109.46956 * 179.97438 * 18 16 15 22 22 C 1.38234 * 120.00926 * 239.99607 * 21 18 16 23 23 C 1.38216 * 120.01718 * 179.97438 * 22 21 18 24 24 C 1.38262 * 120.02641 * 0.05083 * 23 22 21 25 25 C 1.38190 * 120.01176 * 359.97438 * 24 23 22 26 26 C 1.38339 * 120.00647 * 59.72728 * 21 18 16 27 27 Cl 1.73596 * 120.01204 * 359.97159 * 26 21 18 28 28 H 1.08992 * 109.47506 * 59.98900 * 1 2 3 29 29 H 1.09000 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46446 * 299.99332 * 1 2 3 31 31 H 1.09002 * 109.46743 * 184.99919 * 4 2 1 32 32 H 1.08999 * 109.47110 * 304.99856 * 4 2 1 33 33 H 0.97002 * 120.00298 * 359.97438 * 5 4 2 34 34 H 0.96999 * 120.00075 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47250 * 174.99491 * 14 2 1 36 36 H 1.09002 * 109.47722 * 54.99417 * 14 2 1 37 37 H 0.97000 * 119.99611 * 359.97438 * 15 14 2 38 38 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 39 39 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 40 40 H 1.09004 * 109.47261 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 42 42 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 43 43 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 44 44 H 1.08007 * 119.98797 * 0.02562 * 22 21 18 45 45 H 1.07997 * 119.98985 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.99440 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.00586 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 -1.2494 5 7 1.6523 0.0356 -2.4424 6 6 2.0016 -0.4200 -3.6857 7 1 2.5626 -1.3374 -3.7867 8 6 1.6339 0.2968 -4.8161 9 7 1.9693 -0.1413 -6.0111 10 14 0.6632 1.8832 -4.6414 11 1 1.6021 3.0278 -4.5249 12 1 -0.1991 2.0699 -5.8359 13 1 -0.1851 1.8130 -3.4246 14 6 2.0400 -0.7214 1.2490 15 7 1.6526 0.0351 2.4423 16 6 1.9967 -0.4135 3.6658 17 8 2.6266 -1.4436 3.7789 18 6 1.5976 0.3644 4.8932 19 6 0.0727 0.4731 4.9548 20 6 2.2067 1.7665 4.8289 21 6 2.1001 -0.3461 6.1236 22 6 1.2063 -0.7808 7.0843 23 6 1.6670 -1.4329 8.2126 24 6 3.0220 -1.6499 8.3815 25 6 3.9165 -1.2153 7.4220 26 6 3.4554 -0.5683 6.2891 27 17 4.5778 -0.0294 5.0793 28 1 -0.3634 0.5140 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 3.1262 -0.7995 -1.2058 32 1 1.6052 -1.7197 -1.2954 33 1 1.1482 0.8593 -2.3517 34 1 1.7127 0.3598 -6.8010 35 1 3.1264 -0.7997 1.2053 36 1 1.6054 -1.7200 1.2950 37 1 1.1491 0.8592 2.3518 38 1 -0.3612 -0.5257 5.0006 39 1 -0.2911 0.9868 4.0649 40 1 -0.2159 1.0355 5.8429 41 1 1.9184 2.3290 5.7168 42 1 3.2931 1.6890 4.7850 43 1 1.8429 2.2802 3.9389 44 1 0.1477 -0.6116 6.9529 45 1 0.9683 -1.7728 8.9627 46 1 3.3814 -2.1592 9.2635 47 1 4.9749 -1.3853 7.5539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753638122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:58 Heat of formation + Delta-G solvation = -10.339482 kcal Electronic energy + Delta-G solvation = -27132.641452 eV Core-core repulsion = 23341.418388 eV Total energy + Delta-G solvation = -3791.223064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.92278 -39.08805 -37.00972 -36.59319 -35.58035 -34.45836 -32.45145 -31.14102 -30.61402 -29.94325 -27.87180 -26.72482 -25.68725 -24.23736 -22.72045 -22.40477 -21.54396 -20.37368 -19.52308 -17.88847 -17.46610 -16.94167 -16.21763 -15.87919 -15.48534 -15.13580 -14.76625 -14.50165 -14.39348 -14.15471 -14.12846 -13.94834 -13.61178 -13.22790 -12.99465 -12.65187 -12.54776 -12.49373 -12.43167 -12.27594 -12.19653 -12.05450 -11.65824 -11.49652 -11.41833 -11.36207 -11.02905 -10.75159 -10.62038 -10.58363 -10.41982 -10.13854 -9.73662 -9.58087 -9.21305 -9.03029 -8.90566 -8.86416 -7.23536 -5.76899 -3.12518 0.87082 0.94121 2.00805 2.62336 3.04335 3.34879 3.37496 3.41916 3.43805 4.02748 4.31356 4.54131 4.57986 4.59784 4.66512 4.70101 4.88935 4.95457 5.08324 5.10721 5.17448 5.24191 5.29642 5.32435 5.37339 5.44212 5.53837 5.56329 5.65118 5.67742 5.74404 5.82766 5.89060 5.92361 5.93936 6.04992 6.09320 6.09724 6.24109 6.43533 6.46360 6.47003 6.66165 6.75404 7.45796 7.99600 8.20054 8.42035 9.20910 9.92970 10.12772 11.41584 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.002317 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.994550 B =12082.512741 C =12463.570743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 H 0.075 0.925 4 C 0.165 3.835 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.090 0.910 8 C 0.003 3.997 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.129 3.871 15 N -0.724 5.724 16 C 0.523 3.477 17 O -0.524 6.524 18 C -0.043 4.043 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.053 4.053 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.109 4.109 25 C -0.115 4.115 26 C -0.004 4.004 27 Cl -0.054 7.054 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.398 0.602 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.135 0.865 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 2.776 33.451 33.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 H 0.093 0.907 4 C 0.037 3.963 5 N -0.400 5.400 6 C -0.373 4.373 7 H 0.108 0.892 8 C -0.193 4.193 9 N -0.582 5.582 10 Si 0.716 3.284 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.005 3.995 15 N -0.376 5.376 16 C 0.307 3.693 17 O -0.399 6.399 18 C -0.047 4.047 19 C -0.201 4.201 20 C -0.213 4.213 21 C -0.054 4.054 22 C -0.123 4.123 23 C -0.138 4.138 24 C -0.127 4.127 25 C -0.133 4.133 26 C -0.030 4.030 27 Cl -0.025 7.025 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.232 0.768 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.153 0.847 45 H 0.146 0.854 46 H 0.148 0.852 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.693 1.909 33.209 33.307 hybrid contribution -0.828 1.537 -0.265 1.766 sum -2.521 3.446 32.944 33.219 Atomic orbital electron populations 1.21810 0.94804 1.02238 1.01169 1.21602 0.96591 1.00525 0.94638 0.90650 1.20550 0.97202 0.94217 0.84304 1.42685 1.67645 1.27316 1.02364 1.19068 1.29290 1.07169 0.81757 0.89184 1.24683 1.00826 0.98667 0.95110 1.69704 1.51362 1.40239 0.96921 0.86538 0.80234 0.84843 0.76819 1.21114 1.21731 1.20393 1.21366 1.00249 0.95216 0.82630 1.45975 1.57995 1.27849 1.05745 1.20112 0.79417 0.85627 0.84113 1.90739 1.38707 1.24056 1.86363 1.19715 0.97651 0.96191 0.91103 1.21968 0.91913 1.02978 1.03252 1.22188 1.03345 0.92850 1.02918 1.19201 0.91485 0.99259 0.95503 1.21117 0.99724 0.97992 0.93487 1.21191 0.95781 0.98993 0.97824 1.21106 0.93172 0.99552 0.98909 1.21045 1.00726 0.98632 0.92927 1.20712 0.90323 1.00646 0.91363 1.98360 1.61007 1.87644 1.55487 0.91818 0.92396 0.93714 0.95252 0.95181 0.80651 0.93065 0.91252 0.91243 0.76779 0.91483 0.91357 0.90884 0.91310 0.90297 0.91493 0.84737 0.85448 0.85249 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.94 37.16 0.33 -1.58 16 2 C -0.11 -1.63 2.46 -90.62 -0.22 -1.86 16 3 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 4 C 0.17 3.14 5.65 -4.04 -0.02 3.11 16 5 N -0.75 -17.74 5.13 -59.91 -0.31 -18.05 16 6 C -0.24 -6.92 10.47 -15.06 -0.16 -7.07 16 7 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 8 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 9 N -0.93 -29.52 13.97 55.49 0.78 -28.75 16 10 Si 0.89 21.99 27.74 -169.99 -4.71 17.27 16 11 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 13 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 14 C 0.13 1.70 5.06 -4.04 -0.02 1.68 16 15 N -0.72 -8.00 5.07 -60.30 -0.31 -8.30 16 16 C 0.52 6.36 5.38 -10.99 -0.06 6.30 16 17 O -0.52 -8.29 13.84 5.56 0.08 -8.22 16 18 C -0.04 -0.40 0.60 -156.81 -0.09 -0.49 16 19 C -0.14 -0.96 7.03 37.16 0.26 -0.70 16 20 C -0.16 -1.25 8.12 37.16 0.30 -0.94 16 21 C -0.05 -0.54 4.38 -104.59 -0.46 -0.99 16 22 C -0.11 -0.86 8.97 -39.59 -0.36 -1.21 16 23 C -0.12 -0.87 10.05 -39.58 -0.40 -1.26 16 24 C -0.11 -0.82 10.05 -39.59 -0.40 -1.22 16 25 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 26 C 0.00 -0.04 5.46 -39.49 -0.22 -0.26 16 27 Cl -0.05 -0.65 22.79 -51.86 -1.18 -1.83 16 28 H 0.06 0.98 7.18 -51.93 -0.37 0.61 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.04 0.47 7.18 -51.93 -0.37 0.09 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.36 8.18 4.71 -40.82 -0.19 7.98 16 34 H 0.26 7.78 8.31 -40.82 -0.34 7.45 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.40 3.50 6.49 -40.82 -0.26 3.24 16 38 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 39 H 0.07 0.39 7.57 -51.93 -0.39 0.00 16 40 H 0.07 0.36 7.51 -51.93 -0.39 -0.03 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.74 4.98 -51.93 -0.26 0.48 16 43 H 0.07 0.45 7.56 -51.93 -0.39 0.06 16 44 H 0.13 0.81 5.89 -52.48 -0.31 0.50 16 45 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 47 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 381.36 15.07 5.75 5.75 Total: -1.00 -34.33 381.36 -9.06 -43.38 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.16 Total: 6.71 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.99 Total: -7.97 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: 0.16 Total: -55.10 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.22 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.18 Total: -1.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.33 -9.06 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.045 kcal (2) G-P(sol) polarization free energy of solvation -34.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds