Wall clock time and date at job start Tue Mar 31 2020 21:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47107 * 2 1 4 4 C 1.53009 * 109.46382 * 240.00489 * 2 1 3 5 5 N 1.46497 * 109.47064 * 65.00353 * 4 2 1 6 6 C 1.36939 * 119.99858 * 179.97438 * 5 4 2 7 7 H 1.08000 * 120.00208 * 0.02562 * 6 5 4 8 8 C 1.38810 * 119.99823 * 179.97438 * 6 5 4 9 9 N 1.31624 * 119.99960 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00364 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.46876 * 89.99649 * 10 8 6 12 12 H 1.48495 * 109.47307 * 209.99732 * 10 8 6 13 13 H 1.48497 * 109.47011 * 330.00126 * 10 8 6 14 14 C 1.52993 * 109.47399 * 120.00922 * 2 1 3 15 15 N 1.46505 * 109.47021 * 294.99505 * 14 2 1 16 16 C 1.34778 * 119.99943 * 180.02562 * 15 14 2 17 17 O 1.21277 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99637 * 180.02562 * 16 15 14 19 19 C 1.52997 * 109.47466 * 59.99942 * 18 16 15 20 20 C 1.53006 * 109.47239 * 299.99654 * 18 16 15 21 21 C 1.50699 * 109.46956 * 179.97438 * 18 16 15 22 22 C 1.38234 * 120.00926 * 239.99607 * 21 18 16 23 23 C 1.38216 * 120.01718 * 179.97438 * 22 21 18 24 24 C 1.38262 * 120.02641 * 0.05083 * 23 22 21 25 25 C 1.38190 * 120.01176 * 359.97438 * 24 23 22 26 26 C 1.38339 * 120.00647 * 59.72728 * 21 18 16 27 27 Cl 1.73596 * 120.01204 * 359.97159 * 26 21 18 28 28 H 1.08992 * 109.47506 * 59.98900 * 1 2 3 29 29 H 1.09000 * 109.47107 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46446 * 299.99332 * 1 2 3 31 31 H 1.09002 * 109.46743 * 184.99919 * 4 2 1 32 32 H 1.08999 * 109.47110 * 304.99856 * 4 2 1 33 33 H 0.97002 * 120.00298 * 359.97438 * 5 4 2 34 34 H 0.96999 * 120.00075 * 180.02562 * 9 8 6 35 35 H 1.09000 * 109.47250 * 174.99491 * 14 2 1 36 36 H 1.09002 * 109.47722 * 54.99417 * 14 2 1 37 37 H 0.97000 * 119.99611 * 359.97438 * 15 14 2 38 38 H 1.09002 * 109.47153 * 59.99773 * 19 18 16 39 39 H 1.09001 * 109.46832 * 299.99964 * 19 18 16 40 40 H 1.09004 * 109.47261 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.46955 * 180.02562 * 20 18 16 42 42 H 1.09000 * 109.47050 * 300.00336 * 20 18 16 43 43 H 1.09001 * 109.47002 * 60.00070 * 20 18 16 44 44 H 1.08007 * 119.98797 * 0.02562 * 22 21 18 45 45 H 1.07997 * 119.98985 * 180.02562 * 23 22 21 46 46 H 1.07997 * 119.99440 * 179.97438 * 24 23 22 47 47 H 1.08005 * 120.00586 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0398 -0.7212 -1.2494 5 7 1.6523 0.0356 -2.4424 6 6 2.0016 -0.4200 -3.6857 7 1 2.5626 -1.3374 -3.7867 8 6 1.6339 0.2968 -4.8161 9 7 1.9693 -0.1413 -6.0111 10 14 0.6632 1.8832 -4.6414 11 1 1.6021 3.0278 -4.5249 12 1 -0.1991 2.0699 -5.8359 13 1 -0.1851 1.8130 -3.4246 14 6 2.0400 -0.7214 1.2490 15 7 1.6526 0.0351 2.4423 16 6 1.9967 -0.4135 3.6658 17 8 2.6266 -1.4436 3.7789 18 6 1.5976 0.3644 4.8932 19 6 0.0727 0.4731 4.9548 20 6 2.2067 1.7665 4.8289 21 6 2.1001 -0.3461 6.1236 22 6 1.2063 -0.7808 7.0843 23 6 1.6670 -1.4329 8.2126 24 6 3.0220 -1.6499 8.3815 25 6 3.9165 -1.2153 7.4220 26 6 3.4554 -0.5683 6.2891 27 17 4.5778 -0.0294 5.0793 28 1 -0.3634 0.5140 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 3.1262 -0.7995 -1.2058 32 1 1.6052 -1.7197 -1.2954 33 1 1.1482 0.8593 -2.3517 34 1 1.7127 0.3598 -6.8010 35 1 3.1264 -0.7997 1.2053 36 1 1.6054 -1.7200 1.2950 37 1 1.1491 0.8592 2.3518 38 1 -0.3612 -0.5257 5.0006 39 1 -0.2911 0.9868 4.0649 40 1 -0.2159 1.0355 5.8429 41 1 1.9184 2.3290 5.7168 42 1 3.2931 1.6890 4.7850 43 1 1.8429 2.2802 3.9389 44 1 0.1477 -0.6116 6.9529 45 1 0.9683 -1.7728 8.9627 46 1 3.3814 -2.1592 9.2635 47 1 4.9749 -1.3853 7.5539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753638122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:57 Heat of formation + Delta-G solvation = -32.075738 kcal Electronic energy + Delta-G solvation = -27133.584006 eV Core-core repulsion = 23341.418388 eV Total energy + Delta-G solvation = -3792.165618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.150 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69547 -39.88646 -38.32136 -37.36780 -36.31657 -36.01538 -34.07857 -32.37710 -31.74023 -30.64856 -28.39620 -27.89516 -27.24016 -25.03363 -24.02539 -23.29812 -22.60606 -21.60733 -20.53470 -19.56143 -18.43039 -17.74524 -17.22406 -16.74054 -16.53601 -16.31485 -15.95018 -15.70940 -15.39892 -15.21363 -15.06075 -14.84815 -14.74016 -14.44898 -14.22790 -13.92352 -13.66152 -13.37259 -13.24499 -13.18866 -13.09336 -12.87735 -12.77587 -12.71462 -12.34145 -12.19160 -12.15640 -12.10271 -11.99699 -11.92907 -11.75060 -11.68382 -11.15410 -10.99449 -10.66631 -10.02752 -9.84424 -9.54788 -9.31359 -8.03408 -5.37832 0.23578 0.32430 1.27114 1.36744 1.42236 1.49522 1.72155 2.17618 2.48353 2.75754 3.27526 3.39829 3.55135 3.68880 3.85779 3.93190 4.00928 4.03333 4.06447 4.13517 4.20222 4.42106 4.50416 4.51906 4.68202 4.69184 4.72816 4.75821 4.80406 4.84452 4.89447 4.92954 5.01534 5.02298 5.08897 5.19185 5.25381 5.29191 5.35634 5.40445 5.45781 5.50009 5.50933 5.74284 5.91043 6.20062 6.59417 7.06905 7.31265 7.81498 8.02972 9.18224 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.024321 B = 0.002317 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.994550 B =12082.512741 C =12463.570743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.087 0.913 4 C 0.160 3.840 5 N -0.753 5.753 6 C -0.238 4.238 7 H 0.051 0.949 8 C -0.068 4.068 9 N -0.985 5.985 10 Si 0.960 3.040 11 H -0.277 1.277 12 H -0.296 1.296 13 H -0.245 1.245 14 C 0.141 3.859 15 N -0.713 5.713 16 C 0.520 3.480 17 O -0.565 6.565 18 C -0.038 4.038 19 C -0.143 4.143 20 C -0.155 4.155 21 C -0.072 4.072 22 C -0.109 4.109 23 C -0.119 4.119 24 C -0.110 4.110 25 C -0.132 4.132 26 C -0.029 4.029 27 Cl -0.077 7.077 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.023 0.977 33 H 0.369 0.631 34 H 0.258 0.742 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.412 0.588 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.158 0.842 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.959 4.687 36.542 37.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.116 4.116 3 H 0.105 0.895 4 C 0.033 3.967 5 N -0.399 5.399 6 C -0.369 4.369 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.203 1.203 12 H -0.222 1.222 13 H -0.169 1.169 14 C 0.016 3.984 15 N -0.366 5.366 16 C 0.306 3.694 17 O -0.443 6.443 18 C -0.041 4.041 19 C -0.200 4.200 20 C -0.213 4.213 21 C -0.073 4.073 22 C -0.127 4.127 23 C -0.137 4.137 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.055 4.055 27 Cl -0.048 7.048 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.041 0.959 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.249 0.751 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.175 0.825 45 H 0.175 0.825 46 H 0.173 0.827 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.307 3.839 36.360 36.815 hybrid contribution 0.060 0.796 -1.151 1.401 sum -4.247 4.635 35.209 35.766 Atomic orbital electron populations 1.21791 0.93433 1.02322 1.02163 1.21388 0.97518 1.00325 0.92400 0.89508 1.20693 0.96774 0.94211 0.85047 1.42615 1.67587 1.27883 1.01843 1.19027 1.28080 1.05750 0.84065 0.93047 1.25604 1.02677 1.03097 0.94515 1.69906 1.53388 1.42311 0.97974 0.85343 0.78805 0.79433 0.77804 1.20324 1.22249 1.16879 1.21048 0.99163 0.95036 0.83145 1.45812 1.57857 1.28066 1.04844 1.20745 0.78392 0.85246 0.85002 1.90721 1.40509 1.26107 1.86980 1.19727 0.99459 0.95889 0.89009 1.22022 0.89577 1.03352 1.05046 1.22200 1.02213 0.92495 1.04358 1.19457 0.91384 1.00032 0.96448 1.21464 1.00604 0.97427 0.93214 1.21611 0.96150 0.97872 0.98054 1.21464 0.93310 0.98912 0.99136 1.21276 1.01553 0.99023 0.93191 1.20986 0.90717 1.02210 0.91606 1.98341 1.61888 1.88022 1.56555 0.93400 0.92865 0.90036 0.96162 0.95861 0.79718 0.93294 0.92873 0.92091 0.75090 0.91871 0.90042 0.88681 0.89754 0.92095 0.90107 0.82468 0.82498 0.82729 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.94 71.98 0.64 -2.69 16 2 C -0.10 -2.60 2.46 -10.79 -0.03 -2.63 16 3 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 4 C 0.16 6.05 5.65 86.38 0.49 6.54 16 5 N -0.75 -34.97 5.13 -343.44 -1.76 -36.73 16 6 C -0.24 -13.84 10.47 84.03 0.88 -12.96 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 9 N -0.99 -63.96 13.97 21.65 0.30 -63.65 16 10 Si 0.96 44.90 27.74 68.60 1.90 46.80 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 13 H -0.24 -10.01 6.52 99.48 0.65 -9.36 16 14 C 0.14 3.58 5.06 86.38 0.44 4.02 16 15 N -0.71 -14.38 5.07 -463.07 -2.35 -16.72 16 16 C 0.52 12.06 5.38 87.66 0.47 12.53 16 17 O -0.57 -18.01 13.84 -3.02 -0.04 -18.05 16 18 C -0.04 -0.61 0.60 -53.67 -0.03 -0.64 16 19 C -0.14 -1.39 7.03 71.98 0.51 -0.88 16 20 C -0.16 -2.16 8.12 71.98 0.58 -1.58 16 21 C -0.07 -1.34 4.38 -19.84 -0.09 -1.43 16 22 C -0.11 -1.49 8.97 22.26 0.20 -1.30 16 23 C -0.12 -1.38 10.05 22.27 0.22 -1.15 16 24 C -0.11 -1.45 10.05 22.26 0.22 -1.22 16 25 C -0.13 -2.39 9.83 22.29 0.22 -2.17 16 26 C -0.03 -0.62 5.46 22.33 0.12 -0.50 16 27 Cl -0.08 -1.90 22.79 -2.72 -0.06 -1.96 16 28 H 0.05 1.31 7.18 -2.39 -0.02 1.30 16 29 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 1.35 7.18 -2.39 -0.02 1.33 16 31 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.37 15.87 4.71 -92.71 -0.44 15.43 16 34 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 35 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.41 5.86 6.49 -92.71 -0.60 5.25 16 38 H 0.06 0.68 7.51 -2.39 -0.02 0.67 16 39 H 0.08 0.58 7.57 -2.39 -0.02 0.56 16 40 H 0.09 0.53 7.51 -2.38 -0.02 0.51 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 1.10 4.98 -2.39 -0.01 1.09 16 43 H 0.08 0.85 7.56 -2.39 -0.02 0.84 16 44 H 0.16 1.32 5.89 -2.91 -0.02 1.30 16 45 H 0.16 0.84 8.06 -2.91 -0.02 0.81 16 46 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 47 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -77.76 381.36 3.20 -74.57 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.11 Total: 25.37 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 5.32 Total: -9.63 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -3.81 Total: -117.11 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.04 Total: -18.05 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.80 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.06 Total: -1.96 kcal Total: -77.76 3.20 -74.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753638122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.489 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds