Wall clock time and date at job start Tue Mar 31 2020 20:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46855 * 2 1 4 4 C 1.52997 * 109.47092 * 239.99781 * 2 1 3 5 5 C 1.50706 * 109.47005 * 65.00085 * 4 2 1 6 6 O 1.21282 * 119.99943 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00232 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47452 * 175.89874 * 8 7 5 10 10 N 1.46498 * 109.53983 * 305.05474 * 9 8 7 11 11 C 1.36933 * 120.00098 * 300.69217 * 10 9 8 12 12 H 1.08004 * 120.00238 * 354.08078 * 11 10 9 13 13 C 1.38812 * 120.00110 * 174.08047 * 11 10 9 14 14 N 1.31618 * 119.99989 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00127 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46952 * 90.00039 * 15 13 11 17 17 H 1.48499 * 109.47041 * 210.00258 * 15 13 11 18 18 H 1.48498 * 109.46762 * 330.00270 * 15 13 11 19 19 C 1.53171 * 109.54325 * 184.87634 * 9 8 7 20 20 C 1.53107 * 109.15623 * 183.23733 * 19 9 8 21 21 O 1.42898 * 109.48511 * 57.47858 * 20 19 9 22 22 C 1.42909 * 114.09832 * 298.88722 * 21 20 19 23 23 C 1.53096 * 109.41427 * 61.15962 * 22 21 20 24 24 C 1.52996 * 109.47003 * 120.00069 * 2 1 3 25 25 F 1.39908 * 109.47077 * 180.02562 * 24 2 1 26 26 F 1.39907 * 109.47213 * 299.99793 * 24 2 1 27 27 F 1.39899 * 109.47288 * 60.00069 * 24 2 1 28 28 H 1.08999 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47147 * 299.99862 * 1 2 3 30 30 H 1.08995 * 109.47207 * 60.00051 * 1 2 3 31 31 H 1.09000 * 109.47607 * 305.00258 * 4 2 1 32 32 H 1.09002 * 109.47089 * 184.99924 * 4 2 1 33 33 H 0.96999 * 120.00025 * 359.97438 * 7 5 4 34 34 H 1.09008 * 109.46700 * 295.89743 * 8 7 5 35 35 H 1.09000 * 109.47213 * 55.89297 * 8 7 5 36 36 H 0.97000 * 119.99812 * 120.69276 * 10 9 8 37 37 H 0.96998 * 119.99968 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.52768 * 303.06061 * 19 9 8 39 39 H 1.09004 * 109.52189 * 63.24842 * 19 9 8 40 40 H 1.09000 * 109.40580 * 297.49397 * 20 19 9 41 41 H 1.09004 * 109.48849 * 177.50948 * 20 19 9 42 42 H 1.08998 * 109.47811 * 301.18093 * 22 21 20 43 43 H 1.08995 * 109.48812 * 181.14444 * 22 21 20 44 44 H 1.08992 * 109.52112 * 182.48726 * 23 22 21 45 45 H 1.08994 * 109.57421 * 62.32783 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.5974 0.3649 -4.8933 9 6 2.1932 -0.3009 -6.1353 10 7 3.6430 -0.4334 -5.9723 11 6 4.4150 0.6809 -5.7788 12 1 3.9705 1.6633 -5.8414 13 6 5.7687 0.5480 -5.5020 14 7 6.3103 -0.6491 -5.4251 15 14 6.8219 2.0683 -5.2387 16 1 6.8169 2.4306 -3.7987 17 1 8.2137 1.7876 -5.6738 18 1 6.2722 3.1951 -6.0346 19 6 1.8923 0.5547 -7.3696 20 6 2.4214 -0.1588 -8.6166 21 8 1.8249 -1.4537 -8.7140 22 6 2.1130 -2.3134 -7.6094 23 6 1.5697 -1.6876 -6.3222 24 6 2.0400 -0.7212 1.2492 25 9 3.4391 -0.7207 1.2495 26 9 1.5737 -0.0617 2.3915 27 9 1.5737 -2.0402 1.2492 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7995 -1.2055 33 1 2.4883 -1.2158 -3.7908 34 1 0.5106 0.3818 -4.9761 35 1 1.9715 1.3856 -4.8134 36 1 4.0562 -1.3105 -6.0015 37 1 7.2563 -0.7419 -5.2321 38 1 0.8154 0.6958 -7.4614 39 1 2.3803 1.5242 -7.2685 40 1 3.5040 -0.2618 -8.5431 41 1 2.1711 0.4243 -9.5029 42 1 3.1916 -2.4446 -7.5227 43 1 1.6406 -3.2824 -7.7700 44 1 1.8271 -2.3202 -5.4728 45 1 0.4860 -1.5934 -6.3911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754739595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:23 Heat of formation + Delta-G solvation = -240.453161 kcal Electronic energy + Delta-G solvation = -31324.174415 eV Core-core repulsion = 26540.406968 eV Total energy + Delta-G solvation = -4783.767446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.18174 -47.66416 -47.63886 -39.87151 -39.00928 -36.06133 -34.93550 -33.51894 -32.25899 -30.71418 -29.23517 -28.69119 -26.57781 -26.02694 -24.12806 -23.12549 -22.33812 -21.36475 -19.98715 -18.79230 -18.55776 -18.37380 -17.59736 -17.29572 -16.40605 -15.78030 -15.71289 -15.51356 -15.37698 -14.70291 -14.61222 -14.51209 -14.36809 -14.08384 -13.96855 -13.88806 -13.80819 -13.75428 -13.56800 -13.27347 -12.97475 -12.73422 -12.58663 -12.17344 -12.01809 -11.82391 -11.52355 -11.43657 -11.35751 -11.28543 -10.96636 -10.94589 -10.85734 -10.39410 -10.09441 -9.86295 -9.76795 -9.54989 -9.17399 -8.89215 -8.53720 -7.15695 -5.92147 -3.22733 2.64442 2.91946 3.34972 3.41369 3.42572 3.44033 3.78690 3.99047 4.04902 4.31506 4.46822 4.60815 4.78807 5.01646 5.11274 5.18225 5.23428 5.29867 5.40643 5.48204 5.49258 5.51562 5.58734 5.69153 5.70642 5.81783 5.93436 6.01680 6.05589 6.12926 6.16838 6.23850 6.33534 6.48710 6.50672 6.65996 6.72149 6.93771 7.59397 7.65037 7.92110 8.24943 8.56166 9.37989 9.87772 10.24336 11.29473 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.003702 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.858311 B = 7561.136509 C = 9050.797971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.145 4.145 5 C 0.518 3.482 6 O -0.553 6.553 7 N -0.695 5.695 8 C 0.120 3.880 9 C 0.188 3.812 10 N -0.712 5.712 11 C -0.237 4.237 12 H 0.070 0.930 13 C -0.005 4.005 14 N -0.929 5.929 15 Si 0.901 3.099 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.282 1.282 19 C -0.154 4.154 20 C 0.070 3.930 21 O -0.393 6.393 22 C 0.066 3.934 23 C -0.151 4.151 24 C 0.452 3.548 25 F -0.182 7.182 26 F -0.184 7.184 27 F -0.184 7.184 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.403 0.597 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.385 0.615 37 H 0.256 0.744 38 H 0.055 0.945 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.026 -3.535 6.346 13.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 H 0.140 0.860 4 C -0.185 4.185 5 C 0.304 3.696 6 O -0.433 6.433 7 N -0.344 5.344 8 C -0.006 4.006 9 C 0.096 3.904 10 N -0.354 5.354 11 C -0.367 4.367 12 H 0.088 0.912 13 C -0.201 4.201 14 N -0.577 5.577 15 Si 0.732 3.268 16 H -0.217 1.217 17 H -0.218 1.218 18 H -0.208 1.208 19 C -0.195 4.195 20 C -0.007 4.007 21 O -0.312 6.312 22 C -0.011 4.011 23 C -0.189 4.189 24 C 0.398 3.602 25 F -0.164 7.164 26 F -0.166 7.166 27 F -0.165 7.165 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.239 0.761 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.219 0.781 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.468 -2.729 6.305 13.369 hybrid contribution 1.529 0.201 0.714 1.699 sum -9.940 -2.528 7.019 12.428 Atomic orbital electron populations 1.21993 0.91109 1.03167 1.05101 1.22146 1.00117 1.01776 0.89523 0.85983 1.21692 1.04317 1.00462 0.92032 1.20025 0.79624 0.85487 0.84503 1.90636 1.41306 1.24689 1.86690 1.45682 1.55892 1.27635 1.05235 1.21799 0.97276 0.96607 0.84953 1.19842 0.86433 0.92442 0.91652 1.42474 0.99083 1.07462 1.86426 1.19040 0.90185 0.86952 1.40565 0.91244 1.24683 0.97057 0.96266 1.02107 1.69633 1.12104 1.20494 1.55459 0.86294 0.80042 0.82514 0.77948 1.21732 1.21820 1.20761 1.22483 0.99882 1.00725 0.96367 1.22447 0.98390 0.82940 0.96893 1.87806 1.74746 1.25161 1.43463 1.22462 1.00279 0.92584 0.85792 1.22357 1.00585 0.97371 0.98633 1.20704 0.75529 0.77656 0.86291 1.93203 1.29972 1.96398 1.96787 1.93165 1.88518 1.80788 1.54096 1.93158 1.88467 1.38078 1.96836 0.91970 0.91679 0.88230 0.87941 0.87435 0.76143 0.93044 0.91273 0.78053 0.93435 0.92582 0.90514 0.91471 0.90319 0.92307 0.89992 0.91243 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.69 37.16 0.32 -1.36 16 2 C -0.12 -1.35 2.01 -90.62 -0.18 -1.53 16 3 H 0.12 1.50 7.96 -51.93 -0.41 1.09 16 4 C -0.14 -1.76 4.93 -27.88 -0.14 -1.90 16 5 C 0.52 7.98 7.55 -10.98 -0.08 7.90 16 6 O -0.55 -9.91 13.97 5.56 0.08 -9.83 16 7 N -0.70 -10.88 5.16 -60.29 -0.31 -11.19 16 8 C 0.12 2.00 4.32 -4.04 -0.02 1.98 16 9 C 0.19 3.13 0.41 -131.64 -0.05 3.07 16 10 N -0.71 -14.56 3.77 -47.06 -0.18 -14.73 16 11 C -0.24 -5.68 8.70 -15.06 -0.13 -5.81 16 12 H 0.07 1.69 6.75 -52.48 -0.35 1.34 16 13 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 14 N -0.93 -25.33 13.07 55.49 0.73 -24.61 16 15 Si 0.90 21.29 29.55 -169.99 -5.02 16.27 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 C -0.15 -2.51 4.83 -26.59 -0.13 -2.63 16 20 C 0.07 1.14 6.68 37.21 0.25 1.39 16 21 O -0.39 -6.46 10.77 -35.23 -0.38 -6.84 16 22 C 0.07 0.97 6.67 37.21 0.25 1.22 16 23 C -0.15 -2.14 4.80 -26.59 -0.13 -2.26 16 24 C 0.45 5.30 2.69 37.16 0.10 5.40 16 25 F -0.18 -2.36 16.71 2.25 0.04 -2.33 16 26 F -0.18 -2.20 16.80 2.25 0.04 -2.16 16 27 F -0.18 -2.13 16.37 2.25 0.04 -2.10 16 28 H 0.06 0.60 7.80 -51.93 -0.41 0.19 16 29 H 0.06 0.64 7.80 -51.93 -0.41 0.23 16 30 H 0.10 1.25 5.95 -51.93 -0.31 0.94 16 31 H 0.10 1.03 7.94 -51.93 -0.41 0.62 16 32 H 0.11 1.34 7.66 -51.93 -0.40 0.94 16 33 H 0.40 6.08 7.31 -40.82 -0.30 5.79 16 34 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.07 1.34 7.54 -51.93 -0.39 0.95 16 36 H 0.38 8.49 6.72 -40.82 -0.27 8.22 16 37 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.34 7.12 -51.93 -0.37 0.97 16 40 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.96 7.09 -51.93 -0.37 0.60 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.07 0.91 7.21 -51.93 -0.37 0.54 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 366.89 15.07 5.53 5.53 Total: -1.00 -27.75 366.89 -5.91 -33.66 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -6.42 Total: 13.08 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: -0.04 Total: 5.24 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.24 Total: -50.54 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.30 Total: -16.67 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -27.75 -5.91 -33.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754739595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.790 kcal (2) G-P(sol) polarization free energy of solvation -27.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds