Wall clock time and date at job start Tue Mar 31 2020 20:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46855 * 2 1 4 4 C 1.52997 * 109.47092 * 239.99781 * 2 1 3 5 5 C 1.50706 * 109.47005 * 65.00085 * 4 2 1 6 6 O 1.21282 * 119.99943 * 359.97438 * 5 4 2 7 7 N 1.34775 * 120.00062 * 180.02562 * 5 4 2 8 8 C 1.46501 * 120.00232 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47452 * 175.89874 * 8 7 5 10 10 N 1.46498 * 109.53983 * 305.05474 * 9 8 7 11 11 C 1.36933 * 120.00098 * 300.69217 * 10 9 8 12 12 H 1.08004 * 120.00238 * 354.08078 * 11 10 9 13 13 C 1.38812 * 120.00110 * 174.08047 * 11 10 9 14 14 N 1.31618 * 119.99989 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 120.00127 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46952 * 90.00039 * 15 13 11 17 17 H 1.48499 * 109.47041 * 210.00258 * 15 13 11 18 18 H 1.48498 * 109.46762 * 330.00270 * 15 13 11 19 19 C 1.53171 * 109.54325 * 184.87634 * 9 8 7 20 20 C 1.53107 * 109.15623 * 183.23733 * 19 9 8 21 21 O 1.42898 * 109.48511 * 57.47858 * 20 19 9 22 22 C 1.42909 * 114.09832 * 298.88722 * 21 20 19 23 23 C 1.53096 * 109.41427 * 61.15962 * 22 21 20 24 24 C 1.52996 * 109.47003 * 120.00069 * 2 1 3 25 25 F 1.39908 * 109.47077 * 180.02562 * 24 2 1 26 26 F 1.39907 * 109.47213 * 299.99793 * 24 2 1 27 27 F 1.39899 * 109.47288 * 60.00069 * 24 2 1 28 28 H 1.08999 * 109.46855 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47147 * 299.99862 * 1 2 3 30 30 H 1.08995 * 109.47207 * 60.00051 * 1 2 3 31 31 H 1.09000 * 109.47607 * 305.00258 * 4 2 1 32 32 H 1.09002 * 109.47089 * 184.99924 * 4 2 1 33 33 H 0.96999 * 120.00025 * 359.97438 * 7 5 4 34 34 H 1.09008 * 109.46700 * 295.89743 * 8 7 5 35 35 H 1.09000 * 109.47213 * 55.89297 * 8 7 5 36 36 H 0.97000 * 119.99812 * 120.69276 * 10 9 8 37 37 H 0.96998 * 119.99968 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.52768 * 303.06061 * 19 9 8 39 39 H 1.09004 * 109.52189 * 63.24842 * 19 9 8 40 40 H 1.09000 * 109.40580 * 297.49397 * 20 19 9 41 41 H 1.09004 * 109.48849 * 177.50948 * 20 19 9 42 42 H 1.08998 * 109.47811 * 301.18093 * 22 21 20 43 43 H 1.08995 * 109.48812 * 181.14444 * 22 21 20 44 44 H 1.08992 * 109.52112 * 182.48726 * 23 22 21 45 45 H 1.08994 * 109.57421 * 62.32783 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 8 1.0109 1.0869 -2.3633 7 7 1.9844 -0.3919 -3.7002 8 6 1.5974 0.3649 -4.8933 9 6 2.1932 -0.3009 -6.1353 10 7 3.6430 -0.4334 -5.9723 11 6 4.4150 0.6809 -5.7788 12 1 3.9705 1.6633 -5.8414 13 6 5.7687 0.5480 -5.5020 14 7 6.3103 -0.6491 -5.4251 15 14 6.8219 2.0683 -5.2387 16 1 6.8169 2.4306 -3.7987 17 1 8.2137 1.7876 -5.6738 18 1 6.2722 3.1951 -6.0346 19 6 1.8923 0.5547 -7.3696 20 6 2.4214 -0.1588 -8.6166 21 8 1.8249 -1.4537 -8.7140 22 6 2.1130 -2.3134 -7.6094 23 6 1.5697 -1.6876 -6.3222 24 6 2.0400 -0.7212 1.2492 25 9 3.4391 -0.7207 1.2495 26 9 1.5737 -0.0617 2.3915 27 9 1.5737 -2.0402 1.2492 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7995 -1.2055 33 1 2.4883 -1.2158 -3.7908 34 1 0.5106 0.3818 -4.9761 35 1 1.9715 1.3856 -4.8134 36 1 4.0562 -1.3105 -6.0015 37 1 7.2563 -0.7419 -5.2321 38 1 0.8154 0.6958 -7.4614 39 1 2.3803 1.5242 -7.2685 40 1 3.5040 -0.2618 -8.5431 41 1 2.1711 0.4243 -9.5029 42 1 3.1916 -2.4446 -7.5227 43 1 1.6406 -3.2824 -7.7700 44 1 1.8271 -2.3202 -5.4728 45 1 0.4860 -1.5934 -6.3911 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754739595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:22 Heat of formation + Delta-G solvation = -257.814460 kcal Electronic energy + Delta-G solvation = -31324.927257 eV Core-core repulsion = 26540.406968 eV Total energy + Delta-G solvation = -4784.520289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.13573 -48.62457 -48.59036 -41.16504 -40.28419 -37.39973 -36.01810 -35.06020 -33.85452 -31.96642 -30.94377 -29.79086 -27.65073 -27.11344 -25.90970 -24.43705 -23.59128 -22.43736 -21.19052 -20.12816 -19.61355 -19.36907 -19.07359 -18.59131 -17.58913 -17.16074 -16.99313 -16.68301 -16.63011 -16.18490 -15.89071 -15.64006 -15.54843 -15.36912 -15.26885 -15.04013 -14.89870 -14.76271 -14.72007 -14.35603 -14.25946 -13.92165 -13.79906 -13.64479 -13.17908 -13.15595 -12.89116 -12.84183 -12.67716 -12.37706 -12.31980 -12.26301 -12.22651 -12.08865 -11.70890 -11.47790 -11.11606 -10.97494 -10.76881 -10.31399 -9.86337 -8.96264 -7.90984 -5.16433 1.43750 1.47981 1.51685 1.66996 1.69931 2.31423 2.56183 2.81943 3.03190 3.05328 3.09147 3.43013 3.63381 3.77067 3.85582 3.89279 3.95884 4.05105 4.16791 4.23641 4.25950 4.49014 4.53095 4.55484 4.63952 4.77451 4.79304 4.84112 4.86461 4.90779 4.93643 5.05994 5.12518 5.23219 5.26799 5.30268 5.36084 5.60011 5.66666 6.31187 6.38116 6.67069 7.32450 7.41098 8.10345 8.36681 9.31024 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.011061 B = 0.003702 C = 0.003093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.858311 B = 7561.136509 C = 9050.797971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 H 0.112 0.888 4 C -0.139 4.139 5 C 0.515 3.485 6 O -0.580 6.580 7 N -0.696 5.696 8 C 0.127 3.873 9 C 0.185 3.815 10 N -0.712 5.712 11 C -0.210 4.210 12 H 0.065 0.935 13 C -0.059 4.059 14 N -0.958 5.958 15 Si 0.943 3.057 16 H -0.298 1.298 17 H -0.300 1.300 18 H -0.277 1.277 19 C -0.152 4.152 20 C 0.074 3.926 21 O -0.397 6.397 22 C 0.063 3.937 23 C -0.143 4.143 24 C 0.458 3.542 25 F -0.190 7.190 26 F -0.185 7.185 27 F -0.180 7.180 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.129 0.871 32 H 0.106 0.894 33 H 0.407 0.593 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.377 0.623 37 H 0.247 0.753 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.035 0.965 41 H 0.098 0.902 42 H 0.037 0.963 43 H 0.112 0.888 44 H 0.082 0.918 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.928 -4.358 6.550 15.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 H 0.130 0.870 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.461 6.461 7 N -0.345 5.345 8 C 0.001 3.999 9 C 0.095 3.905 10 N -0.353 5.353 11 C -0.342 4.342 12 H 0.083 0.917 13 C -0.252 4.252 14 N -0.608 5.608 15 Si 0.776 3.224 16 H -0.226 1.226 17 H -0.227 1.227 18 H -0.202 1.202 19 C -0.192 4.192 20 C -0.002 4.002 21 O -0.317 6.317 22 C -0.013 4.013 23 C -0.180 4.180 24 C 0.404 3.596 25 F -0.172 7.172 26 F -0.166 7.166 27 F -0.162 7.162 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.147 0.853 32 H 0.124 0.876 33 H 0.243 0.757 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.211 0.789 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.117 0.883 42 H 0.055 0.945 43 H 0.130 0.870 44 H 0.101 0.899 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.408 -3.542 6.501 15.316 hybrid contribution 2.010 0.473 0.622 2.157 sum -11.398 -3.069 7.123 13.787 Atomic orbital electron populations 1.21935 0.90205 1.03988 1.04671 1.22104 1.00810 1.01167 0.89256 0.86989 1.21683 1.04317 1.01290 0.90548 1.20532 0.78875 0.85265 0.85120 1.90630 1.42473 1.25916 1.87090 1.45700 1.55970 1.27650 1.05203 1.21637 0.98039 0.94966 0.85240 1.20057 0.84211 0.94528 0.91751 1.42496 1.00728 1.06042 1.86019 1.19171 0.90159 0.87781 1.37077 0.91734 1.25134 0.98285 0.97615 1.04129 1.69729 1.11580 1.21502 1.58036 0.85590 0.78694 0.80949 0.77209 1.22586 1.22736 1.20240 1.22445 1.01126 0.99606 0.95986 1.22372 0.96477 0.83514 0.97856 1.87808 1.74458 1.25082 1.44303 1.22594 0.99371 0.93683 0.85690 1.22312 1.01406 0.95495 0.98835 1.20609 0.75074 0.77706 0.86169 1.93191 1.30727 1.96443 1.96817 1.93166 1.88468 1.80837 1.54124 1.93166 1.88361 1.37824 1.96820 0.90515 0.90801 0.89908 0.85264 0.87623 0.75690 0.91374 0.94473 0.78884 0.94375 0.90278 0.92252 0.94666 0.88349 0.94506 0.87018 0.89935 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.69 71.98 0.63 -2.35 16 2 C -0.11 -2.48 2.01 -10.79 -0.02 -2.50 16 3 H 0.11 2.69 7.96 -2.39 -0.02 2.68 16 4 C -0.14 -3.14 4.93 29.85 0.15 -2.99 16 5 C 0.52 15.25 7.55 87.66 0.66 15.92 16 6 O -0.58 -20.35 13.97 -3.03 -0.04 -20.39 16 7 N -0.70 -20.84 5.16 -463.04 -2.39 -23.23 16 8 C 0.13 4.09 4.32 86.38 0.37 4.46 16 9 C 0.19 5.88 0.41 3.72 0.00 5.88 16 10 N -0.71 -28.89 3.77 -302.81 -1.14 -30.03 16 11 C -0.21 -10.11 8.70 84.03 0.73 -9.38 16 12 H 0.06 3.16 6.75 -2.91 -0.02 3.14 16 13 C -0.06 -3.07 5.50 84.86 0.47 -2.60 16 14 N -0.96 -53.03 13.07 21.65 0.28 -52.75 16 15 Si 0.94 44.40 29.55 68.60 2.03 46.42 16 16 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 17 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 19 C -0.15 -4.70 4.83 30.69 0.15 -4.55 16 20 C 0.07 2.35 6.68 72.02 0.48 2.83 16 21 O -0.40 -12.21 10.77 -148.98 -1.60 -13.81 16 22 C 0.06 1.72 6.67 72.01 0.48 2.20 16 23 C -0.14 -3.62 4.80 30.69 0.15 -3.48 16 24 C 0.46 9.97 2.69 71.98 0.19 10.17 16 25 F -0.19 -4.71 16.71 44.97 0.75 -3.96 16 26 F -0.18 -4.11 16.80 44.97 0.76 -3.35 16 27 F -0.18 -3.76 16.37 44.97 0.74 -3.03 16 28 H 0.08 1.27 7.80 -2.39 -0.02 1.25 16 29 H 0.07 1.31 7.80 -2.39 -0.02 1.29 16 30 H 0.08 1.97 5.95 -2.39 -0.01 1.95 16 31 H 0.13 2.23 7.94 -2.39 -0.02 2.21 16 32 H 0.11 2.49 7.66 -2.39 -0.02 2.47 16 33 H 0.41 11.63 7.31 -92.71 -0.68 10.95 16 34 H 0.07 1.97 8.14 -2.38 -0.02 1.96 16 35 H 0.04 1.43 7.54 -2.39 -0.02 1.41 16 36 H 0.38 16.65 6.72 -92.71 -0.62 16.02 16 37 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.06 2.04 7.12 -2.39 -0.02 2.03 16 40 H 0.03 1.33 7.75 -2.39 -0.02 1.31 16 41 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.04 1.17 7.09 -2.39 -0.02 1.16 16 43 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 44 H 0.08 1.92 7.21 -2.39 -0.02 1.90 16 45 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -59.46 366.89 3.55 -55.91 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: -0.26 Total: 34.61 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: 4.44 Total: 13.61 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -3.25 Total: -106.01 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -1.65 Total: -34.21 kcal Atomic # 9 Polarization: -12.58 SS G_CDS: 2.24 Total: -10.34 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -59.46 3.55 -55.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754739595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.901 kcal (2) G-P(sol) polarization free energy of solvation -59.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -261.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds