Wall clock time and date at job start Tue Mar 31 2020 20:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46899 * 2 1 4 4 N 1.46502 * 109.46697 * 240.00406 * 2 1 3 5 5 C 1.36935 * 119.99915 * 84.99856 * 4 2 1 6 6 H 1.07996 * 120.00338 * 0.02562 * 5 4 2 7 7 C 1.38819 * 119.99732 * 179.97438 * 5 4 2 8 8 N 1.31623 * 119.99882 * 0.02562 * 7 5 4 9 9 Si 1.86793 * 120.00004 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46897 * 60.00114 * 9 7 5 11 11 H 1.48502 * 109.47244 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47361 * 300.00275 * 9 7 5 13 13 C 1.52995 * 109.47251 * 120.00524 * 2 1 3 14 14 H 1.08999 * 110.88773 * 55.45227 * 13 2 1 15 15 C 1.55159 * 111.00344 * 291.53043 * 13 2 1 16 16 C 1.54326 * 102.94150 * 206.42557 * 15 13 2 17 17 N 1.47019 * 107.27420 * 22.19182 * 16 15 13 18 18 C 1.34769 * 125.64953 * 181.02225 * 17 16 15 19 19 O 1.21290 * 119.99873 * 180.02562 * 18 17 16 20 20 C 1.50698 * 120.00209 * 0.04536 * 18 17 16 21 21 C 1.50699 * 109.47217 * 180.02562 * 20 18 17 22 22 C 1.38228 * 119.98962 * 100.00006 * 21 20 18 23 23 C 1.38183 * 120.05243 * 179.97438 * 22 21 20 24 24 C 1.38503 * 120.02428 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.01304 * 179.97438 * 24 23 22 26 26 C 1.38399 * 119.97430 * 359.97438 * 24 23 22 27 27 C 1.38444 * 119.94741 * 359.72745 * 26 24 23 28 28 F 1.35097 * 120.00890 * 180.27204 * 27 26 24 29 29 C 1.47425 * 108.69885 * 1.05933 * 17 16 15 30 30 H 1.09004 * 109.46918 * 305.24592 * 1 2 3 31 31 H 1.09005 * 109.46968 * 185.25024 * 1 2 3 32 32 H 1.08993 * 109.47417 * 65.24690 * 1 2 3 33 33 H 0.97003 * 119.99930 * 264.99629 * 4 2 1 34 34 H 0.96995 * 119.99901 * 180.02562 * 8 7 5 35 35 H 1.08998 * 110.72106 * 324.78825 * 15 13 2 36 36 H 1.09001 * 110.71880 * 88.06417 * 15 13 2 37 37 H 1.08998 * 109.88134 * 262.77144 * 16 15 13 38 38 H 1.09000 * 110.00672 * 141.68453 * 16 15 13 39 39 H 1.09002 * 109.46705 * 299.99815 * 20 18 17 40 40 H 1.08995 * 109.47228 * 59.99584 * 20 18 17 41 41 H 1.07995 * 119.97506 * 359.97425 * 22 21 20 42 42 H 1.08003 * 119.99232 * 179.97438 * 23 22 21 43 43 H 1.07997 * 120.02109 * 180.02562 * 26 24 23 44 44 H 1.09009 * 110.36601 * 217.02958 * 29 17 16 45 45 H 1.09001 * 110.46290 * 94.76043 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1490 -0.0073 -2.3758 6 1 1.8925 1.0406 -2.4241 7 6 2.6121 -0.6616 -3.5092 8 7 2.9251 -1.9387 -3.4501 9 14 2.7911 0.2705 -5.1180 10 1 3.7463 1.3929 -4.9361 11 1 3.2999 -0.6479 -6.1682 12 1 1.4689 0.8074 -5.5288 13 6 2.0401 -0.7213 1.2491 14 1 1.6251 -1.7272 1.3137 15 6 1.7243 0.0947 2.5304 16 6 2.8271 -0.3592 3.5099 17 7 3.9378 -0.8855 2.7031 18 6 5.0855 -1.3999 3.1874 19 8 5.9371 -1.8062 2.4252 20 6 5.3106 -1.4708 4.6758 21 6 6.6605 -2.0815 4.9512 22 6 7.7363 -1.2698 5.2587 23 6 8.9745 -1.8284 5.5120 24 6 9.1392 -3.2025 5.4574 25 9 10.3500 -3.7484 5.7046 26 6 8.0628 -4.0162 5.1495 27 6 6.8213 -3.4558 4.9020 28 9 5.7685 -4.2492 4.6068 29 6 3.5885 -0.7566 1.2767 30 1 -0.3633 0.5931 0.8393 31 1 -0.3633 -1.0234 0.0940 32 1 -0.3634 0.4303 -0.9332 33 1 2.2490 -1.6317 -1.1528 34 1 3.2491 -2.3957 -4.2419 35 1 1.7988 1.1643 2.3346 36 1 0.7372 -0.1600 2.9163 37 1 2.4423 -1.1404 4.1653 38 1 3.1696 0.4878 4.1044 39 1 5.2740 -0.4661 5.0969 40 1 4.5339 -2.0845 5.1319 41 1 7.6089 -0.1982 5.3011 42 1 9.8145 -1.1932 5.7519 43 1 8.1902 -5.0878 5.1072 44 1 3.9584 -1.6153 0.7164 45 1 3.9963 0.1673 0.8665 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754789572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:37 Heat of formation + Delta-G solvation = -111.930142 kcal Electronic energy + Delta-G solvation = -28875.437107 eV Core-core repulsion = 24528.012061 eV Total energy + Delta-G solvation = -4347.425045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.09973 -50.04996 -41.26618 -39.92456 -38.85584 -36.75598 -34.34843 -33.75755 -32.01146 -31.80017 -29.99267 -29.91944 -28.14284 -25.88940 -24.61892 -24.24964 -22.92707 -22.77805 -21.06283 -20.23232 -19.28250 -19.11417 -18.33704 -18.17376 -17.47951 -17.01251 -16.90751 -16.70739 -16.54046 -16.37369 -15.93267 -15.62006 -15.47594 -15.43624 -15.14354 -14.81399 -14.50525 -14.25091 -13.92063 -13.82314 -13.55852 -13.37759 -13.12837 -12.98011 -12.96429 -12.82080 -12.75166 -12.65900 -12.37658 -12.33215 -12.25727 -12.02508 -11.65723 -11.51396 -11.36212 -11.01711 -10.91446 -10.09428 -9.66910 -9.63765 -8.98562 -7.92209 -5.19867 -0.14094 -0.00682 1.45382 1.48543 1.54351 1.60462 1.93914 2.38960 2.56732 2.83862 3.34361 3.40664 3.45717 3.50732 3.55404 3.71707 3.86032 3.88721 3.91154 4.08977 4.21093 4.35593 4.42621 4.45997 4.49962 4.58658 4.66758 4.76022 4.77557 4.83088 4.88415 4.91355 4.93901 5.01788 5.03799 5.11973 5.16597 5.17432 5.27969 5.38378 5.43621 5.53557 5.67263 5.72883 6.29736 6.57039 7.14534 7.35221 8.13991 8.34437 9.31383 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014008 B = 0.002514 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.404783 B =11137.134409 C =12329.656909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 H 0.048 0.952 4 N -0.739 5.739 5 C -0.231 4.231 6 H 0.078 0.922 7 C -0.081 4.081 8 N -0.973 5.973 9 Si 0.969 3.031 10 H -0.279 1.279 11 H -0.301 1.301 12 H -0.275 1.275 13 C -0.094 4.094 14 H 0.072 0.928 15 C -0.113 4.113 16 C 0.095 3.905 17 N -0.618 5.618 18 C 0.516 3.484 19 O -0.592 6.592 20 C -0.085 4.085 21 C -0.121 4.121 22 C -0.047 4.047 23 C -0.156 4.156 24 C 0.114 3.886 25 F -0.137 7.137 26 C -0.203 4.203 27 C 0.120 3.880 28 F -0.142 7.142 29 C 0.126 3.874 30 H 0.082 0.918 31 H 0.041 0.959 32 H 0.032 0.968 33 H 0.368 0.632 34 H 0.248 0.752 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.154 0.846 40 H 0.125 0.875 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.152 0.848 44 H 0.029 0.971 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 4.957 28.154 28.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.070 3.930 3 H 0.066 0.934 4 N -0.379 5.379 5 C -0.363 4.363 6 H 0.096 0.904 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.798 3.202 10 H -0.205 1.205 11 H -0.227 1.227 12 H -0.201 1.201 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.151 4.151 16 C -0.027 4.027 17 N -0.351 5.351 18 C 0.306 3.694 19 O -0.473 6.473 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.064 4.064 23 C -0.175 4.175 24 C 0.095 3.905 25 F -0.116 7.116 26 C -0.223 4.223 27 C 0.101 3.899 28 F -0.121 7.121 29 C 0.003 3.997 30 H 0.100 0.900 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.199 0.801 34 H 0.056 0.944 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.171 0.829 40 H 0.143 0.857 41 H 0.196 0.804 42 H 0.188 0.812 43 H 0.170 0.830 44 H 0.048 0.952 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.306 4.821 27.683 28.428 hybrid contribution 0.468 -1.040 -1.884 2.203 sum 4.774 3.781 25.799 26.508 Atomic orbital electron populations 1.22274 0.96988 1.00977 1.01007 1.20454 0.93171 0.94792 0.84616 0.93408 1.42680 1.78478 1.10215 1.06516 1.19573 1.34330 0.94121 0.88274 0.90441 1.25545 1.03392 0.96828 1.01538 1.69827 1.52939 1.10378 1.29290 0.85272 0.78005 0.77258 0.79633 1.20540 1.22722 1.20148 1.22501 0.92357 1.00345 0.96241 0.90935 1.22720 0.99683 1.00576 0.92098 1.22444 0.85765 1.00329 0.94113 1.48706 1.17696 1.60901 1.07843 1.20976 0.80068 0.76386 0.91971 1.90745 1.45050 1.49910 1.61565 1.20641 0.95001 1.06353 0.90347 1.19725 0.97910 0.91179 1.03408 1.21178 0.89620 1.01635 0.94003 1.21525 1.00278 0.92528 1.03156 1.17493 0.79992 0.92222 1.00787 1.91515 1.41908 1.86512 1.91664 1.21129 0.91485 1.02457 1.07227 1.17428 0.83853 0.88624 1.00017 1.91490 1.55726 1.74093 1.90744 1.21893 0.96248 0.99715 0.81834 0.89968 0.94019 0.94927 0.80062 0.94368 0.89256 0.87066 0.88995 0.87763 0.82859 0.85745 0.80434 0.81162 0.83035 0.95195 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 9.29 71.98 0.67 -4.14 16 2 C 0.18 6.45 2.42 44.99 0.11 6.56 16 3 H 0.05 1.74 8.00 -2.39 -0.02 1.73 16 4 N -0.74 -36.94 4.76 -322.94 -1.54 -38.47 16 5 C -0.23 -12.82 9.93 84.04 0.83 -11.99 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 8 N -0.97 -61.85 13.06 21.65 0.28 -61.57 16 9 Si 0.97 47.31 29.55 68.60 2.03 49.33 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 11 H -0.30 -15.00 7.11 99.48 0.71 -14.29 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 C -0.09 -2.77 2.62 -9.40 -0.02 -2.79 16 14 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.11 -1.91 5.79 31.78 0.18 -1.73 16 16 C 0.09 1.39 6.49 86.73 0.56 1.95 16 17 N -0.62 -16.33 3.33 -811.80 -2.70 -19.03 16 18 C 0.52 14.71 7.84 87.66 0.69 15.39 16 19 O -0.59 -24.01 16.21 -3.06 -0.05 -24.06 16 20 C -0.08 -1.38 4.75 29.10 0.14 -1.24 16 21 C -0.12 -2.38 4.43 -19.82 -0.09 -2.46 16 22 C -0.05 -0.68 9.66 22.25 0.22 -0.46 16 23 C -0.16 -2.36 10.03 22.32 0.22 -2.14 16 24 C 0.11 2.26 7.30 22.37 0.16 2.42 16 25 F -0.14 -2.82 17.27 44.97 0.78 -2.04 16 26 C -0.20 -4.47 10.01 22.36 0.22 -4.25 16 27 C 0.12 2.89 7.14 22.37 0.16 3.05 16 28 F -0.14 -3.89 16.66 44.97 0.75 -3.15 16 29 C 0.13 4.45 6.03 86.85 0.52 4.98 16 30 H 0.08 1.86 7.75 -2.39 -0.02 1.84 16 31 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.37 20.43 7.80 -92.71 -0.72 19.71 16 34 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.09 1.38 7.98 -2.39 -0.02 1.37 16 36 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.15 1.09 8.00 -2.39 -0.02 1.07 16 40 H 0.12 1.60 7.94 -2.39 -0.02 1.58 16 41 H 0.18 1.28 8.03 -2.91 -0.02 1.26 16 42 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.15 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.03 1.34 8.04 -2.38 -0.02 1.32 16 45 H 0.05 1.98 8.03 -2.39 -0.02 1.96 16 Total: -1.00 -81.01 384.03 4.88 -76.13 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.28 Total: 24.01 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.05 Total: -1.15 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -3.95 Total: -119.07 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 1.53 Total: -5.19 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -81.01 4.88 -76.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.805 kcal (2) G-P(sol) polarization free energy of solvation -81.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds