Wall clock time and date at job start Tue Mar 31 2020 20:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46927 * 2 1 4 4 N 1.46505 * 109.46922 * 119.99847 * 2 1 3 5 5 C 1.36936 * 120.00058 * 275.00384 * 4 2 1 6 6 H 1.08004 * 120.00270 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99979 * 180.02562 * 5 4 2 8 8 N 1.31615 * 120.00313 * 179.97438 * 7 5 4 9 9 Si 1.86804 * 119.99815 * 359.97438 * 7 5 4 10 10 H 1.48493 * 109.47346 * 90.00120 * 9 7 5 11 11 H 1.48506 * 109.46878 * 210.00382 * 9 7 5 12 12 H 1.48510 * 109.47115 * 329.99814 * 9 7 5 13 13 C 1.52995 * 109.47386 * 239.99899 * 2 1 3 14 14 H 1.08997 * 110.88889 * 304.54816 * 13 2 1 15 15 C 1.55163 * 111.00375 * 68.46739 * 13 2 1 16 16 C 1.54326 * 103.02171 * 153.37880 * 15 13 2 17 17 N 1.47019 * 107.26871 * 338.14417 * 16 15 13 18 18 C 1.34773 * 125.65021 * 178.84966 * 17 16 15 19 19 O 1.21287 * 120.00139 * 179.69099 * 18 17 16 20 20 C 1.50701 * 119.99928 * 359.68658 * 18 17 16 21 21 C 1.50701 * 109.46910 * 179.97438 * 20 18 17 22 22 C 1.38228 * 119.99117 * 265.27674 * 21 20 18 23 23 C 1.38189 * 120.05377 * 180.27712 * 22 21 20 24 24 C 1.38494 * 120.02327 * 359.70180 * 23 22 21 25 25 F 1.35097 * 120.01256 * 180.02562 * 24 23 22 26 26 C 1.38399 * 119.97413 * 0.02562 * 24 23 22 27 27 C 1.38436 * 119.95028 * 359.97438 * 26 24 23 28 28 F 1.35104 * 120.01382 * 179.97438 * 27 26 24 29 29 C 1.47427 * 108.70180 * 358.58324 * 17 16 15 30 30 H 1.09001 * 109.46716 * 174.74579 * 1 2 3 31 31 H 1.08997 * 109.47158 * 294.74584 * 1 2 3 32 32 H 1.09003 * 109.46672 * 54.74901 * 1 2 3 33 33 H 0.96993 * 119.99456 * 95.00026 * 4 2 1 34 34 H 0.96998 * 120.00255 * 180.02562 * 8 7 5 35 35 H 1.09001 * 110.72071 * 271.94237 * 15 13 2 36 36 H 1.08998 * 110.71677 * 35.21053 * 15 13 2 37 37 H 1.08996 * 109.99304 * 218.66279 * 16 15 13 38 38 H 1.09011 * 109.77702 * 97.49685 * 16 15 13 39 39 H 1.08997 * 109.47008 * 60.00836 * 20 18 17 40 40 H 1.08993 * 109.47085 * 299.99855 * 20 18 17 41 41 H 1.08007 * 119.97470 * 359.97438 * 22 21 20 42 42 H 1.07997 * 119.99240 * 179.72530 * 23 22 21 43 43 H 1.08003 * 120.02706 * 179.97438 * 26 24 23 44 44 H 1.08996 * 110.37061 * 143.19557 * 29 17 16 45 45 H 1.09004 * 110.36642 * 265.41385 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1490 -0.0075 2.3758 6 1 1.8925 1.0405 2.4243 7 6 2.6122 -0.6617 3.5091 8 7 2.7383 -0.0051 4.6428 9 14 3.0565 -2.4742 3.4252 10 1 4.4890 -2.6164 3.0608 11 1 2.8174 -3.1042 4.7485 12 1 2.2161 -3.1429 2.3995 13 6 2.0401 -0.7212 -1.2492 14 1 1.6252 -1.7271 -1.3138 15 6 1.7243 0.0949 -2.5305 16 6 2.8294 -0.3538 -3.5098 17 7 3.9378 -0.8852 -2.7032 18 6 5.0855 -1.3996 -3.1875 19 8 5.9373 -1.8056 -2.4255 20 6 5.3106 -1.4703 -4.6759 21 6 6.6605 -2.0809 -4.9514 22 6 7.7594 -1.2665 -5.1512 23 6 8.9968 -1.8250 -5.4096 24 6 9.1384 -3.2016 -5.4624 25 9 10.3482 -3.7473 -5.7145 26 6 8.0399 -4.0181 -5.2569 27 6 6.8009 -3.4575 -4.9982 28 9 5.7276 -4.2533 -4.7979 29 6 3.5885 -0.7564 -1.2767 30 1 -0.3633 -1.0234 -0.0941 31 1 -0.3633 0.4302 0.9333 32 1 -0.3633 0.5932 -0.8393 33 1 2.2490 -1.6317 1.1526 34 1 3.0623 -0.4622 5.4346 35 1 0.7371 -0.1597 -2.9163 36 1 1.7987 1.1645 -2.3345 37 1 3.1736 0.4966 -4.0982 38 1 2.4444 -1.1319 -4.1690 39 1 5.2740 -0.4656 -5.0970 40 1 4.5339 -2.0841 -5.1320 41 1 7.6500 -0.1928 -5.1103 42 1 9.8538 -1.1877 -5.5699 43 1 8.1493 -5.0918 -5.2984 44 1 3.9584 -1.6151 -0.7165 45 1 3.9979 0.1674 -0.8678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754789573.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:42 Heat of formation + Delta-G solvation = -87.645773 kcal Electronic energy + Delta-G solvation = -28961.663236 eV Core-core repulsion = 24615.291240 eV Total energy + Delta-G solvation = -4346.371996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.31977 -49.27377 -40.31277 -39.14771 -37.77543 -35.37294 -33.13921 -32.41855 -31.16514 -30.80972 -29.04258 -28.81203 -27.30210 -23.90256 -23.59759 -23.48492 -22.15519 -21.36515 -19.88825 -19.29419 -18.52112 -17.69565 -17.59650 -17.16471 -16.51531 -16.21041 -16.02360 -15.83795 -15.57309 -15.11632 -14.82384 -14.72541 -14.38989 -14.20121 -14.05339 -13.75594 -13.28577 -13.03964 -12.84873 -12.62365 -12.46202 -12.35651 -12.24330 -12.13018 -12.02724 -11.79969 -11.72506 -11.69012 -11.01965 -10.86087 -10.64314 -10.60278 -10.27221 -10.01504 -9.90291 -9.57412 -9.40124 -8.95007 -8.92786 -8.62444 -7.27771 -5.76395 -3.12158 0.57101 0.67716 2.57870 2.80041 3.14992 3.40460 3.44134 3.49274 3.53991 4.03948 4.16042 4.19809 4.37505 4.47649 4.56791 4.61047 4.68812 4.78061 4.89118 5.02302 5.07833 5.19198 5.34309 5.42315 5.44740 5.45519 5.54608 5.57674 5.65387 5.67142 5.76345 5.80274 5.83104 5.95873 6.03809 6.16761 6.22786 6.27441 6.37977 6.40481 6.47329 6.74748 6.97317 7.49831 7.98776 8.12405 8.42552 9.20719 9.93642 10.12553 11.41907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.002711 C = 0.002436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.589923 B =10325.969130 C =11491.828187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.190 3.810 3 H 0.058 0.942 4 N -0.749 5.749 5 C -0.242 4.242 6 H 0.090 0.910 7 C 0.007 3.993 8 N -0.934 5.934 9 Si 0.880 3.120 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.107 4.107 14 H 0.080 0.920 15 C -0.123 4.123 16 C 0.099 3.901 17 N -0.619 5.619 18 C 0.526 3.474 19 O -0.531 6.531 20 C -0.097 4.097 21 C -0.109 4.109 22 C -0.048 4.048 23 C -0.162 4.162 24 C 0.128 3.872 25 F -0.133 7.133 26 C -0.192 4.192 27 C 0.146 3.854 28 F -0.127 7.127 29 C 0.118 3.882 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.361 0.639 34 H 0.259 0.741 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.078 0.922 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.309 -2.005 -27.897 28.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.080 3.920 3 H 0.076 0.924 4 N -0.392 5.392 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.189 4.189 8 N -0.582 5.582 9 Si 0.711 3.289 10 H -0.209 1.209 11 H -0.218 1.218 12 H -0.204 1.204 13 C -0.127 4.127 14 H 0.098 0.902 15 C -0.161 4.161 16 C -0.024 4.024 17 N -0.354 5.354 18 C 0.314 3.686 19 O -0.407 6.407 20 C -0.137 4.137 21 C -0.111 4.111 22 C -0.066 4.066 23 C -0.181 4.181 24 C 0.109 3.891 25 F -0.111 7.111 26 C -0.211 4.211 27 C 0.127 3.873 28 F -0.106 7.106 29 C -0.004 4.004 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.059 0.941 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.166 0.834 44 H 0.096 0.904 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.863 -2.131 -27.320 28.023 hybrid contribution 0.268 -1.656 0.151 1.684 sum 6.132 -3.787 -27.169 28.109 Atomic orbital electron populations 1.22415 0.98577 1.00542 1.00932 1.20135 0.92089 0.95432 0.84335 0.92386 1.42801 1.79829 1.09402 1.07157 1.19026 1.37053 0.95460 0.85668 0.89185 1.24644 1.01328 0.97372 0.95572 1.69691 1.52560 1.35599 1.00307 0.86619 0.78699 0.86854 0.76776 1.20926 1.21766 1.20366 1.22730 0.94238 1.00173 0.95535 0.90185 1.22664 0.97753 1.01018 0.94709 1.22097 0.87533 0.98238 0.94545 1.48589 1.16811 1.61131 1.08823 1.20005 0.80815 0.77714 0.90096 1.90768 1.42853 1.47426 1.59627 1.20568 0.95075 1.03632 0.94380 1.19422 0.96403 0.91564 1.03676 1.20749 0.90321 1.00311 0.95241 1.21164 0.99371 0.93045 1.04509 1.17291 0.80246 0.91348 1.00224 1.91531 1.41868 1.86309 1.91390 1.20986 0.91094 1.01781 1.07251 1.17078 0.83322 0.87615 0.99295 1.91534 1.53516 1.73443 1.92085 1.22277 0.94834 1.03143 0.80117 0.93754 0.92094 0.94080 0.80681 0.93061 0.89892 0.90101 0.91397 0.91537 0.87220 0.87580 0.83854 0.83848 0.83380 0.90400 0.90531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.29 37.16 0.35 -2.28 16 2 C 0.19 3.32 2.42 -67.93 -0.16 3.15 16 3 H 0.06 1.05 8.01 -51.93 -0.42 0.64 16 4 N -0.75 -17.02 4.56 -53.42 -0.24 -17.27 16 5 C -0.24 -6.67 10.41 -15.06 -0.16 -6.83 16 6 H 0.09 2.65 8.06 -52.48 -0.42 2.22 16 7 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 8 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 9 Si 0.88 22.53 27.74 -169.99 -4.71 17.81 16 10 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 12 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 13 C -0.11 -1.49 2.62 -88.47 -0.23 -1.73 16 14 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 15 C -0.12 -1.20 5.78 -24.89 -0.14 -1.35 16 16 C 0.10 0.88 6.49 -3.06 -0.02 0.86 16 17 N -0.62 -8.02 3.33 -170.52 -0.57 -8.58 16 18 C 0.53 7.26 7.84 -10.99 -0.09 7.17 16 19 O -0.53 -9.83 16.29 5.55 0.09 -9.74 16 20 C -0.10 -0.88 4.79 -29.03 -0.14 -1.01 16 21 C -0.11 -1.11 4.38 -104.54 -0.46 -1.56 16 22 C -0.05 -0.41 9.68 -39.60 -0.38 -0.79 16 23 C -0.16 -1.35 10.03 -39.50 -0.40 -1.75 16 24 C 0.13 1.25 7.30 -39.43 -0.29 0.96 16 25 F -0.13 -1.33 17.27 2.25 0.04 -1.29 16 26 C -0.19 -1.93 10.01 -39.45 -0.39 -2.33 16 27 C 0.15 1.64 7.24 -39.43 -0.29 1.36 16 28 F -0.13 -1.56 16.57 2.25 0.04 -1.52 16 29 C 0.12 1.87 6.03 -2.53 -0.02 1.85 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.04 0.52 7.75 -51.93 -0.40 0.12 16 33 H 0.36 8.28 5.66 -40.82 -0.23 8.05 16 34 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.77 7.98 -51.93 -0.41 0.35 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 39 H 0.11 0.64 8.05 -51.93 -0.42 0.22 16 40 H 0.11 0.81 7.79 -51.93 -0.40 0.41 16 41 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.15 1.26 8.06 -52.48 -0.42 0.84 16 44 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 45 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -34.64 380.96 -8.27 -42.91 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.52 Total: 4.71 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -2.91 Total: -4.17 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.04 Total: -54.45 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.74 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.08 Total: -2.81 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.71 Total: 17.81 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.64 -8.27 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754789573.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.736 kcal (2) G-P(sol) polarization free energy of solvation -34.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds