Wall clock time and date at job start Tue Mar 31 2020 20:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47077 * 2 1 4 4 C 1.52994 * 109.47210 * 240.00042 * 2 1 3 5 5 C 1.52998 * 109.47206 * 64.95993 * 4 2 1 6 6 F 1.39894 * 109.47285 * 53.58379 * 5 4 2 7 7 F 1.39898 * 109.47554 * 173.58634 * 5 4 2 8 8 F 1.39899 * 109.46905 * 293.58462 * 5 4 2 9 9 C 1.50698 * 109.46898 * 120.00096 * 2 1 3 10 10 O 1.21281 * 120.00146 * 120.00064 * 9 2 1 11 11 N 1.34780 * 120.00142 * 299.99626 * 9 2 1 12 12 C 1.46503 * 120.00199 * 185.08523 * 11 9 2 13 13 C 1.52993 * 109.49996 * 297.45679 * 12 11 9 14 14 O 1.42897 * 109.47063 * 304.12012 * 13 12 11 15 15 C 1.53047 * 109.49519 * 57.52143 * 12 11 9 16 16 C 1.53035 * 109.53787 * 58.61428 * 15 12 11 17 17 C 1.53191 * 109.33998 * 61.35256 * 16 15 12 18 18 N 1.46935 * 108.77221 * 305.41266 * 17 16 15 19 19 C 1.36933 * 120.60840 * 233.53753 * 18 17 16 20 20 H 1.08005 * 119.99830 * 32.27314 * 19 18 17 21 21 C 1.38809 * 120.00105 * 212.28231 * 19 18 17 22 22 N 1.31623 * 120.00263 * 9.37993 * 21 19 18 23 23 Si 1.86803 * 120.00129 * 189.38012 * 21 19 18 24 24 H 1.48501 * 109.47043 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47213 * 119.99902 * 23 21 19 26 26 H 1.48499 * 109.47134 * 239.99859 * 23 21 19 27 27 C 1.46930 * 118.76451 * 53.55264 * 18 17 16 28 28 H 1.09007 * 109.47251 * 49.62137 * 1 2 3 29 29 H 1.08998 * 109.47326 * 169.62351 * 1 2 3 30 30 H 1.09005 * 109.47411 * 289.62527 * 1 2 3 31 31 H 1.09000 * 109.47445 * 184.96100 * 4 2 1 32 32 H 1.08995 * 109.47592 * 304.95814 * 4 2 1 33 33 H 0.97001 * 120.00075 * 5.09151 * 11 9 2 34 34 H 1.09004 * 109.47514 * 64.11640 * 13 12 11 35 35 H 1.09000 * 109.47376 * 184.11717 * 13 12 11 36 36 H 0.96705 * 114.00465 * 179.97438 * 14 13 12 37 37 H 1.09001 * 109.45757 * 298.59821 * 15 12 11 38 38 H 1.08994 * 109.45956 * 178.64012 * 15 12 11 39 39 H 1.09000 * 109.49776 * 181.31423 * 16 15 12 40 40 H 1.08998 * 109.50388 * 301.38273 * 16 15 12 41 41 H 1.09003 * 109.58896 * 65.16364 * 17 16 15 42 42 H 1.08995 * 109.59086 * 185.59251 * 17 16 15 43 43 H 0.97000 * 120.00232 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.58567 * 186.63139 * 27 18 17 45 45 H 1.09000 * 109.70466 * 66.26676 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6344 0.0684 -2.4953 6 9 2.0671 1.3928 -2.3695 7 9 2.2228 -0.5091 -3.6255 8 9 0.2421 0.0436 -2.6304 9 6 2.0322 -0.7104 1.2304 10 8 2.7295 -1.6965 1.1192 11 7 1.7067 -0.2500 2.4546 12 6 2.2842 -0.8720 3.6487 13 6 1.8409 -2.3341 3.7280 14 8 0.4137 -2.4012 3.7044 15 6 3.8112 -0.8045 3.5720 16 6 4.2540 0.6560 3.4595 17 6 3.7983 1.4217 4.7056 18 7 2.3493 1.2406 4.8683 19 6 1.5207 2.3239 4.9908 20 1 1.7598 3.2467 4.4831 21 6 0.3736 2.2360 5.7674 22 7 0.1750 1.1826 6.5313 23 14 -0.8885 3.6126 5.7285 24 1 -0.4328 4.6758 4.7972 25 1 -2.1934 3.0750 5.2663 26 1 -1.0425 4.1817 7.0914 27 6 1.8062 -0.1243 4.8975 28 1 -0.3634 0.6658 -0.7829 29 1 -0.3634 -1.0108 -0.1851 30 1 -0.3634 0.3452 0.9680 31 1 3.1263 -0.7988 -1.2059 32 1 1.6060 -1.7200 -1.2948 33 1 1.0899 0.4933 2.5450 34 1 2.2445 -2.8829 2.8770 35 1 2.2102 -2.7761 4.6534 36 1 0.0613 -3.3005 3.7512 37 1 4.1556 -1.3567 2.6975 38 1 4.2398 -1.2457 4.4717 39 1 5.3403 0.7019 3.3814 40 1 3.8063 1.1048 2.5728 41 1 4.3154 1.0328 5.5829 42 1 4.0235 2.4814 4.5861 43 1 -0.6268 1.1210 7.0737 44 1 0.7169 -0.0841 4.9046 45 1 2.1588 -0.6412 5.7900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754855038.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:39 Heat of formation + Delta-G solvation = -247.614961 kcal Electronic energy + Delta-G solvation = -32355.297926 eV Core-core repulsion = 27571.219920 eV Total energy + Delta-G solvation = -4784.078005 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.10642 -48.59721 -48.56103 -41.53313 -39.19550 -37.34394 -35.92037 -35.35763 -34.15551 -32.00465 -31.45315 -29.74223 -27.31033 -26.60798 -25.85301 -24.06232 -23.74825 -22.22691 -21.12275 -20.07238 -19.58678 -19.51215 -18.75479 -18.48149 -18.12795 -17.58662 -16.86286 -16.39710 -16.37730 -15.82243 -15.70614 -15.51311 -15.37597 -15.19310 -15.03621 -14.91612 -14.76803 -14.71789 -14.62984 -14.43380 -14.10712 -13.95730 -13.77253 -13.46700 -13.17056 -12.97394 -12.81277 -12.75229 -12.62250 -12.51817 -12.36867 -12.24709 -12.14435 -11.92710 -11.66005 -11.46436 -11.18040 -11.00337 -10.54332 -10.31856 -9.77044 -8.58228 -7.82957 -5.35264 1.48437 1.51914 1.60330 1.72960 1.74858 2.31482 2.52742 2.90121 3.02969 3.11679 3.33151 3.37730 3.63744 3.69513 3.85730 3.89364 4.12821 4.15084 4.26738 4.33042 4.39357 4.51293 4.54481 4.64146 4.66961 4.80003 4.83388 4.86838 4.94218 4.97211 5.01073 5.14027 5.23143 5.24436 5.34739 5.50881 5.66750 5.78468 5.79459 6.45385 6.77858 6.95979 7.18959 7.35718 7.86967 8.41725 9.22075 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.004127 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.498992 B = 6782.764653 C = 7579.722948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 H 0.115 0.885 4 C -0.137 4.137 5 C 0.458 3.542 6 F -0.188 7.188 7 F -0.187 7.187 8 F -0.182 7.182 9 C 0.525 3.475 10 O -0.572 6.572 11 N -0.684 5.684 12 C 0.159 3.841 13 C 0.076 3.924 14 O -0.578 6.578 15 C -0.116 4.116 16 C -0.116 4.116 17 C 0.139 3.861 18 N -0.603 5.603 19 C -0.258 4.258 20 H 0.067 0.933 21 C -0.040 4.040 22 N -0.930 5.930 23 Si 0.961 3.039 24 H -0.265 1.265 25 H -0.292 1.292 26 H -0.297 1.297 27 C 0.192 3.808 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.403 0.597 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.388 0.612 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.013 0.987 42 H 0.055 0.945 43 H 0.248 0.752 44 H 0.070 0.930 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -5.549 -15.074 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.131 4.131 3 H 0.133 0.867 4 C -0.176 4.176 5 C 0.404 3.596 6 F -0.169 7.169 7 F -0.168 7.168 8 F -0.164 7.164 9 C 0.312 3.688 10 O -0.453 6.453 11 N -0.332 5.332 12 C 0.071 3.929 13 C -0.003 4.003 14 O -0.384 6.384 15 C -0.154 4.154 16 C -0.155 4.155 17 C 0.014 3.986 18 N -0.327 5.327 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.236 4.236 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.189 1.189 25 H -0.218 1.218 26 H -0.225 1.225 27 C 0.066 3.934 28 H 0.103 0.897 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.238 0.762 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.236 0.764 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.031 0.969 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 3.849 -5.554 -15.077 16.522 hybrid contribution -1.176 0.474 0.565 1.388 sum 2.673 -5.080 -14.512 15.606 Atomic orbital electron populations 1.22030 0.91393 1.03856 1.03644 1.21236 0.98968 1.01470 0.91451 0.86683 1.22623 1.06221 1.00384 0.88334 1.20567 0.74648 0.78338 0.86010 1.93178 1.89587 1.38140 1.96007 1.93181 1.84081 1.84342 1.55245 1.93163 1.30521 1.96368 1.96332 1.20426 0.79657 0.83990 0.84693 1.90575 1.40514 1.27058 1.87140 1.45775 1.46840 1.35971 1.04593 1.21048 0.93504 0.91378 0.86953 1.22494 0.81406 0.96324 1.00122 1.86522 1.20509 1.33916 1.97466 1.21698 0.93405 0.97872 1.02423 1.21795 1.00270 0.94879 0.98557 1.21102 0.84450 0.98249 0.94847 1.44201 1.01569 1.01868 1.85013 1.19443 1.03492 0.93151 1.22777 0.91530 1.25837 1.02224 0.99316 0.96223 1.70115 1.27578 1.30764 1.29103 0.85303 0.79139 0.79593 0.76976 1.18926 1.21841 1.22467 1.20637 0.99074 0.83511 0.90190 0.89749 0.91261 0.92153 0.86127 0.86031 0.76208 0.91907 0.93392 0.76433 0.90483 0.91688 0.90453 0.92808 0.96933 0.92686 0.94226 0.91168 0.98016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 8.24 71.98 0.59 -2.69 16 2 C -0.11 -2.48 2.63 -11.54 -0.03 -2.51 16 3 H 0.12 2.48 7.50 -2.39 -0.02 2.46 16 4 C -0.14 -2.62 4.18 30.59 0.13 -2.49 16 5 C 0.46 8.85 3.11 71.98 0.22 9.07 16 6 F -0.19 -3.96 16.46 44.97 0.74 -3.22 16 7 F -0.19 -3.76 17.32 44.97 0.78 -2.98 16 8 F -0.18 -3.64 14.45 44.97 0.65 -2.99 16 9 C 0.53 15.37 6.49 87.66 0.57 15.94 16 10 O -0.57 -18.38 12.22 -3.03 -0.04 -18.42 16 11 N -0.68 -22.85 3.85 -422.56 -1.63 -24.47 16 12 C 0.16 5.75 0.45 3.68 0.00 5.75 16 13 C 0.08 2.49 5.70 71.98 0.41 2.90 16 14 O -0.58 -19.13 13.05 -148.98 -1.94 -21.07 16 15 C -0.12 -3.80 4.44 30.62 0.14 -3.67 16 16 C -0.12 -3.77 5.93 30.67 0.18 -3.58 16 17 C 0.14 5.47 6.52 86.36 0.56 6.03 16 18 N -0.60 -28.12 2.90 -699.07 -2.03 -30.15 16 19 C -0.26 -13.19 9.57 84.03 0.80 -12.39 16 20 H 0.07 3.33 7.85 -2.91 -0.02 3.31 16 21 C -0.04 -2.10 5.07 84.86 0.43 -1.67 16 22 N -0.93 -52.72 11.05 21.65 0.24 -52.48 16 23 Si 0.96 42.95 29.56 68.60 2.03 44.98 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 27 C 0.19 8.74 3.78 86.36 0.33 9.07 16 28 H 0.08 1.64 6.25 -2.38 -0.01 1.63 16 29 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 30 H 0.06 1.47 7.20 -2.38 -0.02 1.45 16 31 H 0.12 2.25 7.96 -2.39 -0.02 2.23 16 32 H 0.12 2.19 8.11 -2.39 -0.02 2.17 16 33 H 0.40 14.52 7.66 -92.71 -0.71 13.81 16 34 H 0.06 2.02 6.31 -2.38 -0.02 2.01 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.39 8.91 9.12 -74.05 -0.68 8.24 16 37 H 0.08 2.50 6.21 -2.39 -0.01 2.48 16 38 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.78 7.46 -2.39 -0.02 1.77 16 41 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 43 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 44 H 0.07 3.70 5.96 -2.39 -0.01 3.69 16 45 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -61.54 360.89 2.79 -58.74 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: -0.34 Total: 32.31 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: 4.34 Total: 19.75 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -3.41 Total: -107.10 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.98 Total: -39.49 kcal Atomic # 9 Polarization: -11.36 SS G_CDS: 2.17 Total: -9.19 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -61.54 2.79 -58.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754855038.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.871 kcal (2) G-P(sol) polarization free energy of solvation -61.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds