Wall clock time and date at job start Tue Mar 31 2020 21:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46833 * 2 1 4 4 O 1.42894 * 109.47187 * 120.00346 * 2 1 3 5 5 C 1.52999 * 109.46685 * 240.00221 * 2 1 3 6 6 N 1.46505 * 109.46643 * 180.02562 * 5 2 1 7 7 C 1.34774 * 119.99733 * 90.00362 * 6 5 2 8 8 O 1.21585 * 120.00302 * 355.34376 * 7 6 5 9 9 N 1.34782 * 119.99874 * 175.35001 * 7 6 5 10 10 C 1.40024 * 120.00320 * 187.08340 * 9 7 6 11 11 C 1.38920 * 119.99664 * 336.95340 * 10 9 7 12 12 C 1.38010 * 119.99372 * 179.79040 * 11 10 9 13 13 C 1.38896 * 120.00355 * 0.46584 * 12 11 10 14 14 O 1.35782 * 120.00124 * 179.76578 * 13 12 11 15 15 C 1.34810 * 117.00197 * 189.65339 * 14 13 12 16 16 H 1.07996 * 120.00483 * 7.24866 * 15 14 13 17 17 C 1.38628 * 119.99873 * 187.25659 * 15 14 13 18 18 N 1.31582 * 119.99899 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00145 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47058 * 90.00567 * 19 17 15 21 21 H 1.48504 * 109.47306 * 210.00316 * 19 17 15 22 22 H 1.48494 * 109.47244 * 330.00472 * 19 17 15 23 23 C 1.38909 * 120.00185 * 359.78788 * 13 12 11 24 24 C 1.38004 * 119.99808 * 359.97438 * 23 13 12 25 25 C 1.46495 * 120.00017 * 269.99666 * 6 5 2 26 26 H 1.08998 * 109.47320 * 183.33680 * 25 6 5 27 27 C 1.53001 * 109.47090 * 63.33153 * 25 6 5 28 28 C 1.53004 * 109.47152 * 303.33365 * 25 6 5 29 29 O 1.42898 * 109.47168 * 294.99566 * 28 25 6 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47042 * 300.00333 * 1 2 3 32 32 H 1.09001 * 109.47019 * 59.99567 * 1 2 3 33 33 H 0.96699 * 114.00181 * 59.99546 * 4 2 1 34 34 H 1.09001 * 109.47219 * 60.00335 * 5 2 1 35 35 H 1.08998 * 109.47509 * 299.99977 * 5 2 1 36 36 H 0.97001 * 120.00052 * 7.07768 * 9 7 6 37 37 H 1.07997 * 119.99945 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.99231 * 180.22872 * 12 11 10 39 39 H 0.97001 * 119.99822 * 179.97438 * 18 17 15 40 40 H 1.08003 * 119.99661 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.99905 * 179.97438 * 24 23 13 42 42 H 1.08996 * 109.47090 * 59.99922 * 27 25 6 43 43 H 1.09004 * 109.47124 * 179.97438 * 27 25 6 44 44 H 1.08996 * 109.47154 * 299.99729 * 27 25 6 45 45 H 1.08993 * 109.47256 * 55.00174 * 28 25 6 46 46 H 1.09006 * 109.47024 * 174.99993 * 28 25 6 47 47 H 0.96701 * 114.00699 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5049 -0.7217 -1.2490 7 6 4.1783 -1.7330 -0.6655 8 8 3.5729 -2.6006 -0.0662 9 7 5.5228 -1.7824 -0.7462 10 6 6.2119 -2.9049 -0.2710 11 6 5.6260 -3.7271 0.6833 12 6 6.3035 -4.8358 1.1484 13 6 7.5750 -5.1243 0.6696 14 8 8.2434 -6.2125 1.1308 15 6 9.5406 -6.3272 0.7819 16 1 10.0338 -5.5188 0.2628 17 6 10.2414 -7.4831 1.0895 18 7 11.5073 -7.5953 0.7486 19 14 9.3885 -8.8813 1.9879 20 1 8.7829 -9.8087 0.9988 21 1 10.3798 -9.6168 2.8135 22 1 8.3250 -8.3301 2.8655 23 6 8.1630 -4.2992 -0.2807 24 6 7.4836 -3.1932 -0.7495 25 6 4.2380 0.3768 -1.8830 26 1 5.3080 0.1748 -1.8355 27 6 3.9326 1.6842 -1.1493 28 6 3.8068 0.5003 -3.3459 29 8 4.1971 -0.6753 -4.0583 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7210 -1.5952 1.2328 34 1 1.6766 -0.2073 -2.1393 35 1 1.6766 -1.7489 -1.2494 36 1 6.0130 -1.0405 -1.1335 37 1 4.6388 -3.5007 1.0583 38 1 5.8464 -5.4770 1.8876 39 1 11.9977 -8.4040 0.9641 40 1 9.1519 -4.5233 -0.6527 41 1 7.9410 -2.5515 -1.4881 42 1 4.2396 1.5962 -0.1072 43 1 4.4783 2.5015 -1.6208 44 1 2.8626 1.8862 -1.1969 45 1 2.7240 0.6137 -3.3972 46 1 4.2850 1.3717 -3.7932 47 1 3.9556 -0.6663 -4.9947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771664244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:21 Heat of formation + Delta-G solvation = -104.901817 kcal Electronic energy + Delta-G solvation = -30093.507477 eV Core-core repulsion = 25857.474718 eV Total energy + Delta-G solvation = -4236.032759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.84126 -39.08998 -38.05865 -37.43795 -36.43561 -35.46404 -33.88405 -32.22442 -31.95032 -31.06607 -30.13138 -28.27172 -26.66404 -26.39346 -24.97736 -22.50373 -22.15184 -22.09662 -21.09495 -19.52102 -18.86370 -17.76787 -17.67990 -17.26890 -16.97368 -16.38962 -15.78412 -15.69039 -15.17778 -15.10153 -14.64078 -14.44698 -14.19798 -13.78696 -13.75775 -13.58372 -13.45094 -13.22796 -12.88165 -12.72594 -12.66937 -12.50184 -12.34684 -12.22099 -12.07060 -11.82577 -11.73729 -11.60239 -11.37531 -11.01281 -10.86889 -10.72220 -10.44359 -10.37248 -10.09874 -9.69457 -9.50422 -9.16276 -8.77705 -8.62369 -8.14086 -6.83986 -6.32474 -3.97441 2.18901 2.29913 2.55182 3.28383 3.32452 3.37275 3.49297 3.63647 3.85001 4.24728 4.32955 4.39607 4.44235 4.60618 4.65611 4.77302 4.81426 4.84155 4.94805 4.98579 5.07103 5.08494 5.18592 5.21873 5.36093 5.37930 5.46547 5.59825 5.64605 5.70439 5.83112 5.90555 6.13730 6.22195 6.26276 6.43618 6.71457 6.88913 6.97085 7.21554 7.23414 7.25944 7.37759 7.64247 7.74644 7.89066 8.06669 8.14429 8.72293 9.04035 9.69246 10.75741 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002547 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.670769 B =10989.814119 C =11922.628342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.080 3.920 3 H 0.098 0.902 4 O -0.552 6.552 5 C 0.102 3.898 6 N -0.612 5.612 7 C 0.718 3.282 8 O -0.571 6.571 9 N -0.671 5.671 10 C 0.072 3.928 11 C -0.093 4.093 12 C -0.174 4.174 13 C 0.143 3.857 14 O -0.222 6.222 15 C -0.384 4.384 16 H 0.104 0.896 17 C 0.061 3.939 18 N -0.884 5.884 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.283 1.283 22 H -0.259 1.259 23 C -0.200 4.200 24 C -0.105 4.105 25 C 0.136 3.864 26 H 0.092 0.908 27 C -0.165 4.165 28 C 0.063 3.937 29 O -0.563 6.563 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.381 0.619 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.397 0.603 37 H 0.157 0.843 38 H 0.119 0.881 39 H 0.278 0.722 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.228 21.499 -8.749 30.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.019 3.981 3 H 0.116 0.884 4 O -0.358 6.358 5 C -0.022 4.022 6 N -0.348 5.348 7 C 0.421 3.579 8 O -0.449 6.449 9 N -0.318 5.318 10 C -0.021 4.021 11 C -0.113 4.113 12 C -0.194 4.194 13 C 0.092 3.908 14 O -0.127 6.127 15 C -0.460 4.460 16 H 0.121 0.879 17 C -0.142 4.142 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.183 1.183 23 C -0.220 4.220 24 C -0.126 4.126 25 C 0.031 3.969 26 H 0.110 0.890 27 C -0.223 4.223 28 C -0.016 4.016 29 O -0.368 6.368 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.233 0.767 37 H 0.174 0.826 38 H 0.137 0.863 39 H 0.088 0.912 40 H 0.153 0.847 41 H 0.128 0.872 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.050 20.955 -7.495 29.955 hybrid contribution -0.266 -0.402 -0.914 1.033 sum -20.317 20.554 -8.409 30.099 Atomic orbital electron populations 1.22480 0.96418 1.02832 1.02606 1.22513 0.92535 0.97144 0.85896 0.88428 1.86552 1.77297 1.29603 1.42390 1.22040 0.79282 1.02792 0.98077 1.46875 1.05662 1.22661 1.59585 1.15642 0.81489 0.81507 0.79278 1.90706 1.67790 1.39878 1.46542 1.42489 1.04873 1.20250 1.64213 1.17249 0.93430 0.91082 1.00365 1.21439 1.01067 0.93774 0.94981 1.20243 0.94167 1.00182 1.04807 1.19213 0.91429 0.87938 0.92240 1.83615 1.24806 1.38333 1.65991 1.20721 0.81626 1.04324 1.39358 0.87902 1.24463 0.95141 0.97643 0.96924 1.69666 1.08089 1.28906 1.45656 0.86180 0.79503 0.81058 0.80173 1.20018 1.20922 1.18294 1.21044 1.02343 0.97117 1.01504 1.20409 0.93851 0.98081 1.00211 1.21107 0.97323 0.87884 0.90589 0.89027 1.22260 1.02560 0.95798 1.01723 1.22592 0.98789 0.88014 0.92198 1.86592 1.83471 1.40617 1.26077 0.92030 0.91608 0.91829 0.77035 0.90282 0.89460 0.76678 0.82617 0.86311 0.91231 0.84694 0.87184 0.90854 0.91105 0.91670 0.93155 0.92488 0.77345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.14 9.53 37.16 0.35 -0.78 16 2 C 0.08 0.65 3.59 -26.73 -0.10 0.56 16 3 H 0.10 0.74 5.42 -51.93 -0.28 0.46 16 4 O -0.55 -6.50 12.05 -48.68 -0.59 -7.08 16 5 C 0.10 0.88 4.64 -4.04 -0.02 0.86 16 6 N -0.61 -6.43 2.30 -171.80 -0.40 -6.83 16 7 C 0.72 10.71 7.76 -86.92 -0.67 10.04 16 8 O -0.57 -10.00 11.20 -8.16 -0.09 -10.09 16 9 N -0.67 -10.09 5.28 -14.18 -0.07 -10.17 16 10 C 0.07 1.34 6.50 -83.62 -0.54 0.80 16 11 C -0.09 -1.87 8.86 -39.41 -0.35 -2.22 16 12 C -0.17 -3.80 9.98 -39.42 -0.39 -4.20 16 13 C 0.14 3.49 6.63 -39.09 -0.26 3.23 16 14 O -0.22 -6.08 8.58 0.01 0.00 -6.08 16 15 C -0.38 -11.13 9.83 30.88 0.30 -10.83 16 16 H 0.10 3.03 5.68 -52.49 -0.30 2.73 16 17 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 18 N -0.88 -26.13 13.96 55.48 0.77 -25.35 16 19 Si 0.91 22.41 28.62 -169.99 -4.86 17.54 16 20 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.26 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.20 -4.48 9.09 -39.42 -0.36 -4.83 16 24 C -0.10 -1.98 9.92 -39.42 -0.39 -2.37 16 25 C 0.14 1.04 2.91 -67.93 -0.20 0.84 16 26 H 0.09 0.75 5.46 -51.93 -0.28 0.47 16 27 C -0.17 -0.93 8.35 37.16 0.31 -0.62 16 28 C 0.06 0.37 6.37 37.16 0.24 0.61 16 29 O -0.56 -4.65 13.61 -35.23 -0.48 -5.13 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.38 4.25 8.31 45.56 0.38 4.63 16 34 H 0.08 0.48 6.17 -51.93 -0.32 0.16 16 35 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 36 H 0.40 4.85 6.17 -40.82 -0.25 4.60 16 37 H 0.16 3.11 5.24 -52.58 -0.28 2.83 16 38 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 39 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.14 3.12 5.83 -52.48 -0.31 2.82 16 41 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.31 6.05 -51.93 -0.31 -0.01 16 45 H 0.05 0.24 6.35 -51.93 -0.33 -0.09 16 46 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 47 H 0.38 1.50 9.12 45.56 0.42 1.92 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -35.26 376.95 -6.98 -42.25 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -4.77 Total: 12.53 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.17 Total: -7.26 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.30 Total: -42.35 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -1.16 Total: -28.39 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.86 Total: 17.54 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.26 -6.98 -42.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771664244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.656 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds