Wall clock time and date at job start Tue Mar 31 2020 21:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46833 * 2 1 4 4 O 1.42894 * 109.47187 * 120.00346 * 2 1 3 5 5 C 1.52999 * 109.46685 * 240.00221 * 2 1 3 6 6 N 1.46505 * 109.46643 * 180.02562 * 5 2 1 7 7 C 1.34774 * 119.99733 * 90.00362 * 6 5 2 8 8 O 1.21585 * 120.00302 * 355.34376 * 7 6 5 9 9 N 1.34782 * 119.99874 * 175.35001 * 7 6 5 10 10 C 1.40024 * 120.00320 * 187.08340 * 9 7 6 11 11 C 1.38920 * 119.99664 * 336.95340 * 10 9 7 12 12 C 1.38010 * 119.99372 * 179.79040 * 11 10 9 13 13 C 1.38896 * 120.00355 * 0.46584 * 12 11 10 14 14 O 1.35782 * 120.00124 * 179.76578 * 13 12 11 15 15 C 1.34810 * 117.00197 * 189.65339 * 14 13 12 16 16 H 1.07996 * 120.00483 * 7.24866 * 15 14 13 17 17 C 1.38628 * 119.99873 * 187.25659 * 15 14 13 18 18 N 1.31582 * 119.99899 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00145 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47058 * 90.00567 * 19 17 15 21 21 H 1.48504 * 109.47306 * 210.00316 * 19 17 15 22 22 H 1.48494 * 109.47244 * 330.00472 * 19 17 15 23 23 C 1.38909 * 120.00185 * 359.78788 * 13 12 11 24 24 C 1.38004 * 119.99808 * 359.97438 * 23 13 12 25 25 C 1.46495 * 120.00017 * 269.99666 * 6 5 2 26 26 H 1.08998 * 109.47320 * 183.33680 * 25 6 5 27 27 C 1.53001 * 109.47090 * 63.33153 * 25 6 5 28 28 C 1.53004 * 109.47152 * 303.33365 * 25 6 5 29 29 O 1.42898 * 109.47168 * 294.99566 * 28 25 6 30 30 H 1.08997 * 109.47540 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47042 * 300.00333 * 1 2 3 32 32 H 1.09001 * 109.47019 * 59.99567 * 1 2 3 33 33 H 0.96699 * 114.00181 * 59.99546 * 4 2 1 34 34 H 1.09001 * 109.47219 * 60.00335 * 5 2 1 35 35 H 1.08998 * 109.47509 * 299.99977 * 5 2 1 36 36 H 0.97001 * 120.00052 * 7.07768 * 9 7 6 37 37 H 1.07997 * 119.99945 * 0.02562 * 11 10 9 38 38 H 1.08000 * 119.99231 * 180.22872 * 12 11 10 39 39 H 0.97001 * 119.99822 * 179.97438 * 18 17 15 40 40 H 1.08003 * 119.99661 * 179.97438 * 23 13 12 41 41 H 1.08003 * 119.99905 * 179.97438 * 24 23 13 42 42 H 1.08996 * 109.47090 * 59.99922 * 27 25 6 43 43 H 1.09004 * 109.47124 * 179.97438 * 27 25 6 44 44 H 1.08996 * 109.47154 * 299.99729 * 27 25 6 45 45 H 1.08993 * 109.47256 * 55.00174 * 28 25 6 46 46 H 1.09006 * 109.47024 * 174.99993 * 28 25 6 47 47 H 0.96701 * 114.00699 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.0399 -0.7212 -1.2493 6 7 3.5049 -0.7217 -1.2490 7 6 4.1783 -1.7330 -0.6655 8 8 3.5729 -2.6006 -0.0662 9 7 5.5228 -1.7824 -0.7462 10 6 6.2119 -2.9049 -0.2710 11 6 5.6260 -3.7271 0.6833 12 6 6.3035 -4.8358 1.1484 13 6 7.5750 -5.1243 0.6696 14 8 8.2434 -6.2125 1.1308 15 6 9.5406 -6.3272 0.7819 16 1 10.0338 -5.5188 0.2628 17 6 10.2414 -7.4831 1.0895 18 7 11.5073 -7.5953 0.7486 19 14 9.3885 -8.8813 1.9879 20 1 8.7829 -9.8087 0.9988 21 1 10.3798 -9.6168 2.8135 22 1 8.3250 -8.3301 2.8655 23 6 8.1630 -4.2992 -0.2807 24 6 7.4836 -3.1932 -0.7495 25 6 4.2380 0.3768 -1.8830 26 1 5.3080 0.1748 -1.8355 27 6 3.9326 1.6842 -1.1493 28 6 3.8068 0.5003 -3.3459 29 8 4.1971 -0.6753 -4.0583 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7210 -1.5952 1.2328 34 1 1.6766 -0.2073 -2.1393 35 1 1.6766 -1.7489 -1.2494 36 1 6.0130 -1.0405 -1.1335 37 1 4.6388 -3.5007 1.0583 38 1 5.8464 -5.4770 1.8876 39 1 11.9977 -8.4040 0.9641 40 1 9.1519 -4.5233 -0.6527 41 1 7.9410 -2.5515 -1.4881 42 1 4.2396 1.5962 -0.1072 43 1 4.4783 2.5015 -1.6208 44 1 2.8626 1.8862 -1.1969 45 1 2.7240 0.6137 -3.3972 46 1 4.2850 1.3717 -3.7932 47 1 3.9556 -0.6663 -4.9947 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771664244.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:20 Heat of formation + Delta-G solvation = -132.571634 kcal Electronic energy + Delta-G solvation = -30094.707330 eV Core-core repulsion = 25857.474718 eV Total energy + Delta-G solvation = -4237.232612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95344 -40.71108 -39.24031 -38.09537 -37.92008 -36.24683 -35.31195 -34.31597 -32.62894 -31.87209 -31.78493 -29.73446 -27.56676 -27.09718 -26.72245 -23.97905 -23.40204 -22.85028 -22.40278 -20.69183 -20.00022 -19.48420 -19.03098 -18.24406 -18.18064 -17.44834 -16.73501 -16.66137 -16.48568 -15.97645 -15.92328 -15.73909 -15.49461 -15.35537 -15.18633 -14.83782 -14.42699 -14.29677 -14.15637 -13.99365 -13.72147 -13.49050 -13.47274 -13.23422 -13.20409 -12.99777 -12.88690 -12.75661 -12.53234 -12.41925 -11.98273 -11.96820 -11.65264 -11.46661 -11.22551 -11.12730 -10.87568 -10.74451 -10.59064 -9.82908 -9.58389 -8.51245 -8.47123 -6.17214 0.51924 0.60635 1.32598 1.36439 1.53447 1.55891 2.15180 2.31002 2.76657 2.80302 3.13385 3.18834 3.25986 3.56779 3.82633 3.87122 4.03931 4.07215 4.16013 4.19065 4.28739 4.35536 4.43464 4.51757 4.54880 4.59540 4.62886 4.73400 4.77870 4.83187 4.88780 4.93993 5.08672 5.15459 5.21771 5.25913 5.33036 5.38625 5.51968 5.57320 5.66490 5.80260 5.89866 5.97571 6.27548 6.82949 6.88124 6.91694 6.94375 7.55109 7.64588 8.64704 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019283 B = 0.002547 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.670769 B =10989.814119 C =11922.628342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.079 3.921 3 H 0.108 0.892 4 O -0.577 6.577 5 C 0.101 3.899 6 N -0.601 5.601 7 C 0.708 3.292 8 O -0.601 6.601 9 N -0.666 5.666 10 C 0.098 3.902 11 C -0.099 4.099 12 C -0.171 4.171 13 C 0.104 3.896 14 O -0.248 6.248 15 C -0.394 4.394 16 H 0.082 0.918 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.968 3.032 20 H -0.268 1.268 21 H -0.266 1.266 22 H -0.265 1.265 23 C -0.206 4.206 24 C -0.099 4.099 25 C 0.125 3.875 26 H 0.084 0.916 27 C -0.159 4.159 28 C 0.064 3.936 29 O -0.594 6.594 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.379 0.621 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.412 0.588 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.284 0.716 40 H 0.120 0.880 41 H 0.147 0.853 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.653 24.118 -10.142 34.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.019 3.981 3 H 0.126 0.874 4 O -0.384 6.384 5 C -0.022 4.022 6 N -0.336 5.336 7 C 0.410 3.590 8 O -0.482 6.482 9 N -0.315 5.315 10 C 0.003 3.997 11 C -0.119 4.119 12 C -0.191 4.191 13 C 0.055 3.945 14 O -0.156 6.156 15 C -0.470 4.470 16 H 0.100 0.900 17 C -0.189 4.189 18 N -0.565 5.565 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.191 1.191 22 H -0.189 1.189 23 C -0.226 4.226 24 C -0.120 4.120 25 C 0.021 3.979 26 H 0.102 0.898 27 C -0.217 4.217 28 C -0.014 4.014 29 O -0.402 6.402 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.106 0.894 33 H 0.228 0.772 34 H 0.131 0.869 35 H 0.086 0.914 36 H 0.252 0.748 37 H 0.179 0.821 38 H 0.144 0.856 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.165 0.835 42 H 0.072 0.928 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.101 0.899 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -22.523 23.676 -8.945 33.880 hybrid contribution 0.259 -0.867 -0.631 1.103 sum -22.264 22.809 -9.576 33.281 Atomic orbital electron populations 1.22413 0.94659 1.02951 1.03656 1.22682 0.93933 0.97010 0.84505 0.87443 1.86522 1.78006 1.29672 1.44201 1.22206 0.78009 1.02262 0.99769 1.46946 1.06454 1.22008 1.58217 1.15915 0.81277 0.82325 0.79465 1.90676 1.68205 1.41424 1.47870 1.42411 1.05323 1.19649 1.64126 1.17352 0.93028 0.91039 0.98256 1.21606 1.01254 0.93599 0.95460 1.20417 0.93318 1.00712 1.04652 1.19614 0.92575 0.88229 0.94060 1.83551 1.24031 1.40140 1.67829 1.20685 0.82770 1.04183 1.39372 0.90049 1.25237 0.95792 0.99964 0.97859 1.69738 1.09273 1.30043 1.47456 0.85257 0.78514 0.78109 0.79098 1.19299 1.19074 1.18923 1.21074 1.01971 0.98114 1.01428 1.20637 0.93761 0.97261 1.00334 1.21451 0.96660 0.87610 0.92167 0.89810 1.22206 1.03793 0.95272 1.00387 1.22668 1.00016 0.88189 0.90530 1.86534 1.84013 1.41945 1.27738 0.92419 0.91899 0.89403 0.77234 0.86948 0.91417 0.74807 0.82075 0.85617 0.90667 0.86230 0.83499 0.92844 0.88675 0.90339 0.91488 0.89864 0.75399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 9.53 71.98 0.69 -1.06 16 2 C 0.08 1.11 3.59 30.59 0.11 1.22 16 3 H 0.11 1.30 5.42 -2.39 -0.01 1.29 16 4 O -0.58 -13.14 12.05 -136.12 -1.64 -14.78 16 5 C 0.10 1.48 4.64 86.38 0.40 1.88 16 6 N -0.60 -11.23 2.30 -815.71 -1.88 -13.11 16 7 C 0.71 20.04 7.76 179.05 1.39 21.43 16 8 O -0.60 -20.67 11.20 8.88 0.10 -20.57 16 9 N -0.67 -18.77 5.28 -317.04 -1.67 -20.44 16 10 C 0.10 3.54 6.50 38.15 0.25 3.78 16 11 C -0.10 -3.96 8.86 22.38 0.20 -3.76 16 12 C -0.17 -7.59 9.98 22.37 0.22 -7.36 16 13 C 0.10 5.22 6.63 22.59 0.15 5.37 16 14 O -0.25 -14.11 8.58 -22.89 -0.20 -14.30 16 15 C -0.39 -23.83 9.83 67.91 0.67 -23.17 16 16 H 0.08 5.10 5.68 -2.91 -0.02 5.08 16 17 C 0.01 0.57 5.49 84.82 0.47 1.03 16 18 N -0.92 -56.23 13.96 21.61 0.30 -55.92 16 19 Si 0.97 47.17 28.62 68.60 1.96 49.13 16 20 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -13.01 7.11 99.48 0.71 -12.31 16 23 C -0.21 -9.42 9.09 22.38 0.20 -9.22 16 24 C -0.10 -3.64 9.92 22.37 0.22 -3.42 16 25 C 0.12 1.50 2.91 44.99 0.13 1.63 16 26 H 0.08 1.13 5.46 -2.39 -0.01 1.11 16 27 C -0.16 -1.21 8.35 71.98 0.60 -0.61 16 28 C 0.06 0.49 6.37 71.98 0.46 0.95 16 29 O -0.59 -7.95 13.61 -148.98 -2.03 -9.98 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.38 8.53 8.31 -74.06 -0.62 7.91 16 34 H 0.11 0.90 6.17 -2.39 -0.01 0.88 16 35 H 0.07 1.31 7.49 -2.39 -0.02 1.29 16 36 H 0.41 9.03 6.17 -92.71 -0.57 8.46 16 37 H 0.16 6.39 5.24 -4.31 -0.02 6.36 16 38 H 0.13 5.27 8.06 -2.91 -0.02 5.24 16 39 H 0.28 15.85 8.31 -92.71 -0.77 15.08 16 40 H 0.12 5.82 5.83 -2.91 -0.02 5.80 16 41 H 0.15 4.27 8.06 -2.91 -0.02 4.25 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 44 H 0.08 0.40 6.05 -2.39 -0.01 0.38 16 45 H 0.07 0.29 6.35 -2.39 -0.02 0.28 16 46 H 0.08 0.25 8.14 -2.38 -0.02 0.23 16 47 H 0.40 1.96 9.12 -74.06 -0.68 1.29 16 Total: -1.00 -79.59 376.95 0.29 -79.31 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.82 Total: 31.97 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 6.15 Total: -11.30 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -3.25 Total: -89.47 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -3.76 Total: -59.64 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.96 Total: 49.13 kcal Total: -79.59 0.29 -79.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771664244.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.265 kcal (2) G-P(sol) polarization free energy of solvation -79.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds