Wall clock time and date at job start Tue Mar 31 2020 21:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34633 * 116.99932 * 2 1 4 4 O 1.21506 * 120.00603 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99601 * 180.02562 * 3 2 1 6 6 C 1.46495 * 120.00335 * 359.97438 * 5 3 2 7 7 C 1.46502 * 119.99732 * 179.97438 * 5 3 2 8 8 C 1.53010 * 109.46910 * 89.99954 * 7 5 3 9 9 C 1.52997 * 109.46938 * 179.97438 * 8 7 5 10 10 C 1.50702 * 109.47266 * 179.97438 * 9 8 7 11 11 O 1.21287 * 119.99578 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00755 * 180.02562 * 10 9 8 13 13 C 1.46493 * 120.00646 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47443 * 270.00265 * 13 12 10 15 15 H 1.08001 * 120.00056 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00480 * 179.97438 * 14 13 12 17 17 N 1.31517 * 119.99528 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00487 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46798 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47215 * 119.99681 * 18 16 14 21 21 H 1.48494 * 109.47431 * 240.00047 * 18 16 14 22 22 C 1.46505 * 119.99455 * 0.02562 * 12 10 9 23 23 C 1.50703 * 109.47064 * 90.00114 * 22 12 10 24 24 C 1.34515 * 125.79060 * 89.99944 * 23 22 12 25 25 C 1.41380 * 106.83832 * 179.97438 * 24 23 22 26 26 C 1.34506 * 106.84493 * 359.97438 * 25 24 23 27 27 O 1.34306 * 125.78568 * 269.69282 * 23 22 12 28 28 H 1.09000 * 109.46819 * 60.00031 * 1 2 3 29 29 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46827 * 299.99710 * 1 2 3 31 31 H 1.09002 * 109.47136 * 269.99986 * 6 5 3 32 32 H 1.09000 * 109.47334 * 29.99959 * 6 5 3 33 33 H 1.09003 * 109.47175 * 150.00451 * 6 5 3 34 34 H 1.08994 * 109.47522 * 330.00433 * 7 5 3 35 35 H 1.09002 * 109.47361 * 209.99801 * 7 5 3 36 36 H 1.09006 * 109.46950 * 60.00227 * 8 7 5 37 37 H 1.09002 * 109.46984 * 300.00078 * 8 7 5 38 38 H 1.09004 * 109.47424 * 60.00461 * 9 8 7 39 39 H 1.09002 * 109.47551 * 299.99980 * 9 8 7 40 40 H 1.09006 * 109.46911 * 30.00087 * 13 12 10 41 41 H 1.08996 * 109.47170 * 149.99599 * 13 12 10 42 42 H 0.97003 * 119.99687 * 180.02562 * 17 16 14 43 43 H 1.09002 * 109.47068 * 210.00083 * 22 12 10 44 44 H 1.09001 * 109.47372 * 330.00170 * 22 12 10 45 45 H 1.07996 * 126.58016 * 0.03378 * 24 23 22 46 46 H 1.08006 * 126.57610 * 179.97438 * 25 24 23 47 47 H 1.08005 * 125.79499 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4016 2.2187 -0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.2071 0.0414 -0.0005 7 6 4.0743 2.5754 -0.0011 8 6 4.3064 3.0301 1.4413 9 6 5.0016 4.3931 1.4407 10 6 5.2296 4.8413 2.8614 11 8 4.8717 4.1394 3.7835 12 7 5.8311 6.0220 3.1073 13 6 6.0523 6.4580 4.4882 14 6 4.8623 7.2525 4.9609 15 1 4.0251 7.4168 4.2987 16 6 4.8422 7.7699 6.2388 17 7 5.8614 7.5695 7.0453 18 14 3.3674 8.7555 6.8244 19 1 2.3616 8.8359 5.7348 20 1 2.7639 8.0885 8.0061 21 1 3.8038 10.1248 7.1980 22 6 6.2629 6.8700 1.9934 23 6 5.1449 7.8058 1.6117 24 6 4.9381 9.0334 2.1213 25 6 3.7879 9.5528 1.4840 26 6 3.3610 8.6120 0.6228 27 8 4.1895 7.5577 0.7010 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.4053 -0.2630 1.0272 32 1 3.6584 -0.7481 -0.5139 33 1 5.1512 0.2213 -0.5147 34 1 3.4462 3.3031 -0.5148 35 1 5.0321 2.4950 -0.5152 36 1 4.9346 2.3024 1.9551 37 1 3.3486 3.1106 1.9555 38 1 4.3737 5.1210 0.9269 39 1 5.9594 4.3122 0.9267 40 1 6.1838 5.5853 5.1281 41 1 6.9461 7.0801 4.5341 42 1 5.8472 7.9332 7.9445 43 1 7.1351 7.4500 2.2951 44 1 6.5205 6.2443 1.1389 45 1 5.5363 9.5277 2.8723 46 1 3.3383 10.5197 1.6558 47 1 2.5003 8.6921 -0.0248 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264242589.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:43 Heat of formation + Delta-G solvation = -93.760469 kcal Electronic energy + Delta-G solvation = -29991.281960 eV Core-core repulsion = 25755.732326 eV Total energy + Delta-G solvation = -4235.549634 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.07484 -40.61841 -39.08643 -37.32221 -35.82024 -35.20014 -33.25499 -32.57713 -32.44157 -29.97806 -28.61501 -27.89192 -27.13198 -25.87788 -25.13587 -23.23819 -21.69910 -21.25514 -20.47624 -20.27303 -18.49656 -18.18572 -17.29548 -17.05445 -16.74065 -16.54723 -16.18338 -15.44541 -15.30874 -15.27215 -14.78782 -14.44843 -14.36517 -14.04579 -13.99684 -13.33886 -13.02125 -12.81622 -12.69838 -12.61932 -12.38505 -12.27688 -12.22669 -12.18960 -11.98259 -11.61126 -11.56311 -11.35689 -11.13689 -10.91516 -10.87155 -10.63215 -10.57190 -10.55457 -10.17459 -9.63795 -9.35734 -9.02473 -8.85843 -8.40767 -8.08396 -7.71863 -6.01119 -4.03230 2.01436 2.14217 2.71144 3.08792 3.30544 3.31939 3.40128 3.46034 3.56802 3.74075 4.02356 4.49199 4.84006 4.92135 4.95952 4.97512 5.05013 5.10545 5.18217 5.22631 5.28004 5.31362 5.34269 5.43278 5.50718 5.52671 5.57516 5.59603 5.69289 5.80219 5.86349 6.04508 6.21880 6.26729 6.28574 6.47737 6.50711 6.54524 6.97909 7.02515 7.13881 7.42263 7.50075 7.61863 7.96677 8.15249 8.26840 8.33958 8.94489 9.09222 9.61320 11.07399 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.003090 C = 0.002905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.070545 B = 9060.446543 C = 9635.302984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.372 6.372 3 C 0.645 3.355 4 O -0.566 6.566 5 N -0.597 5.597 6 C 0.083 3.917 7 C 0.131 3.869 8 C -0.119 4.119 9 C -0.140 4.140 10 C 0.510 3.490 11 O -0.535 6.535 12 N -0.597 5.597 13 C 0.245 3.755 14 C -0.514 4.514 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.897 5.897 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.197 3.803 23 C -0.030 4.030 24 C -0.170 4.170 25 C -0.214 4.214 26 C -0.052 4.052 27 O -0.180 6.180 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.149 0.851 46 H 0.141 0.859 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.471 -9.661 -19.328 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.399 3.601 4 O -0.454 6.454 5 N -0.337 5.337 6 C -0.060 4.060 7 C 0.010 3.990 8 C -0.158 4.158 9 C -0.181 4.181 10 C 0.297 3.703 11 O -0.411 6.411 12 N -0.329 5.329 13 C 0.126 3.874 14 C -0.553 4.553 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.537 5.537 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C 0.072 3.928 23 C -0.081 4.081 24 C -0.190 4.190 25 C -0.233 4.233 26 C -0.120 4.120 27 O -0.076 6.076 28 H 0.081 0.919 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.125 0.875 44 H 0.100 0.900 45 H 0.167 0.833 46 H 0.159 0.841 47 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -1.868 -10.006 -18.792 21.372 hybrid contribution -1.170 1.084 0.685 1.736 sum -3.038 -8.922 -18.107 20.414 Atomic orbital electron populations 1.23184 0.74564 1.03296 1.02831 1.86223 1.24067 1.31220 1.87127 1.18098 0.83304 0.82141 0.76535 1.91023 1.64201 1.34845 1.55333 1.46639 1.02208 1.08627 1.76242 1.21800 0.95854 0.85825 1.02483 1.21628 0.97117 0.82351 0.97906 1.21686 1.02363 0.95958 0.95800 1.21659 1.02041 0.98322 0.96098 1.20356 0.77787 0.81499 0.90667 1.90678 1.49580 1.54377 1.46509 1.48360 1.58504 1.17474 1.08534 1.19352 0.96730 0.96006 0.75341 1.21459 1.03427 1.32156 0.98243 0.92242 1.24890 0.96128 0.96569 0.96470 1.69941 1.30288 1.45936 1.07522 0.86522 0.83088 0.79580 0.78808 1.19762 1.21022 1.21037 1.19811 0.91327 0.91468 0.90184 1.22983 0.94077 0.97119 0.93911 1.21601 0.99564 0.95725 1.02158 1.21808 0.99429 1.01464 1.00643 1.23835 0.97398 0.86569 1.04233 1.83948 1.33426 1.39992 1.50237 0.91948 0.88091 0.91738 0.92240 0.90598 0.90705 0.89376 0.89700 0.90993 0.90683 0.88732 0.89490 0.93694 0.94962 0.92924 0.87529 0.89987 0.83281 0.84123 0.78857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 10.56 101.05 1.07 1.56 16 2 O -0.37 -4.35 9.39 -40.31 -0.38 -4.73 16 3 C 0.65 9.04 8.40 54.06 0.45 9.49 16 4 O -0.57 -9.79 15.71 -19.28 -0.30 -10.09 16 5 N -0.60 -6.95 2.87 -187.41 -0.54 -7.49 16 6 C 0.08 0.66 10.49 59.84 0.63 1.29 16 7 C 0.13 1.48 5.45 -4.04 -0.02 1.46 16 8 C -0.12 -1.72 4.83 -26.73 -0.13 -1.85 16 9 C -0.14 -2.08 4.25 -27.88 -0.12 -2.20 16 10 C 0.51 10.57 7.67 -10.99 -0.08 10.49 16 11 O -0.53 -13.57 15.56 5.55 0.09 -13.48 16 12 N -0.60 -12.35 2.44 -176.43 -0.43 -12.78 16 13 C 0.24 6.24 5.20 -5.20 -0.03 6.22 16 14 C -0.51 -14.46 9.13 -34.44 -0.31 -14.78 16 15 H 0.06 1.74 7.64 -52.49 -0.40 1.34 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.89 22.43 29.54 -169.99 -5.02 17.40 16 19 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 C 0.20 3.12 5.78 -5.19 -0.03 3.09 16 23 C -0.03 -0.52 6.85 -35.62 -0.24 -0.76 16 24 C -0.17 -3.06 10.39 -39.70 -0.41 -3.47 16 25 C -0.21 -3.44 10.91 -39.71 -0.43 -3.87 16 26 C -0.05 -0.78 12.09 29.41 0.36 -0.42 16 27 O -0.18 -2.96 9.56 5.68 0.05 -2.90 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.54 7.37 -51.93 -0.38 0.16 16 33 H 0.07 0.43 7.89 -51.93 -0.41 0.02 16 34 H 0.09 1.09 7.42 -51.93 -0.39 0.70 16 35 H 0.08 0.68 7.89 -51.93 -0.41 0.27 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.07 1.37 8.10 -51.93 -0.42 0.94 16 38 H 0.09 1.42 6.93 -51.93 -0.36 1.06 16 39 H 0.09 0.97 7.40 -51.93 -0.38 0.59 16 40 H 0.05 1.31 7.42 -51.93 -0.39 0.92 16 41 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.11 1.53 7.89 -51.93 -0.41 1.12 16 44 H 0.08 0.99 6.44 -51.93 -0.33 0.66 16 45 H 0.15 2.74 8.06 -52.49 -0.42 2.32 16 46 H 0.14 1.95 8.06 -52.48 -0.42 1.53 16 47 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 LS Contribution 400.58 15.07 6.04 6.04 Total: -1.00 -37.64 400.58 -6.37 -44.01 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.21 Total: 2.00 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 0.59 Total: 7.87 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -0.23 Total: -46.12 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.54 Total: -31.20 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.64 -6.37 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264242589.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.748 kcal (2) G-P(sol) polarization free energy of solvation -37.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds