Wall clock time and date at job start Tue Mar 31 2020 20:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47466 * 2 1 4 4 C 1.34769 * 119.99893 * 94.96732 * 3 2 1 5 5 O 1.21569 * 119.99994 * 185.39772 * 4 3 2 6 6 C 1.47708 * 120.00176 * 5.39542 * 4 3 2 7 7 C 1.39674 * 120.15370 * 55.02059 * 6 4 3 8 8 C 1.37847 * 119.92377 * 179.74481 * 7 6 4 9 9 C 1.38442 * 120.24344 * 0.27789 * 8 7 6 10 10 C 1.50695 * 119.84465 * 179.97438 * 9 8 7 11 11 C 1.38383 * 120.31060 * 359.97438 * 9 8 7 12 12 F 1.35105 * 119.96666 * 180.02562 * 11 9 8 13 13 C 1.38548 * 120.07556 * 359.97438 * 11 9 8 14 14 F 1.35094 * 120.12513 * 180.02562 * 13 11 9 15 15 C 1.46496 * 119.99756 * 274.97250 * 3 2 1 16 16 H 1.09001 * 110.64595 * 1.68322 * 15 3 2 17 17 C 1.55156 * 110.71943 * 125.02312 * 15 3 2 18 18 C 1.54912 * 101.58119 * 153.86332 * 17 15 3 19 19 N 1.47422 * 104.82929 * 322.98672 * 18 17 15 20 20 C 1.36940 * 125.64533 * 204.16449 * 19 18 17 21 21 H 1.08005 * 119.99620 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00055 * 359.96042 * 20 19 18 23 23 N 1.31615 * 120.00199 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99773 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46900 * 90.00443 * 24 22 20 26 26 H 1.48500 * 109.46749 * 210.00218 * 24 22 20 27 27 H 1.48504 * 109.46920 * 330.00045 * 24 22 20 28 28 C 1.47018 * 108.70704 * 24.13359 * 19 18 17 29 29 H 1.08998 * 109.47517 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46886 * 300.00163 * 1 2 3 31 31 H 1.08999 * 109.46906 * 59.99609 * 1 2 3 32 32 H 1.09002 * 109.46886 * 239.99836 * 2 1 3 33 33 H 1.08999 * 109.46906 * 120.00391 * 2 1 3 34 34 H 1.08003 * 120.04062 * 0.02566 * 7 6 4 35 35 H 1.07998 * 119.87637 * 180.25124 * 8 7 6 36 36 H 1.09003 * 109.47039 * 90.00463 * 10 9 8 37 37 H 1.09002 * 109.47120 * 209.99881 * 10 9 8 38 38 H 1.08992 * 109.47388 * 329.99721 * 10 9 8 39 39 H 1.09001 * 111.00153 * 271.93419 * 17 15 3 40 40 H 1.08995 * 111.00598 * 35.78661 * 17 15 3 41 41 H 1.09003 * 110.36492 * 204.15136 * 18 17 15 42 42 H 1.08999 * 110.36768 * 81.82536 * 18 17 15 43 43 H 0.97001 * 120.00058 * 180.02562 * 23 22 20 44 44 H 1.08995 * 109.88188 * 239.52505 * 28 19 18 45 45 H 1.08996 * 109.88482 * 118.35348 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3383 1.9828 1.1628 5 8 2.6495 3.1580 1.1737 6 6 2.3109 1.2144 2.4239 7 6 3.0491 0.0346 2.5428 8 6 3.0242 -0.6760 3.7238 9 6 2.2654 -0.2278 4.7915 10 6 2.2443 -1.0120 6.0781 11 6 1.5262 0.9370 4.6827 12 9 0.7885 1.3683 5.7292 13 6 1.5425 1.6620 3.5022 14 9 0.8216 2.7995 3.3951 15 6 2.1589 2.1084 -1.2640 16 1 1.8316 1.4914 -2.1008 17 6 1.3699 3.4436 -1.2197 18 6 2.1543 4.3025 -2.2429 19 7 3.5658 3.9229 -2.0507 20 6 4.6504 4.6980 -2.3638 21 1 5.6488 4.3277 -2.1834 22 6 4.4666 5.9594 -2.9132 23 7 3.2499 6.4107 -3.1328 24 14 5.9463 7.0165 -3.3410 25 1 6.3639 6.7408 -4.7391 26 1 5.5856 8.4507 -3.2057 27 1 7.0653 6.6982 -2.4180 28 6 3.6161 2.5747 -1.4665 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6423 -0.3181 1.7121 35 1 3.5985 -1.5860 3.8163 36 1 3.0422 -0.6593 6.7317 37 1 1.2825 -0.8740 6.5720 38 1 2.3929 -2.0698 5.8614 39 1 0.3383 3.2986 -1.5408 40 1 1.4091 3.8879 -0.2252 41 1 2.0149 5.3631 -2.0337 42 1 1.8337 4.0698 -3.2583 43 1 3.1215 7.2921 -3.5170 44 1 4.1322 2.6055 -0.5070 45 1 4.1316 1.8955 -2.1455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033962813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:32 Heat of formation + Delta-G solvation = -55.022720 kcal Electronic energy + Delta-G solvation = -30425.040754 eV Core-core repulsion = 26080.083399 eV Total energy + Delta-G solvation = -4344.957354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.66274 -48.72384 -40.54565 -38.89045 -36.72804 -35.55025 -33.25621 -32.19986 -30.74168 -30.33956 -29.10013 -28.16364 -26.75338 -24.47976 -23.79426 -23.23319 -22.51684 -21.14673 -20.09518 -19.30450 -17.87588 -17.54168 -17.16172 -16.90640 -16.60658 -16.36559 -15.69056 -15.11837 -15.10614 -14.79468 -14.59306 -14.35068 -14.18510 -13.89796 -13.82234 -13.70055 -13.43987 -13.14394 -13.08103 -12.67957 -12.33544 -12.20069 -12.09977 -11.90470 -11.75815 -11.71709 -11.43508 -11.14963 -10.95263 -10.82267 -10.73590 -10.49228 -10.02623 -9.76914 -9.50310 -9.28134 -9.06051 -9.03425 -8.54041 -8.35672 -6.70110 -5.53301 -2.94121 0.38156 0.59178 2.58538 2.87127 3.16451 3.47315 3.48285 3.52081 3.54762 4.03261 4.12841 4.29786 4.39589 4.57706 4.60023 4.81543 4.94796 5.07438 5.12338 5.13884 5.26644 5.33692 5.46519 5.53404 5.55402 5.58102 5.59618 5.64747 5.67527 5.70298 5.79109 5.82916 5.92090 6.08119 6.30823 6.35308 6.57728 6.61767 6.67584 6.81768 7.19454 7.49965 7.66747 7.74415 7.98370 8.31995 8.49385 9.33465 9.94682 10.59556 11.50592 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017355 B = 0.003136 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.939386 B = 8927.180267 C = 9339.781161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.596 5.596 4 C 0.552 3.448 5 O -0.484 6.484 6 C -0.130 4.130 7 C -0.069 4.069 8 C -0.108 4.108 9 C -0.079 4.079 10 C -0.117 4.117 11 C 0.059 3.941 12 F -0.125 7.125 13 C 0.116 3.884 14 F -0.112 7.112 15 C 0.135 3.865 16 H 0.091 0.909 17 C -0.159 4.159 18 C 0.158 3.842 19 N -0.596 5.596 20 C -0.216 4.216 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.134 3.866 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.010 0.990 43 H 0.251 0.749 44 H 0.031 0.969 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 -21.518 14.852 26.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.329 5.329 4 C 0.337 3.663 5 O -0.357 6.357 6 C -0.134 4.134 7 C -0.087 4.087 8 C -0.126 4.126 9 C -0.080 4.080 10 C -0.173 4.173 11 C 0.039 3.961 12 F -0.103 7.103 13 C 0.095 3.905 14 F -0.090 7.090 15 C 0.033 3.967 16 H 0.109 0.891 17 C -0.199 4.199 18 C 0.033 3.967 19 N -0.322 5.322 20 C -0.344 4.344 21 H 0.093 0.907 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.007 3.993 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.049 0.951 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -5.393 -20.590 14.789 25.918 hybrid contribution 0.393 0.759 -0.137 0.865 sum -5.000 -19.831 14.653 25.159 Atomic orbital electron populations 1.22186 0.95828 1.01950 1.02829 1.21814 0.94813 0.82819 1.03434 1.47902 1.64852 1.13953 1.06234 1.17881 0.78875 0.86807 0.82742 1.90949 1.44698 1.14405 1.85657 1.20098 1.00711 0.97674 0.94955 1.21233 0.97030 0.91841 0.98631 1.20918 0.99125 1.01008 0.91517 1.19977 0.96194 0.93614 0.98186 1.20805 1.03706 0.99581 0.93238 1.17328 0.98302 0.96218 0.84234 1.91524 1.74652 1.89309 1.54829 1.17578 0.95004 0.84733 0.93194 1.91606 1.74706 1.46496 1.96217 1.22255 0.98085 0.93476 0.82893 0.89061 1.23506 0.97306 0.95438 1.03610 1.21847 0.81764 1.00621 0.92465 1.44296 1.02736 1.12311 1.72849 1.19046 0.85696 0.95960 1.33722 0.90688 1.24766 0.96759 0.97547 1.01707 1.69800 1.18504 1.18671 1.50180 0.86076 0.81592 0.79863 0.78004 1.21759 1.21699 1.20768 1.21463 0.92770 0.88474 0.96568 0.91634 0.92715 0.91852 0.90074 0.89897 0.83442 0.83633 0.90047 0.90739 0.90229 0.92939 0.89475 0.87534 0.97249 0.93855 0.95094 0.96385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.09 0.94 5.91 -4.04 -0.02 0.92 16 3 N -0.60 -8.93 2.54 -165.18 -0.42 -9.35 16 4 C 0.55 9.47 5.92 -12.40 -0.07 9.39 16 5 O -0.48 -10.92 13.30 5.31 0.07 -10.85 16 6 C -0.13 -1.74 4.91 -104.92 -0.51 -2.25 16 7 C -0.07 -0.63 7.48 -39.19 -0.29 -0.93 16 8 C -0.11 -0.75 9.67 -39.65 -0.38 -1.14 16 9 C -0.08 -0.65 5.89 -104.50 -0.62 -1.27 16 10 C -0.12 -0.64 9.82 36.00 0.35 -0.28 16 11 C 0.06 0.68 7.24 -39.41 -0.29 0.40 16 12 F -0.12 -1.51 16.37 2.25 0.04 -1.48 16 13 C 0.12 1.63 7.28 -38.90 -0.28 1.34 16 14 F -0.11 -1.89 16.60 2.25 0.04 -1.86 16 15 C 0.14 2.46 3.45 -66.10 -0.23 2.24 16 16 H 0.09 1.45 7.94 -51.93 -0.41 1.04 16 17 C -0.16 -3.38 6.39 -24.58 -0.16 -3.54 16 18 C 0.16 4.11 5.89 -2.53 -0.01 4.10 16 19 N -0.60 -16.29 3.39 -170.07 -0.58 -16.87 16 20 C -0.22 -6.37 10.27 -15.06 -0.15 -6.53 16 21 H 0.08 2.15 7.83 -52.48 -0.41 1.73 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.47 16 23 N -0.92 -28.21 10.09 55.49 0.56 -27.65 16 24 Si 0.91 23.13 29.55 -169.99 -5.02 18.10 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 C 0.13 3.00 6.52 -3.06 -0.02 2.98 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.68 8.07 -51.93 -0.42 0.27 16 33 H 0.08 0.67 4.41 -51.93 -0.23 0.44 16 34 H 0.15 1.09 7.57 -52.48 -0.40 0.70 16 35 H 0.15 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.43 7.62 -51.93 -0.40 0.03 16 38 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.09 2.07 5.62 -51.93 -0.29 1.78 16 41 H 0.11 3.16 5.87 -51.93 -0.30 2.85 16 42 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.03 0.74 6.44 -51.93 -0.33 0.40 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -35.73 368.35 -8.31 -44.03 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -6.13 Total: -3.38 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -2.41 Total: 3.74 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.44 Total: -53.87 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.07 Total: -10.85 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.07 Total: -3.33 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.73 -8.31 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033962813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.991 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds