Wall clock time and date at job start Tue Mar 31 2020 21:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.39009 * 120.00274 * 180.02562 * 2 1 3 5 5 C 1.39145 * 119.69941 * 4.72768 * 4 2 1 6 6 C 1.38302 * 119.09055 * 179.71125 * 5 4 2 7 7 C 1.50696 * 120.74456 * 180.30201 * 6 5 4 8 8 N 1.46903 * 109.47164 * 270.25236 * 7 6 5 9 9 C 1.46891 * 111.00174 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47324 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.47211 * 180.02562 * 10 9 8 12 12 C 1.34777 * 119.99981 * 179.97438 * 11 10 9 13 13 O 1.21278 * 119.99845 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99871 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.47061 * 180.02562 * 14 12 11 16 16 C 1.76194 * 100.00064 * 180.02562 * 15 14 12 17 17 H 1.07997 * 120.00145 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99945 * 180.02562 * 16 15 14 19 19 N 1.31635 * 120.00079 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99966 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47473 * 59.99866 * 20 18 16 22 22 H 1.48508 * 109.47108 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47160 * 299.99489 * 20 18 16 24 24 C 1.38884 * 118.50541 * 0.54952 * 6 5 4 25 25 C 1.38016 * 119.33092 * 359.72990 * 24 6 5 26 26 N 1.31978 * 120.85748 * 359.97438 * 25 24 6 27 27 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 28 28 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 29 29 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 30 30 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 31 31 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 32 32 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 33 33 H 1.07990 * 120.45313 * 359.97397 * 5 4 2 34 34 H 1.08997 * 109.47174 * 30.25286 * 7 6 5 35 35 H 1.09000 * 109.46894 * 150.25522 * 7 6 5 36 36 H 1.00907 * 110.99991 * 56.04547 * 8 7 6 37 37 H 1.08999 * 109.47577 * 300.00017 * 9 8 7 38 38 H 1.09005 * 109.47472 * 60.00277 * 9 8 7 39 39 H 1.08998 * 109.47138 * 299.99781 * 10 9 8 40 40 H 1.08998 * 109.47124 * 60.00226 * 10 9 8 41 41 H 0.97001 * 120.00070 * 359.97438 * 11 10 9 42 42 H 1.08998 * 109.47122 * 300.00212 * 14 12 11 43 43 H 1.08998 * 109.46771 * 60.00431 * 14 12 11 44 44 H 0.96999 * 119.99604 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.33189 * 179.75282 * 24 6 5 46 46 H 1.08000 * 119.57264 * 179.97438 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2038 -0.0005 5 6 1.4617 -2.4031 -0.1007 6 6 2.1663 -3.5932 -0.1061 7 6 1.4482 -4.9131 -0.2198 8 7 1.1104 -5.4041 1.1230 9 6 0.4083 -6.6923 1.0513 10 6 0.0733 -7.1700 2.4657 11 7 -0.6264 -8.4551 2.3942 12 6 -1.0218 -9.0710 3.5260 13 8 -0.7986 -8.5612 4.6035 14 6 -1.7421 -10.3927 3.4524 15 16 -2.1382 -10.9579 5.1257 16 6 -2.9499 -12.4764 4.7516 17 1 -3.0671 -12.7871 3.7240 18 6 -3.4395 -13.2726 5.7776 19 7 -3.2970 -12.8936 7.0301 20 14 -4.3007 -14.8821 5.3810 21 1 -3.3679 -15.7752 4.6478 22 1 -4.7260 -15.5400 6.6426 23 1 -5.4924 -14.6111 4.5374 24 6 3.5502 -3.5445 0.0009 25 6 4.1778 -2.3196 0.1030 26 7 3.4802 -1.1992 0.0995 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 0.8900 0.5139 29 1 -0.3633 -0.8900 0.5139 30 1 1.4892 2.0973 0.0005 31 1 2.8242 1.3264 0.8899 32 1 2.8241 1.3265 -0.8900 33 1 0.3845 -2.4044 -0.1775 34 1 0.5343 -4.7809 -0.7988 35 1 2.0934 -5.6359 -0.7192 36 1 0.5660 -4.7229 1.6307 37 1 -0.5129 -6.5729 0.4809 38 1 1.0466 -7.4273 0.5609 39 1 0.9942 -7.2895 3.0365 40 1 -0.5652 -6.4350 2.9558 41 1 -0.8052 -8.8628 1.5324 42 1 -2.6632 -10.2732 2.8821 43 1 -1.1037 -11.1275 2.9619 44 1 -3.6389 -13.4504 7.7471 45 1 4.1294 -4.4561 0.0038 46 1 5.2537 -2.2772 0.1867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123787666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:00 Heat of formation + Delta-G solvation = 11.829855 kcal Electronic energy + Delta-G solvation = -24724.211115 eV Core-core repulsion = 20968.285843 eV Total energy + Delta-G solvation = -3755.925272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68432 -39.20289 -37.47551 -36.62276 -34.62378 -32.80641 -32.42558 -30.76933 -30.11883 -28.82319 -27.88770 -25.77341 -25.48014 -25.01888 -22.85231 -22.38084 -21.04196 -20.36110 -17.91769 -17.57988 -17.13545 -16.37629 -16.22425 -16.03313 -15.96782 -15.71361 -15.17890 -15.01298 -14.80786 -14.70560 -14.53092 -14.10168 -13.85146 -13.53165 -13.41673 -13.06934 -13.04667 -12.80663 -12.56852 -12.52870 -12.32527 -12.18480 -11.91254 -11.76451 -11.46816 -11.04466 -11.03723 -10.77056 -10.32507 -9.95494 -9.82508 -9.74583 -9.42220 -9.06279 -8.91080 -8.88884 -8.23806 -7.93654 -6.49916 -6.21266 -3.92070 0.92773 1.11796 2.51952 2.96575 3.09992 3.23540 3.26142 3.29320 3.49833 3.68656 4.06333 4.20693 4.21235 4.30013 4.46622 4.65159 4.70594 4.74652 4.82761 4.87569 4.92486 4.95046 5.12071 5.13739 5.15025 5.18647 5.20843 5.21841 5.23484 5.43060 5.47320 5.57949 5.60956 5.75098 5.88132 5.90526 6.09068 6.13384 6.23859 6.44255 6.50772 6.60762 6.88460 6.97264 7.59289 7.68704 7.83882 8.35117 8.60893 9.23796 10.86099 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029672 B = 0.001388 C = 0.001368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.412956 B =20161.402719 C =20458.182691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.621 5.621 3 C 0.107 3.893 4 C 0.399 3.601 5 C -0.232 4.232 6 C 0.001 3.999 7 C 0.099 3.901 8 N -0.679 5.679 9 C 0.050 3.950 10 C 0.123 3.877 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.868 5.868 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C -0.210 4.210 25 C 0.146 3.854 26 N -0.542 5.542 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.128 0.872 34 H 0.043 0.957 35 H 0.088 0.912 36 H 0.346 0.654 37 H 0.038 0.962 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.269 0.731 45 H 0.133 0.867 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.393 25.031 -20.705 34.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.336 5.336 3 C -0.036 4.036 4 C 0.165 3.835 5 C -0.258 4.258 6 C -0.007 4.007 7 C -0.030 4.030 8 N -0.311 5.311 9 C -0.080 4.080 10 C -0.002 4.002 11 N -0.395 5.395 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.304 4.304 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.200 1.200 24 C -0.233 4.233 25 C -0.011 4.011 26 N -0.260 5.260 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.146 0.854 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.165 0.835 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 45 H 0.151 0.849 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.667 26.530 -18.523 34.395 hybrid contribution -2.198 -2.264 -2.308 3.910 sum 9.469 24.265 -20.831 33.353 Atomic orbital electron populations 1.21724 0.78407 1.03139 1.01473 1.46186 1.05044 1.03124 1.79250 1.21483 0.96378 0.83707 1.02028 1.18258 0.88452 0.85638 0.91128 1.21289 1.00602 0.91485 1.12381 1.19862 0.93818 0.93870 0.93177 1.20886 0.98598 0.92972 0.90527 1.60306 1.49689 1.05155 1.15909 1.22119 0.97061 0.91955 0.96826 1.21126 0.97657 0.85422 0.95986 1.45895 1.61409 1.22866 1.09280 1.20300 0.78258 0.86130 0.83511 1.90711 1.54305 1.65864 1.28092 1.23529 1.02297 0.96088 1.08466 1.85412 1.74535 1.24902 0.98470 1.22829 1.43318 1.06785 0.95586 0.90976 1.24988 0.95683 0.98433 0.94426 1.70011 1.43671 1.37848 0.98740 0.86226 0.79607 0.81833 0.77830 1.19937 1.20799 1.19959 1.21730 0.94481 0.99421 1.07653 1.22407 0.99564 0.86823 0.92349 1.67162 1.06192 1.32124 1.20488 0.93024 0.90932 0.91145 0.91354 0.92408 0.92702 0.85375 0.93849 0.89403 0.83547 0.94404 0.90045 0.90593 0.91818 0.76901 0.89241 0.89171 0.92121 0.84915 0.82758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.45 10.03 59.85 0.60 1.05 16 2 N -0.62 -4.70 3.39 -189.66 -0.64 -5.34 16 3 C 0.11 0.66 10.19 59.85 0.61 1.27 16 4 C 0.40 3.75 7.37 -155.02 -1.14 2.61 16 5 C -0.23 -1.89 8.89 -39.22 -0.35 -2.24 16 6 C 0.00 0.01 5.43 -104.36 -0.57 -0.56 16 7 C 0.10 0.66 5.86 -4.98 -0.03 0.63 16 8 N -0.68 -5.34 6.49 -115.06 -0.75 -6.08 16 9 C 0.05 0.39 5.80 -3.83 -0.02 0.37 16 10 C 0.12 1.40 5.93 -4.04 -0.02 1.37 16 11 N -0.74 -9.58 5.56 -60.29 -0.33 -9.92 16 12 C 0.53 9.91 7.85 -10.98 -0.09 9.82 16 13 O -0.52 -11.84 15.86 5.56 0.09 -11.76 16 14 C -0.15 -3.07 6.16 36.01 0.22 -2.84 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 19 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 20 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 21 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C -0.21 -1.67 9.81 -39.42 -0.39 -2.06 16 25 C 0.15 1.23 11.17 -17.57 -0.20 1.03 16 26 N -0.54 -5.51 9.57 -12.44 -0.12 -5.63 16 27 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 29 H 0.07 0.31 6.37 -51.93 -0.33 -0.02 16 30 H 0.07 0.26 7.79 -51.93 -0.40 -0.15 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.13 0.83 6.26 -52.49 -0.33 0.50 16 34 H 0.04 0.26 8.10 -51.93 -0.42 -0.17 16 35 H 0.09 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.35 2.68 8.72 -39.29 -0.34 2.33 16 37 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.40 3.86 8.47 -40.82 -0.35 3.51 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 46 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -36.51 402.27 -10.57 -47.08 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.20 Total: 1.07 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.17 Total: -2.53 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -1.11 Total: -52.41 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.51 -10.57 -47.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.913 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds