Wall clock time and date at job start Tue Mar 31 2020 20:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47204 * 2 1 4 4 C 1.42894 * 113.99941 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47181 * 180.02562 * 4 3 2 6 6 O 1.42903 * 109.47217 * 65.00004 * 5 4 3 7 7 C 1.42897 * 114.00089 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46701 * 180.02562 * 7 6 5 9 9 N 1.46501 * 109.47259 * 65.00098 * 8 7 6 10 10 C 1.34776 * 119.99995 * 179.97438 * 9 8 7 11 11 O 1.21596 * 120.00375 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00167 * 180.02562 * 10 9 8 13 13 C 1.40022 * 120.00176 * 175.49980 * 12 10 9 14 14 C 1.38912 * 120.00259 * 215.12813 * 13 12 10 15 15 C 1.37999 * 120.00243 * 180.02562 * 14 13 12 16 16 C 1.38905 * 120.00326 * 359.97438 * 15 14 13 17 17 O 1.35779 * 119.99953 * 180.02562 * 16 15 14 18 18 C 1.34812 * 117.00320 * 5.34545 * 17 16 15 19 19 H 1.08001 * 119.99835 * 354.96562 * 18 17 16 20 20 C 1.38630 * 120.00108 * 174.96458 * 18 17 16 21 21 N 1.31574 * 120.00225 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00104 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47089 * 90.00126 * 22 20 18 24 24 H 1.48495 * 109.47055 * 210.00290 * 22 20 18 25 25 H 1.48507 * 109.46941 * 329.99872 * 22 20 18 26 26 C 1.38897 * 119.99836 * 0.27797 * 16 15 14 27 27 C 1.38013 * 120.00318 * 359.44978 * 26 16 15 28 28 H 1.09007 * 109.47377 * 59.99456 * 1 2 3 29 29 H 1.08996 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46770 * 300.00054 * 1 2 3 31 31 H 1.09003 * 109.47111 * 240.00370 * 2 1 3 32 32 H 1.08991 * 109.47438 * 120.00134 * 2 1 3 33 33 H 1.09004 * 109.47017 * 60.00824 * 4 3 2 34 34 H 1.09000 * 109.47494 * 300.00464 * 4 3 2 35 35 H 1.09001 * 109.47598 * 305.00391 * 5 4 3 36 36 H 1.09000 * 109.47450 * 185.00198 * 5 4 3 37 37 H 1.08997 * 109.47221 * 60.00394 * 7 6 5 38 38 H 1.08996 * 109.46936 * 300.00090 * 7 6 5 39 39 H 1.08994 * 109.47469 * 304.99778 * 8 7 6 40 40 H 1.09009 * 109.46946 * 185.00053 * 8 7 6 41 41 H 0.96993 * 120.00254 * 0.02562 * 9 8 7 42 42 H 0.96997 * 119.99675 * 355.49071 * 12 10 9 43 43 H 1.08007 * 119.99575 * 359.97438 * 14 13 12 44 44 H 1.07999 * 120.00161 * 179.97438 * 15 14 13 45 45 H 0.97000 * 120.00644 * 179.97438 * 21 20 18 46 46 H 1.08006 * 120.00323 * 179.69943 * 26 16 15 47 47 H 1.07997 * 120.00593 * 180.27151 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9384 0.0012 6 8 3.3976 3.5451 1.2223 7 6 3.7184 4.9338 1.3248 8 6 3.2166 5.4754 2.6648 9 7 3.9462 4.8274 3.7576 10 6 3.6705 5.1505 5.0367 11 8 2.8160 5.9795 5.2838 12 7 4.3421 4.5548 6.0420 13 6 4.1235 4.9572 7.3652 14 6 5.1750 4.9608 8.2729 15 6 4.9594 5.3569 9.5771 16 6 3.6910 5.7525 9.9822 17 8 3.4791 6.1426 11.2653 18 6 4.5607 6.2293 12.0654 19 1 5.5280 5.9156 11.7015 20 6 4.4313 6.7210 13.3550 21 7 5.4870 6.8061 14.1357 22 14 2.7581 7.2629 13.9846 23 1 2.0718 6.1102 14.6214 24 1 2.9327 8.3482 14.9830 25 1 1.9399 7.7611 12.8499 26 6 2.6384 5.7439 9.0760 27 6 2.8551 5.3531 7.7702 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 3.8340 0.9765 -0.8893 34 1 3.8333 0.9767 0.8907 35 1 3.3499 3.4418 -0.8406 36 1 4.9082 3.0255 -0.0880 37 1 3.2403 5.4782 0.5105 38 1 4.7989 5.0627 1.2629 39 1 2.1515 5.2668 2.7652 40 1 3.3814 6.5522 2.7062 41 1 4.6281 4.1664 3.5605 42 1 4.9768 3.8472 5.8488 43 1 6.1612 4.6528 7.9580 44 1 5.7769 5.3593 10.2829 45 1 5.3967 7.1505 15.0380 46 1 1.6511 6.0468 9.3922 47 1 2.0376 5.3506 7.0645 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334523721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:47:35 Heat of formation + Delta-G solvation = -115.713383 kcal Electronic energy + Delta-G solvation = -27763.634267 eV Core-core repulsion = 23527.132683 eV Total energy + Delta-G solvation = -4236.501583 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.172 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.32008 -39.08958 -38.79507 -37.87621 -36.72693 -34.76959 -33.94316 -32.32302 -32.21644 -30.35218 -30.22323 -28.90168 -27.57324 -25.15834 -23.21752 -23.11546 -23.04700 -22.25216 -21.52636 -20.47058 -18.57359 -17.70533 -17.62622 -17.41276 -17.33783 -16.80978 -16.20852 -16.01962 -15.46520 -15.33219 -14.85268 -14.71771 -14.29715 -14.10546 -13.78494 -13.73053 -13.64075 -13.53199 -13.08447 -12.98112 -12.70892 -12.43369 -12.26869 -12.18361 -11.97619 -11.89181 -11.74230 -11.61101 -11.52412 -11.36068 -10.91524 -10.70003 -10.15920 -10.13666 -10.04839 -9.91776 -9.60771 -9.23677 -9.13328 -8.70479 -8.21469 -6.96677 -6.36672 -4.02300 2.13013 2.22053 2.74033 3.11917 3.20866 3.26670 3.29971 3.37129 3.46279 4.27102 4.29183 4.42164 4.56458 4.57780 4.63373 4.65663 4.75525 4.78256 4.90515 4.91789 4.94444 4.95084 4.96906 5.17135 5.18363 5.32764 5.42051 5.50099 5.55232 5.61439 5.72711 5.79860 6.12005 6.18138 6.26131 6.36324 6.66215 6.71609 6.78991 6.80138 6.86326 7.18724 7.25209 7.30158 7.66931 7.84209 8.06798 8.09628 8.70586 8.99088 9.62643 10.71034 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.021046 B = 0.001653 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.068750 B =16931.229322 C =17384.573718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.381 6.381 4 C 0.064 3.936 5 C 0.064 3.936 6 O -0.376 6.376 7 C 0.050 3.950 8 C 0.143 3.857 9 N -0.743 5.743 10 C 0.700 3.300 11 O -0.577 6.577 12 N -0.676 5.676 13 C 0.064 3.936 14 C -0.095 4.095 15 C -0.206 4.206 16 C 0.150 3.850 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.882 5.882 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.259 1.259 26 C -0.177 4.177 27 C -0.070 4.070 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.397 0.603 42 H 0.398 0.602 43 H 0.112 0.888 44 H 0.137 0.863 45 H 0.279 0.721 46 H 0.120 0.880 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.632 -11.688 -31.697 33.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.301 6.301 4 C -0.013 4.013 5 C -0.013 4.013 6 O -0.295 6.295 7 C -0.027 4.027 8 C 0.019 3.981 9 N -0.400 5.400 10 C 0.401 3.599 11 O -0.454 6.454 12 N -0.324 5.324 13 C -0.029 4.029 14 C -0.116 4.116 15 C -0.226 4.226 16 C 0.098 3.902 17 O -0.124 6.124 18 C -0.463 4.463 19 H 0.123 0.877 20 C -0.140 4.140 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.209 1.209 25 H -0.183 1.183 26 C -0.197 4.197 27 C -0.090 4.090 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.230 0.770 42 H 0.232 0.768 43 H 0.130 0.870 44 H 0.155 0.845 45 H 0.089 0.911 46 H 0.138 0.862 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.771 -10.713 -31.029 32.943 hybrid contribution 0.657 -0.573 -0.083 0.875 sum -2.114 -11.285 -31.112 33.163 Atomic orbital electron populations 1.21742 0.93597 1.02271 1.03323 1.22468 0.95849 0.83713 0.99933 1.87974 1.20348 1.26359 1.95380 1.22500 0.82432 0.95494 1.00867 1.22521 0.98254 0.92723 0.87806 1.88025 1.81052 1.22625 1.37837 1.22803 0.99610 0.82821 0.97505 1.21186 0.97337 0.96755 0.82850 1.44973 1.43782 1.47026 1.04197 1.15941 0.82138 0.81430 0.80416 1.90927 1.34942 1.36678 1.82897 1.42308 1.45900 1.39796 1.04358 1.17105 0.94102 1.09331 0.82326 1.20508 0.96436 1.01345 0.93268 1.21065 0.98076 1.07162 0.96275 1.19149 0.93082 0.93286 0.84672 1.83583 1.35788 1.76187 1.16806 1.20752 0.87667 1.43736 0.94185 0.87674 1.24454 0.98813 0.95867 0.94905 1.69654 1.28993 1.44745 1.08621 0.86182 0.83092 0.78652 0.79017 1.19932 1.20895 1.18274 1.20155 0.98326 1.09087 0.92142 1.20793 0.95629 0.98015 0.94580 0.91926 0.91091 0.91584 0.93601 0.93295 0.91915 0.92361 0.92354 0.91732 0.91420 0.92577 0.90585 0.89967 0.76979 0.76763 0.86982 0.84543 0.91141 0.86180 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.28 37.16 0.38 -0.53 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.38 -3.39 10.31 -40.08 -0.41 -3.80 16 4 C 0.06 0.39 6.32 37.16 0.23 0.63 16 5 C 0.06 0.37 6.32 37.16 0.23 0.60 16 6 O -0.38 -3.14 10.25 -40.08 -0.41 -3.55 16 7 C 0.05 0.32 6.07 37.16 0.23 0.54 16 8 C 0.14 1.32 6.06 -4.04 -0.02 1.30 16 9 N -0.74 -7.74 5.51 -65.22 -0.36 -8.10 16 10 C 0.70 10.37 8.41 -86.91 -0.73 9.64 16 11 O -0.58 -10.96 13.78 5.28 0.07 -10.89 16 12 N -0.68 -9.48 5.35 -14.18 -0.08 -9.56 16 13 C 0.06 1.15 6.30 -83.62 -0.53 0.63 16 14 C -0.09 -1.72 9.96 -39.42 -0.39 -2.12 16 15 C -0.21 -4.47 9.16 -39.42 -0.36 -4.83 16 16 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 17 O -0.22 -5.89 8.58 0.01 0.00 -5.89 16 18 C -0.39 -11.05 9.94 30.88 0.31 -10.74 16 19 H 0.11 3.03 5.43 -52.49 -0.28 2.75 16 20 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 21 N -0.88 -25.69 13.96 55.48 0.77 -24.91 16 22 Si 0.90 22.10 28.62 -169.99 -4.86 17.23 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 26 C -0.18 -3.80 9.98 -39.42 -0.39 -4.19 16 27 C -0.07 -1.38 8.69 -39.41 -0.34 -1.73 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.76 8.14 -51.92 -0.42 0.33 16 41 H 0.40 3.08 8.49 -40.82 -0.35 2.73 16 42 H 0.40 4.08 8.84 -40.82 -0.36 3.72 16 43 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.14 3.06 5.63 -52.49 -0.30 2.77 16 45 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 46 H 0.12 2.42 8.06 -52.48 -0.42 2.00 16 47 H 0.13 2.61 6.22 -52.49 -0.33 2.28 16 LS Contribution 398.85 15.07 6.01 6.01 Total: -1.00 -34.99 398.85 -7.85 -42.84 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.09 Total: 5.80 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.50 Total: -5.18 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: 0.34 Total: -42.57 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.75 Total: -24.14 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.86 Total: 17.23 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.99 -7.85 -42.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334523721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.875 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds