Wall clock time and date at job start Tue Mar 31 2020 21:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36932 * 119.99721 * 2 1 4 4 H 1.08001 * 120.00087 * 202.74400 * 3 2 1 5 5 C 1.38814 * 120.00173 * 22.73833 * 3 2 1 6 6 N 1.31613 * 119.99959 * 13.37269 * 5 3 2 7 7 Si 1.86803 * 119.99938 * 193.37307 * 5 3 2 8 8 H 1.48500 * 109.47164 * 60.00025 * 7 5 3 9 9 H 1.48493 * 109.47172 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46951 * 299.99960 * 7 5 3 11 11 C 1.46499 * 119.99891 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47165 * 90.00113 * 11 2 1 13 13 H 1.09003 * 110.88705 * 302.57097 * 12 11 2 14 14 C 1.55157 * 111.00752 * 66.44968 * 12 11 2 15 15 C 1.54323 * 102.94418 * 153.57456 * 14 12 11 16 16 N 1.47020 * 107.27163 * 337.81173 * 15 14 12 17 17 C 1.34779 * 125.64682 * 178.90166 * 16 15 14 18 18 O 1.21284 * 119.99526 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00154 * 0.02708 * 17 16 15 20 20 C 1.50691 * 109.47090 * 179.97438 * 19 17 16 21 21 C 1.38421 * 120.02721 * 269.71465 * 20 19 17 22 22 F 1.35105 * 120.00918 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.97780 * 179.78912 * 21 20 19 24 24 C 1.38203 * 120.02202 * 0.49597 * 23 21 20 25 25 C 1.38209 * 120.05590 * 359.73813 * 24 23 21 26 26 C 1.38423 * 120.02642 * 89.99762 * 20 19 17 27 27 F 1.35097 * 120.01386 * 0.02562 * 26 20 19 28 28 C 1.47426 * 108.70063 * 359.16207 * 16 15 14 29 29 H 1.08999 * 109.47004 * 275.12893 * 1 2 3 30 30 H 1.08994 * 109.47111 * 35.13023 * 1 2 3 31 31 H 1.09003 * 109.46725 * 155.13630 * 1 2 3 32 32 H 0.97003 * 119.99825 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.47193 * 329.99813 * 11 2 1 34 34 H 1.09002 * 109.46756 * 209.99843 * 11 2 1 35 35 H 1.09011 * 110.71826 * 35.21247 * 14 12 11 36 36 H 1.09002 * 110.72065 * 271.94413 * 14 12 11 37 37 H 1.08998 * 109.88051 * 218.38979 * 15 14 12 38 38 H 1.09001 * 109.87897 * 97.22788 * 15 14 12 39 39 H 1.09008 * 109.46942 * 299.99742 * 19 17 16 40 40 H 1.09003 * 109.47497 * 59.99589 * 19 17 16 41 41 H 1.07993 * 119.98474 * 180.23281 * 23 21 20 42 42 H 1.08005 * 119.97147 * 179.76678 * 24 23 21 43 43 H 1.07997 * 119.99385 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.36147 * 142.73971 * 28 16 15 45 45 H 1.08995 * 110.36920 * 265.06248 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2223 -0.3616 5 6 1.5365 2.3413 0.4647 6 7 0.4111 2.2621 1.1424 7 14 2.3087 4.0086 0.1280 8 1 2.4092 4.2206 -1.3383 9 1 1.4655 5.0746 0.7261 10 1 3.6658 4.0560 0.7292 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5156 -1.8049 -1.9908 14 6 3.4224 -0.7355 -2.1594 15 6 4.0765 -1.6276 -3.2354 16 7 3.9384 -3.0218 -2.7896 17 6 4.3642 -4.1081 -3.4642 18 8 4.1960 -5.2154 -2.9988 19 6 5.0495 -3.9468 -4.7966 20 6 5.4238 -5.3031 -5.3363 21 6 6.6585 -5.8517 -5.0353 22 9 7.5284 -5.1716 -4.2568 23 6 6.9997 -7.1000 -5.5282 24 6 6.1120 -7.7935 -6.3289 25 6 4.8809 -7.2447 -6.6342 26 6 4.5356 -5.9987 -6.1384 27 9 3.3327 -5.4618 -6.4382 28 6 3.2513 -3.0350 -1.4853 29 1 -0.3633 0.0919 1.0235 30 1 -0.3633 0.8404 -0.5913 31 1 -0.3633 -0.9325 -0.4321 32 1 -0.0176 3.0696 1.4667 33 1 1.6085 -2.0281 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 4.1722 -0.3565 -1.4648 36 1 2.8727 0.0850 -2.6207 37 1 5.1316 -1.3735 -3.3364 38 1 3.5673 -1.4914 -4.1895 39 1 4.3746 -3.4512 -5.4946 40 1 5.9495 -3.3447 -4.6719 41 1 7.9614 -7.5298 -5.2903 42 1 6.3805 -8.7654 -6.7160 43 1 4.1878 -7.7877 -7.2596 44 1 2.5760 -3.8882 -1.4210 45 1 3.9784 -3.0636 -0.6737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481498521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:54 Heat of formation + Delta-G solvation = -74.585877 kcal Electronic energy + Delta-G solvation = -29133.493620 eV Core-core repulsion = 24787.687943 eV Total energy + Delta-G solvation = -4345.805677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.28640 -49.27960 -40.14126 -39.03370 -37.55832 -35.34258 -33.38256 -32.20193 -30.62908 -30.52007 -29.18408 -28.09376 -25.95468 -25.32963 -23.24260 -23.21267 -22.23602 -21.35471 -19.65178 -19.16814 -18.42813 -17.70018 -17.26430 -16.89217 -16.35572 -16.11539 -15.91790 -15.82379 -15.54061 -15.15118 -14.87974 -14.71559 -14.30160 -13.91192 -13.68756 -13.42756 -13.09568 -13.08556 -12.97935 -12.78636 -12.51137 -12.26261 -12.16640 -11.88551 -11.80211 -11.69942 -11.31680 -11.07429 -10.80765 -10.68024 -10.42105 -10.31723 -10.16168 -9.94581 -9.85279 -9.76869 -9.20183 -9.07907 -8.57502 -8.51566 -6.73679 -5.71811 -3.18394 0.60597 0.64369 2.61190 2.86441 3.17931 3.37238 3.42973 3.43699 3.56913 4.05893 4.06838 4.28725 4.43283 4.46644 4.53305 4.78140 4.92748 5.00774 5.04808 5.11425 5.25081 5.40577 5.41958 5.48252 5.53482 5.56892 5.60319 5.67678 5.77795 5.78428 5.87355 5.98627 6.15856 6.25471 6.33102 6.40708 6.53090 6.56189 6.70294 6.77050 6.92386 7.37748 7.57232 7.73623 7.80741 8.15048 8.40048 9.23902 9.87904 10.37486 11.33007 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.002289 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.826190 B =12231.495816 C =12555.568397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.600 5.600 3 C -0.253 4.253 4 H 0.070 0.930 5 C 0.000 4.000 6 N -0.907 5.907 7 Si 0.902 3.098 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.162 3.838 12 C -0.117 4.117 13 H 0.075 0.925 14 C -0.110 4.110 15 C 0.094 3.906 16 N -0.613 5.613 17 C 0.531 3.469 18 O -0.541 6.541 19 C -0.100 4.100 20 C -0.135 4.135 21 C 0.142 3.858 22 F -0.128 7.128 23 C -0.164 4.164 24 C -0.063 4.063 25 C -0.164 4.164 26 C 0.142 3.858 27 F -0.128 7.128 28 C 0.110 3.890 29 H 0.030 0.970 30 H 0.040 0.960 31 H -0.003 1.003 32 H 0.252 0.748 33 H 0.039 0.961 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.143 0.857 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.617 -17.287 -16.827 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.322 5.322 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.198 4.198 6 N -0.552 5.552 7 Si 0.732 3.268 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.210 1.210 11 C 0.034 3.966 12 C -0.139 4.139 13 H 0.093 0.907 14 C -0.147 4.147 15 C -0.029 4.029 16 N -0.347 5.347 17 C 0.319 3.681 18 O -0.419 6.419 19 C -0.140 4.140 20 C -0.137 4.137 21 C 0.122 3.878 22 F -0.106 7.106 23 C -0.183 4.183 24 C -0.081 4.081 25 C -0.183 4.183 26 C 0.123 3.877 27 F -0.106 7.106 28 C -0.012 4.012 29 H 0.049 0.951 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.161 0.839 44 H 0.091 0.909 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.409 -17.723 -16.497 26.766 hybrid contribution 0.258 1.338 -0.109 1.367 sum 11.668 -16.384 -16.605 26.083 Atomic orbital electron populations 1.20790 0.82703 0.95320 0.99448 1.43852 1.01761 1.00558 1.86023 1.19147 0.98067 0.85410 1.35593 0.91240 1.25030 0.97952 0.98480 0.98325 1.70061 1.19504 1.27185 1.38485 0.86383 0.78445 0.84082 0.77902 1.21130 1.21728 1.20983 1.20609 0.96387 0.88638 0.90967 1.23131 0.97378 0.91903 1.01518 0.90695 1.22566 0.98510 0.97317 0.96349 1.22269 1.00641 0.80881 0.99137 1.48558 1.58086 1.06267 1.21776 1.19890 0.78945 0.83566 0.85729 1.90706 1.57137 1.24524 1.69493 1.20493 1.03118 0.94555 0.95801 1.19314 0.94101 0.98336 1.01926 1.17163 0.87131 0.91079 0.92399 1.91531 1.67786 1.79294 1.72034 1.21177 1.02247 0.93786 1.01079 1.20838 0.92043 0.99613 0.95604 1.21185 0.98895 0.94616 1.03593 1.17167 0.81008 0.92511 0.97045 1.91532 1.41973 1.85814 1.91284 1.22314 0.95527 0.99343 0.84024 0.95127 0.94153 0.98444 0.93751 0.94297 0.93175 0.90478 0.89353 0.91687 0.91695 0.87153 0.87169 0.83930 0.83862 0.83918 0.90918 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 8.98 59.85 0.54 4.45 16 2 N -0.60 -14.39 2.87 -181.12 -0.52 -14.91 16 3 C -0.25 -6.55 8.98 -15.06 -0.14 -6.69 16 4 H 0.07 1.72 6.69 -52.49 -0.35 1.37 16 5 C 0.00 0.01 5.09 -17.43 -0.09 -0.08 16 6 N -0.91 -26.10 10.71 55.49 0.59 -25.51 16 7 Si 0.90 21.29 29.57 -169.99 -5.03 16.26 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 C 0.16 3.16 5.18 -4.04 -0.02 3.14 16 12 C -0.12 -1.93 3.28 -88.59 -0.29 -2.22 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 14 C -0.11 -1.68 5.14 -24.90 -0.13 -1.81 16 15 C 0.09 1.17 6.49 -3.07 -0.02 1.15 16 16 N -0.61 -8.89 3.33 -170.66 -0.57 -9.46 16 17 C 0.53 7.97 7.84 -10.99 -0.09 7.88 16 18 O -0.54 -9.96 16.29 5.55 0.09 -9.87 16 19 C -0.10 -1.14 4.67 -29.04 -0.14 -1.27 16 20 C -0.13 -1.55 4.38 -104.49 -0.46 -2.01 16 21 C 0.14 1.53 7.24 -39.43 -0.29 1.25 16 22 F -0.13 -1.50 16.47 2.25 0.04 -1.46 16 23 C -0.16 -1.32 10.03 -39.51 -0.40 -1.72 16 24 C -0.06 -0.42 10.04 -39.60 -0.40 -0.82 16 25 C -0.16 -1.33 10.03 -39.50 -0.40 -1.73 16 26 C 0.14 1.55 7.24 -39.42 -0.29 1.26 16 27 F -0.13 -1.52 16.48 2.25 0.04 -1.48 16 28 C 0.11 1.69 6.37 -2.65 -0.02 1.68 16 29 H 0.03 0.81 7.34 -51.93 -0.38 0.42 16 30 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 31 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 32 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 34 H 0.05 0.98 8.00 -51.93 -0.42 0.56 16 35 H 0.08 1.23 7.39 -51.92 -0.38 0.85 16 36 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.11 1.09 7.64 -51.92 -0.40 0.69 16 40 H 0.11 1.07 7.63 -51.93 -0.40 0.67 16 41 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.14 0.49 8.06 -52.48 -0.42 0.06 16 43 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 44 H 0.07 1.15 8.04 -51.93 -0.42 0.74 16 45 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.02 377.30 -8.74 -40.77 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.47 Total: -2.50 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -2.60 Total: 2.46 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.49 Total: -49.87 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.02 -8.74 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481498521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.817 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds