Wall clock time and date at job start Tue Mar 31 2020 21:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36932 * 119.99721 * 2 1 4 4 H 1.08001 * 120.00087 * 202.74400 * 3 2 1 5 5 C 1.38814 * 120.00173 * 22.73833 * 3 2 1 6 6 N 1.31613 * 119.99959 * 13.37269 * 5 3 2 7 7 Si 1.86803 * 119.99938 * 193.37307 * 5 3 2 8 8 H 1.48500 * 109.47164 * 60.00025 * 7 5 3 9 9 H 1.48493 * 109.47172 * 180.02562 * 7 5 3 10 10 H 1.48507 * 109.46951 * 299.99960 * 7 5 3 11 11 C 1.46499 * 119.99891 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47165 * 90.00113 * 11 2 1 13 13 H 1.09003 * 110.88705 * 302.57097 * 12 11 2 14 14 C 1.55157 * 111.00752 * 66.44968 * 12 11 2 15 15 C 1.54323 * 102.94418 * 153.57456 * 14 12 11 16 16 N 1.47020 * 107.27163 * 337.81173 * 15 14 12 17 17 C 1.34779 * 125.64682 * 178.90166 * 16 15 14 18 18 O 1.21284 * 119.99526 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00154 * 0.02708 * 17 16 15 20 20 C 1.50691 * 109.47090 * 179.97438 * 19 17 16 21 21 C 1.38421 * 120.02721 * 269.71465 * 20 19 17 22 22 F 1.35105 * 120.00918 * 0.02562 * 21 20 19 23 23 C 1.38475 * 119.97780 * 179.78912 * 21 20 19 24 24 C 1.38203 * 120.02202 * 0.49597 * 23 21 20 25 25 C 1.38209 * 120.05590 * 359.73813 * 24 23 21 26 26 C 1.38423 * 120.02642 * 89.99762 * 20 19 17 27 27 F 1.35097 * 120.01386 * 0.02562 * 26 20 19 28 28 C 1.47426 * 108.70063 * 359.16207 * 16 15 14 29 29 H 1.08999 * 109.47004 * 275.12893 * 1 2 3 30 30 H 1.08994 * 109.47111 * 35.13023 * 1 2 3 31 31 H 1.09003 * 109.46725 * 155.13630 * 1 2 3 32 32 H 0.97003 * 119.99825 * 180.02562 * 6 5 3 33 33 H 1.08993 * 109.47193 * 329.99813 * 11 2 1 34 34 H 1.09002 * 109.46756 * 209.99843 * 11 2 1 35 35 H 1.09011 * 110.71826 * 35.21247 * 14 12 11 36 36 H 1.09002 * 110.72065 * 271.94413 * 14 12 11 37 37 H 1.08998 * 109.88051 * 218.38979 * 15 14 12 38 38 H 1.09001 * 109.87897 * 97.22788 * 15 14 12 39 39 H 1.09008 * 109.46942 * 299.99742 * 19 17 16 40 40 H 1.09003 * 109.47497 * 59.99589 * 19 17 16 41 41 H 1.07993 * 119.98474 * 180.23281 * 23 21 20 42 42 H 1.08005 * 119.97147 * 179.76678 * 24 23 21 43 43 H 1.07997 * 119.99385 * 180.02562 * 25 24 23 44 44 H 1.09004 * 110.36147 * 142.73971 * 28 16 15 45 45 H 1.08995 * 110.36920 * 265.06248 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1667 1.2223 -0.3616 5 6 1.5365 2.3413 0.4647 6 7 0.4111 2.2621 1.1424 7 14 2.3087 4.0086 0.1280 8 1 2.4092 4.2206 -1.3383 9 1 1.4655 5.0746 0.7261 10 1 3.6658 4.0560 0.7292 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 1 1.5156 -1.8049 -1.9908 14 6 3.4224 -0.7355 -2.1594 15 6 4.0765 -1.6276 -3.2354 16 7 3.9384 -3.0218 -2.7896 17 6 4.3642 -4.1081 -3.4642 18 8 4.1960 -5.2154 -2.9988 19 6 5.0495 -3.9468 -4.7966 20 6 5.4238 -5.3031 -5.3363 21 6 6.6585 -5.8517 -5.0353 22 9 7.5284 -5.1716 -4.2568 23 6 6.9997 -7.1000 -5.5282 24 6 6.1120 -7.7935 -6.3289 25 6 4.8809 -7.2447 -6.6342 26 6 4.5356 -5.9987 -6.1384 27 9 3.3327 -5.4618 -6.4382 28 6 3.2513 -3.0350 -1.4853 29 1 -0.3633 0.0919 1.0235 30 1 -0.3633 0.8404 -0.5913 31 1 -0.3633 -0.9325 -0.4321 32 1 -0.0176 3.0696 1.4667 33 1 1.6085 -2.0281 0.5147 34 1 3.1500 -1.1381 0.5143 35 1 4.1722 -0.3565 -1.4648 36 1 2.8727 0.0850 -2.6207 37 1 5.1316 -1.3735 -3.3364 38 1 3.5673 -1.4914 -4.1895 39 1 4.3746 -3.4512 -5.4946 40 1 5.9495 -3.3447 -4.6719 41 1 7.9614 -7.5298 -5.2903 42 1 6.3805 -8.7654 -6.7160 43 1 4.1878 -7.7877 -7.2596 44 1 2.5760 -3.8882 -1.4210 45 1 3.9784 -3.0636 -0.6737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481498521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:53 Heat of formation + Delta-G solvation = -91.627302 kcal Electronic energy + Delta-G solvation = -29134.232592 eV Core-core repulsion = 24787.687943 eV Total energy + Delta-G solvation = -4346.544648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -50.07808 -50.07032 -41.26681 -39.81353 -38.83820 -37.07610 -34.31124 -33.73769 -32.15515 -31.27528 -30.40836 -29.08373 -27.89701 -26.86875 -24.40995 -23.89894 -23.22030 -22.93855 -21.07163 -20.28341 -19.16851 -18.75366 -18.46164 -18.34156 -17.39102 -17.03924 -16.85694 -16.74310 -16.61277 -16.34792 -16.15153 -15.70897 -15.47867 -15.19367 -15.12300 -14.76797 -14.48119 -14.41735 -13.93783 -13.77366 -13.76436 -13.42943 -13.22920 -13.02055 -12.94690 -12.78114 -12.65014 -12.60646 -12.39627 -12.31335 -12.16675 -12.01329 -11.72869 -11.59237 -11.39804 -11.14078 -10.56926 -9.92480 -9.76140 -9.72067 -8.72359 -7.76505 -5.24761 -0.06917 -0.02668 1.48014 1.50152 1.51800 1.57851 1.89034 2.39947 2.55259 2.87152 3.29813 3.35795 3.39510 3.41106 3.60803 3.68892 3.75075 3.87948 3.96239 4.15262 4.21156 4.28540 4.33036 4.35545 4.42740 4.60377 4.63224 4.79365 4.81839 4.84301 4.86099 4.88770 5.01443 5.03521 5.04744 5.10592 5.19511 5.21278 5.31688 5.41454 5.49162 5.70020 5.75532 5.76935 6.37786 6.44315 7.00260 7.20395 7.92331 8.37857 9.27216 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023727 B = 0.002289 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.826190 B =12231.495816 C =12555.568397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.614 5.614 3 C -0.247 4.247 4 H 0.082 0.918 5 C -0.061 4.061 6 N -0.944 5.944 7 Si 0.964 3.036 8 H -0.276 1.276 9 H -0.302 1.302 10 H -0.276 1.276 11 C 0.162 3.838 12 C -0.105 4.105 13 H 0.067 0.933 14 C -0.107 4.107 15 C 0.100 3.900 16 N -0.616 5.616 17 C 0.526 3.474 18 O -0.581 6.581 19 C -0.094 4.094 20 C -0.157 4.157 21 C 0.117 3.883 22 F -0.140 7.140 23 C -0.161 4.161 24 C -0.051 4.051 25 C -0.161 4.161 26 C 0.115 3.885 27 F -0.141 7.141 28 C 0.117 3.883 29 H 0.002 0.998 30 H 0.015 0.985 31 H 0.026 0.974 32 H 0.245 0.755 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.127 0.873 41 H 0.167 0.833 42 H 0.185 0.815 43 H 0.166 0.834 44 H 0.064 0.936 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.673 -18.702 -18.994 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.337 5.337 3 C -0.377 4.377 4 H 0.099 0.901 5 C -0.255 4.255 6 N -0.591 5.591 7 Si 0.793 3.207 8 H -0.202 1.202 9 H -0.229 1.229 10 H -0.201 1.201 11 C 0.035 3.965 12 C -0.127 4.127 13 H 0.085 0.915 14 C -0.145 4.145 15 C -0.022 4.022 16 N -0.348 5.348 17 C 0.316 3.684 18 O -0.461 6.461 19 C -0.133 4.133 20 C -0.159 4.159 21 C 0.097 3.903 22 F -0.118 7.118 23 C -0.179 4.179 24 C -0.069 4.069 25 C -0.180 4.180 26 C 0.096 3.904 27 F -0.119 7.119 28 C -0.006 4.006 29 H 0.021 0.979 30 H 0.034 0.966 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.142 0.858 40 H 0.145 0.855 41 H 0.184 0.816 42 H 0.202 0.798 43 H 0.184 0.816 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.501 -19.149 -18.694 29.973 hybrid contribution -0.353 1.628 0.557 1.757 sum 13.148 -17.520 -18.136 28.439 Atomic orbital electron populations 1.20522 0.83181 0.95695 0.97497 1.44086 1.01838 1.01685 1.86118 1.19537 0.98366 0.86057 1.33713 0.90076 1.25801 0.98789 1.01869 0.99022 1.70241 1.21179 1.27330 1.40396 0.85383 0.77566 0.79837 0.77939 1.20190 1.22860 1.20137 1.20730 0.95865 0.86954 0.92958 1.22808 0.97641 0.93035 0.99237 0.91457 1.22474 0.97966 0.97143 0.96888 1.22314 1.02191 0.78999 0.98678 1.48629 1.57711 1.07139 1.21362 1.20534 0.78380 0.82848 0.86607 1.90676 1.58767 1.26028 1.70660 1.20496 1.03603 0.95451 0.93750 1.19431 0.94836 0.98711 1.02892 1.17496 0.87158 0.92283 0.93345 1.91493 1.68055 1.79730 1.72541 1.21578 1.03471 0.92652 1.00220 1.21335 0.90789 1.00688 0.94065 1.21579 0.99872 0.93545 1.02978 1.17518 0.80785 0.93796 0.98293 1.91491 1.42712 1.86186 1.91529 1.22130 0.95405 0.98116 0.84996 0.97940 0.96575 0.95506 0.94611 0.93709 0.93230 0.91091 0.90547 0.89168 0.89781 0.85757 0.85547 0.81562 0.79809 0.81640 0.91720 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.65 8.98 127.77 1.15 9.79 16 2 N -0.61 -29.51 2.87 -726.94 -2.09 -31.60 16 3 C -0.25 -12.74 8.98 84.03 0.75 -11.99 16 4 H 0.08 3.93 6.69 -2.91 -0.02 3.91 16 5 C -0.06 -3.31 5.09 84.86 0.43 -2.88 16 6 N -0.94 -55.65 10.71 21.65 0.23 -55.42 16 7 Si 0.96 43.97 29.57 68.60 2.03 46.00 16 8 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 9 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 C 0.16 6.21 5.18 86.38 0.45 6.65 16 12 C -0.11 -3.38 3.28 -9.48 -0.03 -3.41 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.11 -3.11 5.14 31.78 0.16 -2.94 16 15 C 0.10 2.27 6.49 86.73 0.56 2.83 16 16 N -0.62 -16.98 3.33 -812.24 -2.70 -19.68 16 17 C 0.53 15.34 7.84 87.66 0.69 16.03 16 18 O -0.58 -21.36 16.29 -3.04 -0.05 -21.41 16 19 C -0.09 -2.01 4.67 29.10 0.14 -1.88 16 20 C -0.16 -3.45 4.38 -19.78 -0.09 -3.54 16 21 C 0.12 2.37 7.24 22.37 0.16 2.53 16 22 F -0.14 -3.15 16.47 44.97 0.74 -2.41 16 23 C -0.16 -2.17 10.03 22.32 0.22 -1.95 16 24 C -0.05 -0.51 10.04 22.25 0.22 -0.28 16 25 C -0.16 -2.22 10.03 22.32 0.22 -2.00 16 26 C 0.12 2.38 7.24 22.37 0.16 2.55 16 27 F -0.14 -3.27 16.48 44.97 0.74 -2.53 16 28 C 0.12 3.48 6.37 86.78 0.55 4.03 16 29 H 0.00 0.13 7.34 -2.39 -0.02 0.11 16 30 H 0.02 0.83 7.33 -2.39 -0.02 0.81 16 31 H 0.03 1.12 8.03 -2.39 -0.02 1.10 16 32 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 33 H 0.04 1.66 8.07 -2.39 -0.02 1.64 16 34 H 0.05 1.90 8.00 -2.39 -0.02 1.89 16 35 H 0.07 2.16 7.39 -2.38 -0.02 2.14 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.12 2.25 7.64 -2.38 -0.02 2.23 16 40 H 0.13 2.22 7.63 -2.39 -0.02 2.21 16 41 H 0.17 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.18 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.06 2.04 8.04 -2.38 -0.02 2.02 16 45 H 0.07 2.05 8.03 -2.39 -0.02 2.03 16 Total: -1.00 -70.92 377.30 5.66 -65.25 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 1.00 Total: 8.23 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.76 Total: 13.55 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -4.56 Total: -106.70 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 1.48 Total: -4.94 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -70.92 5.66 -65.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481498521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.372 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds