Wall clock time and date at job start Tue Mar 31 2020 21:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36876 * 126.40416 * 2 1 4 4 C 1.34665 * 106.82156 * 180.19389 * 3 2 1 5 5 N 1.34127 * 108.01668 * 359.58498 * 4 3 2 6 6 C 1.30500 * 109.25894 * 0.26753 * 5 4 3 7 7 C 1.50704 * 125.64894 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46780 * 90.02287 * 7 6 5 9 9 C 1.46903 * 110.99479 * 179.97438 * 8 7 6 10 10 C 1.53007 * 109.46923 * 179.97438 * 9 8 7 11 11 C 1.53780 * 113.61425 * 274.13419 * 10 9 8 12 12 C 1.53947 * 87.01919 * 220.04935 * 11 10 9 13 13 N 1.46506 * 113.53758 * 270.81350 * 12 11 10 14 14 C 1.34779 * 119.99894 * 252.49677 * 13 12 11 15 15 O 1.21282 * 119.99754 * 359.97438 * 14 13 12 16 16 C 1.50692 * 120.00121 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47437 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00032 * 179.97438 * 17 16 14 19 19 H 1.07998 * 120.00408 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99592 * 179.97438 * 18 17 16 21 21 N 1.31631 * 120.00385 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99785 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46491 * 90.00435 * 22 20 18 24 24 H 1.48500 * 109.47149 * 210.00293 * 22 20 18 25 25 H 1.48498 * 109.47238 * 330.00772 * 22 20 18 26 26 C 1.53780 * 87.11448 * 25.36421 * 12 11 10 27 27 H 1.09008 * 109.46750 * 270.26313 * 1 2 3 28 28 H 1.08998 * 109.46750 * 30.25623 * 1 2 3 29 29 H 1.08995 * 109.47925 * 150.25869 * 1 2 3 30 30 H 1.08002 * 126.59064 * 0.08563 * 3 2 1 31 31 H 1.08002 * 125.99463 * 179.85418 * 4 3 2 32 32 H 1.08997 * 109.46911 * 210.01824 * 7 6 5 33 33 H 1.08994 * 109.46872 * 330.02168 * 7 6 5 34 34 H 1.00902 * 111.00220 * 303.94693 * 8 7 6 35 35 H 1.09005 * 109.47139 * 299.99255 * 9 8 7 36 36 H 1.08996 * 109.47347 * 60.00022 * 9 8 7 37 37 H 1.08996 * 112.84927 * 45.33431 * 10 9 8 38 38 H 1.08998 * 113.61473 * 334.57098 * 11 10 9 39 39 H 1.09003 * 113.61320 * 105.46848 * 11 10 9 40 40 H 1.09002 * 113.74334 * 139.94684 * 12 11 10 41 41 H 0.96998 * 120.00337 * 72.49702 * 13 12 11 42 42 H 1.09007 * 109.46992 * 300.00056 * 16 14 13 43 43 H 1.09007 * 109.47258 * 59.99769 * 16 14 13 44 44 H 0.96994 * 119.99956 * 179.97438 * 21 20 18 45 45 H 1.09001 * 113.61595 * 220.09454 * 26 12 11 46 46 H 1.08996 * 113.61454 * 89.18688 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1016 0.0000 4 6 3.5461 0.6503 -0.0044 5 7 3.5095 -0.6905 0.0023 6 6 2.2662 -1.0871 0.0048 7 6 1.8016 -2.5207 0.0116 8 7 1.6510 -2.9800 1.3988 9 6 1.1978 -4.3766 1.4446 10 6 1.0535 -4.8185 2.9023 11 6 2.3620 -5.3381 3.5209 12 6 1.5128 -6.4243 4.2058 13 7 0.9948 -6.0225 5.5160 14 6 1.5137 -6.5578 6.6388 15 8 2.4091 -7.3724 6.5645 16 6 0.9813 -6.1441 7.9865 17 16 1.8743 -7.0321 9.2866 18 6 1.0729 -6.3753 10.7117 19 1 0.2834 -5.6469 10.5997 20 6 1.4555 -6.7949 11.9782 21 7 2.4174 -7.6831 12.1147 22 14 0.6063 -6.0981 13.4892 23 1 -0.5641 -6.9446 13.8336 24 1 1.5582 -6.0822 14.6288 25 1 0.1498 -4.7137 13.2061 26 6 0.5008 -6.2447 3.0619 27 1 -0.3633 0.0047 1.0277 28 1 -0.3633 0.8877 -0.5178 29 1 -0.3635 -0.8922 -0.5098 30 1 1.9615 2.1344 0.0013 31 1 4.4370 1.2608 -0.0078 32 1 0.8429 -2.5943 -0.5016 33 1 2.5361 -3.1430 -0.4995 34 1 2.5103 -2.8614 1.9144 35 1 0.2346 -4.4627 0.9414 36 1 1.9277 -5.0122 0.9433 37 1 0.5416 -4.0803 3.5196 38 1 3.0655 -5.7318 2.7874 39 1 2.8231 -4.6387 4.2183 40 1 1.9853 -7.4065 4.2205 41 1 0.2784 -5.3712 5.5754 42 1 1.1198 -5.0709 8.1180 43 1 -0.0804 -6.3835 8.0469 44 1 2.6850 -7.9760 12.9998 45 1 -0.5384 -6.2761 3.3892 46 1 0.6946 -6.8867 2.2026 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485085921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:27 Heat of formation + Delta-G solvation = 46.182494 kcal Electronic energy + Delta-G solvation = -25305.884973 eV Core-core repulsion = 21551.449344 eV Total energy + Delta-G solvation = -3754.435629 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41527 -40.17192 -38.26225 -36.17187 -34.37106 -33.10741 -32.41833 -30.85265 -29.19390 -27.78722 -27.14573 -25.92621 -25.48677 -24.70560 -22.34999 -21.72713 -20.80225 -20.21194 -19.20258 -17.85979 -17.61000 -16.51081 -16.32581 -16.17843 -15.93380 -15.19569 -14.99945 -14.83914 -14.79472 -14.73876 -14.18380 -14.01293 -13.61023 -13.53174 -13.29440 -13.20675 -13.11938 -12.98631 -12.66782 -12.55134 -12.35140 -12.15684 -11.66681 -11.14146 -11.05654 -11.01630 -10.75573 -10.62268 -10.32869 -10.31757 -9.95850 -9.80118 -9.39423 -9.06104 -9.01157 -8.84691 -8.71181 -8.22564 -6.48911 -6.20728 -3.91204 1.63435 2.40185 2.75841 3.03025 3.08183 3.22951 3.28459 3.32641 3.70268 3.73542 4.13677 4.21235 4.26043 4.30406 4.37306 4.43616 4.60825 4.66305 4.74667 4.83904 4.93702 5.02612 5.08359 5.14020 5.14294 5.15198 5.26429 5.36708 5.41301 5.51155 5.55184 5.59548 5.85088 5.88905 5.89888 5.91219 5.94134 6.12086 6.15466 6.39573 6.48314 6.73474 6.78252 6.90305 7.60468 7.73266 7.75299 8.36128 8.63136 9.24534 10.86687 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.001710 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.156038 B =16374.787490 C =17328.324757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.449 5.449 3 C -0.058 4.058 4 C -0.028 4.028 5 N -0.488 5.488 6 C 0.207 3.793 7 C 0.144 3.856 8 N -0.686 5.686 9 C 0.070 3.930 10 C -0.108 4.108 11 C -0.152 4.152 12 C 0.125 3.875 13 N -0.721 5.721 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.140 4.140 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.352 0.648 35 H 0.073 0.927 36 H 0.036 0.964 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.268 0.732 45 H 0.074 0.926 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.290 14.831 -29.078 33.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.132 5.132 3 C -0.191 4.191 4 C -0.176 4.176 5 N -0.208 5.208 6 C -0.055 4.055 7 C 0.014 3.986 8 N -0.319 5.319 9 C -0.059 4.059 10 C -0.126 4.126 11 C -0.191 4.191 12 C 0.019 3.981 13 N -0.374 5.374 14 C 0.321 3.679 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.178 4.178 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.191 0.809 31 H 0.187 0.813 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.171 0.829 35 H 0.091 0.909 36 H 0.055 0.945 37 H 0.116 0.884 38 H 0.105 0.895 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.093 0.907 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.797 13.092 -29.006 32.347 hybrid contribution -1.849 2.068 0.834 2.897 sum -7.645 15.160 -28.172 32.893 Atomic orbital electron populations 1.22041 0.76461 1.04251 1.04096 1.45224 1.07700 1.06509 1.53726 1.22736 0.91402 0.92602 1.12384 1.22304 0.96513 0.91076 1.07735 1.70239 1.18529 1.12295 1.19703 1.23039 0.85714 0.90710 1.06058 1.20136 1.00585 0.86532 0.91389 1.60504 1.38477 1.21284 1.11631 1.21979 1.00053 0.87222 0.96612 1.22619 0.98001 0.96440 0.95584 1.23569 0.96455 0.99052 1.00059 1.21715 0.95177 0.99082 0.82158 1.45700 1.40432 1.46519 1.04762 1.20326 0.82000 0.80403 0.85218 1.90699 1.29012 1.32406 1.86901 1.23534 1.04940 1.05403 0.96539 1.85403 1.48189 1.55252 0.94477 1.22869 1.23785 1.29603 0.92120 0.90932 1.24996 0.95097 0.94885 0.98635 1.70017 1.27182 1.29122 1.23945 0.86168 0.79057 0.79254 0.81015 1.20283 1.20749 1.19703 1.23330 0.99540 0.96374 0.98595 0.90005 0.89831 0.89531 0.80855 0.81279 0.89697 0.91898 0.82915 0.90853 0.94531 0.88406 0.89516 0.90830 0.88049 0.76800 0.89213 0.89218 0.92185 0.90719 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 10.97 59.85 0.66 0.93 16 2 N -0.45 -3.32 3.15 -121.28 -0.38 -3.70 16 3 C -0.06 -0.43 11.58 -16.57 -0.19 -0.62 16 4 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 5 N -0.49 -5.57 11.25 -10.81 -0.12 -5.70 16 6 C 0.21 1.91 7.42 -155.41 -1.15 0.76 16 7 C 0.14 1.00 5.99 -4.97 -0.03 0.97 16 8 N -0.69 -5.07 6.49 -115.05 -0.75 -5.81 16 9 C 0.07 0.45 5.51 -3.82 -0.02 0.42 16 10 C -0.11 -0.81 3.77 -89.80 -0.34 -1.14 16 11 C -0.15 -1.49 7.44 -25.83 -0.19 -1.68 16 12 C 0.13 1.42 4.33 -67.03 -0.29 1.13 16 13 N -0.72 -9.53 5.26 -52.93 -0.28 -9.80 16 14 C 0.53 9.98 7.85 -10.99 -0.09 9.90 16 15 O -0.52 -11.80 15.46 5.56 0.09 -11.71 16 16 C -0.15 -3.10 6.16 36.00 0.22 -2.88 16 17 S -0.06 -1.63 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.33 9.50 30.94 0.29 -15.03 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 22 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 C -0.14 -1.08 7.39 -25.92 -0.19 -1.27 16 27 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.09 0.22 7.04 -51.93 -0.37 -0.14 16 30 H 0.17 0.72 8.06 -52.49 -0.42 0.29 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.08 0.43 7.07 -51.93 -0.37 0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.35 3.11 8.72 -39.29 -0.34 2.77 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.04 0.23 7.87 -51.93 -0.41 -0.18 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.10 1.37 7.46 -51.93 -0.39 0.99 16 41 H 0.40 4.15 8.70 -40.82 -0.36 3.80 16 42 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 43 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -36.90 399.95 -10.80 -47.70 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -7.25 Total: 2.91 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -1.63 Total: -6.98 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.80 Total: -50.56 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.90 -10.80 -47.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485085921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.882 kcal (2) G-P(sol) polarization free energy of solvation -36.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds