Wall clock time and date at job start Tue Mar 31 2020 20:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47351 * 2 1 4 4 C 1.46901 * 110.99635 * 63.60515 * 3 2 1 5 5 C 1.53001 * 109.46945 * 66.05040 * 4 3 2 6 6 N 1.46507 * 109.47019 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99811 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00295 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99686 * 179.97438 * 7 6 5 10 10 S 1.81004 * 109.47034 * 179.97438 * 9 7 6 11 11 C 1.76202 * 100.00105 * 180.02562 * 10 9 7 12 12 H 1.07999 * 119.99901 * 359.97438 * 11 10 9 13 13 C 1.38794 * 120.00196 * 179.97438 * 11 10 9 14 14 N 1.31629 * 119.99805 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00237 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46859 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47090 * 119.99965 * 15 13 11 18 18 H 1.48498 * 109.46959 * 240.00010 * 15 13 11 19 19 C 1.46895 * 110.99903 * 299.65454 * 3 2 1 20 20 H 1.09001 * 109.47537 * 68.17308 * 19 3 2 21 21 C 1.53001 * 109.46946 * 188.17052 * 19 3 2 22 22 C 1.50700 * 109.47179 * 308.17057 * 19 3 2 23 23 N 1.31794 * 119.12040 * 312.62704 * 22 19 3 24 24 C 1.32342 * 120.81570 * 179.75856 * 23 22 19 25 25 C 1.38600 * 119.10363 * 0.50996 * 24 23 22 26 26 C 1.38602 * 118.39839 * 359.75025 * 25 24 23 27 27 N 1.31795 * 119.12288 * 132.90178 * 22 19 3 28 28 H 1.09000 * 109.47601 * 177.85670 * 1 2 3 29 29 H 1.09001 * 109.46645 * 297.85459 * 1 2 3 30 30 H 1.09003 * 109.46981 * 57.85027 * 1 2 3 31 31 H 1.09006 * 109.46427 * 240.00237 * 2 1 3 32 32 H 1.08999 * 109.46959 * 120.00787 * 2 1 3 33 33 H 1.08997 * 109.47683 * 306.04707 * 4 3 2 34 34 H 1.09008 * 109.47080 * 186.04369 * 4 3 2 35 35 H 1.09004 * 109.46724 * 299.99074 * 5 4 3 36 36 H 1.08993 * 109.47781 * 59.99812 * 5 4 3 37 37 H 0.96997 * 119.99519 * 359.97438 * 6 5 4 38 38 H 1.09000 * 109.47347 * 299.99828 * 9 7 6 39 39 H 1.09005 * 109.47308 * 60.00049 * 9 7 6 40 40 H 0.97001 * 119.99999 * 179.97438 * 14 13 11 41 41 H 1.09005 * 109.47404 * 60.00185 * 21 19 3 42 42 H 1.09007 * 109.47561 * 179.97438 * 21 19 3 43 43 H 1.09000 * 109.47596 * 300.00080 * 21 19 3 44 44 H 1.07990 * 120.44842 * 180.27804 * 24 23 22 45 45 H 1.07994 * 120.80348 * 179.76885 * 25 24 23 46 46 H 1.08000 * 120.44556 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6204 2.0845 1.2285 5 6 2.3249 1.4493 2.4290 6 7 1.9271 2.1473 3.6541 7 6 2.4259 1.7575 4.8439 8 8 3.2036 0.8286 4.9005 9 6 2.0171 2.4758 6.1041 10 16 2.8493 1.7234 7.5245 11 6 2.2081 2.7281 8.8223 12 1 1.5153 3.5251 8.5961 13 6 2.5934 2.4952 10.1352 14 7 3.4375 1.5235 10.4108 15 14 1.9143 3.5608 11.5109 16 1 0.9911 4.5751 10.9416 17 1 1.1772 2.7091 12.4788 18 1 3.0342 4.2447 12.2061 19 6 1.5555 2.1074 -1.1918 20 1 0.4763 2.2488 -1.1336 21 6 2.2454 3.4713 -1.2623 22 6 1.8919 1.3100 -2.4254 23 7 3.1055 0.8131 -2.5568 24 6 3.4357 0.1037 -3.6241 25 6 2.4890 -0.1043 -4.6148 26 6 1.2253 0.4386 -4.4433 27 7 0.9663 1.1326 -3.3467 28 1 -0.3634 -1.0269 -0.0384 29 1 -0.3633 0.4802 0.9086 30 1 -0.3633 0.5469 -0.8701 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5140 0.8899 33 1 0.5409 2.0055 1.3571 34 1 1.9018 3.1351 1.1562 35 1 2.0434 0.3987 2.5013 36 1 3.4044 1.5283 2.3005 37 1 1.3048 2.8900 3.6088 38 1 2.2996 3.5261 6.0315 39 1 0.9375 2.3980 6.2328 40 1 3.7071 1.3609 11.3283 41 1 3.3247 3.3300 -1.3205 42 1 1.9013 4.0073 -2.1469 43 1 2.0022 4.0481 -0.3700 44 1 4.4306 -0.3045 -3.7236 45 1 2.7300 -0.6757 -5.4989 46 1 0.4624 0.2973 -5.1946 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001492916921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:01 Heat of formation + Delta-G solvation = 25.207357 kcal Electronic energy + Delta-G solvation = -26104.702633 eV Core-core repulsion = 22349.357454 eV Total energy + Delta-G solvation = -3755.345179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.61769 -39.40568 -38.55408 -34.76527 -34.11073 -33.34855 -32.40737 -31.57728 -30.54741 -28.98055 -27.27691 -25.49117 -25.19118 -24.86804 -23.84803 -22.25339 -20.49002 -19.90543 -18.01240 -17.76832 -17.42112 -16.65727 -16.31848 -16.12291 -15.75674 -15.49996 -15.18707 -14.80333 -14.77607 -14.42893 -14.30818 -13.90611 -13.74548 -13.44599 -13.26419 -13.05349 -12.66453 -12.62687 -12.46506 -12.16520 -12.03320 -11.82388 -11.55086 -11.44216 -11.22321 -11.05778 -11.05246 -10.99571 -10.81197 -10.73716 -9.96939 -9.78315 -9.59953 -9.36823 -9.05664 -8.81242 -8.60343 -8.19956 -6.47146 -6.19604 -3.89783 0.42884 0.67528 2.90368 3.15794 3.20995 3.23112 3.31061 3.34794 3.39062 3.53065 3.78972 4.02248 4.15865 4.22434 4.50047 4.58866 4.64030 4.68029 4.72768 4.83711 4.94486 4.99316 5.05975 5.13542 5.15598 5.17073 5.22881 5.30624 5.33661 5.50714 5.63515 5.63821 5.67792 5.82477 5.85440 5.91748 5.94639 5.95639 6.06332 6.17197 6.53666 6.62140 6.66961 6.78138 7.62026 7.71165 7.75400 8.37617 8.66985 9.25821 10.87886 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035013 B = 0.001721 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.513491 B =16268.155072 C =16427.854201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.046 3.954 3 N -0.511 5.511 4 C 0.038 3.962 5 C 0.126 3.874 6 N -0.739 5.739 7 C 0.532 3.468 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.280 1.280 19 C 0.150 3.850 20 H 0.072 0.928 21 C -0.143 4.143 22 C 0.328 3.672 23 N -0.486 5.486 24 C 0.146 3.854 25 C -0.233 4.233 26 C 0.146 3.854 27 N -0.519 5.519 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.087 0.913 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.397 0.603 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.268 0.732 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.071 0.929 44 H 0.169 0.831 45 H 0.147 0.853 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.141 0.223 -33.037 33.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.082 4.082 3 N -0.236 5.236 4 C -0.090 4.090 5 C 0.002 3.998 6 N -0.394 5.394 7 C 0.318 3.682 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.206 1.206 19 C 0.040 3.960 20 H 0.089 0.911 21 C -0.201 4.201 22 C 0.061 3.939 23 N -0.199 5.199 24 C -0.020 4.020 25 C -0.256 4.256 26 C -0.020 4.020 27 N -0.233 5.233 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.186 0.814 45 H 0.165 0.835 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.428 -0.919 -32.018 32.336 hybrid contribution -2.322 1.435 -0.189 2.736 sum -6.750 0.516 -32.207 32.911 Atomic orbital electron populations 1.22465 0.97965 1.02742 1.02348 1.22245 0.92953 0.89777 1.03185 1.62065 1.59336 1.01919 1.00260 1.22373 0.98316 0.99195 0.89088 1.21158 1.00326 0.96234 0.82085 1.45912 1.49828 1.37351 1.06334 1.20268 0.80200 0.83692 0.84011 1.90709 1.33573 1.28390 1.86341 1.23528 1.05197 1.03598 0.98033 1.85415 1.59337 1.44773 0.93888 1.22914 1.32237 1.19882 0.93264 0.90879 1.24994 0.94883 0.95623 0.98128 1.70031 1.31084 1.29057 1.20108 0.86117 0.78731 0.79775 0.80866 1.19632 1.20597 1.20570 1.20274 0.98539 0.92392 0.84817 0.91060 1.21875 1.02326 0.93630 1.02241 1.22891 0.85002 0.92017 0.94035 1.68360 1.19763 1.08948 1.22850 1.23387 0.99867 0.90926 0.87854 1.22957 0.96264 1.03859 1.02470 1.23207 0.95530 0.89560 0.93708 1.68206 1.36020 1.16190 1.02858 0.92034 0.91928 0.92145 0.91372 0.89553 0.93513 0.89484 0.91681 0.90569 0.77003 0.89200 0.89280 0.92256 0.90627 0.92168 0.91045 0.81395 0.83533 0.81547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.71 9.24 37.16 0.34 -1.37 16 2 C 0.05 0.45 5.46 -3.82 -0.02 0.43 16 3 N -0.51 -4.90 4.42 -228.03 -1.01 -5.91 16 4 C 0.04 0.34 4.74 -3.82 -0.02 0.33 16 5 C 0.13 1.55 5.60 -4.04 -0.02 1.52 16 6 N -0.74 -9.92 5.56 -60.29 -0.33 -10.25 16 7 C 0.53 10.08 7.85 -10.99 -0.09 10.00 16 8 O -0.52 -12.00 15.86 5.56 0.09 -11.91 16 9 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 12 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 13 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 14 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 15 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 16 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.15 1.33 1.86 -68.87 -0.13 1.20 16 20 H 0.07 0.62 6.69 -51.93 -0.35 0.27 16 21 C -0.14 -1.12 9.08 37.16 0.34 -0.78 16 22 C 0.33 3.11 4.85 -157.20 -0.76 2.35 16 23 N -0.49 -4.68 9.51 -10.73 -0.10 -4.78 16 24 C 0.15 0.98 11.31 -17.20 -0.19 0.78 16 25 C -0.23 -1.16 10.17 -39.31 -0.40 -1.56 16 26 C 0.15 0.89 11.31 -17.20 -0.19 0.70 16 27 N -0.52 -4.61 10.32 -10.72 -0.11 -4.72 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.55 6.47 -51.93 -0.34 0.21 16 30 H 0.06 0.54 6.41 -51.93 -0.33 0.21 16 31 H 0.07 0.72 6.41 -51.93 -0.33 0.39 16 32 H 0.09 0.91 6.31 -51.93 -0.33 0.58 16 33 H 0.05 0.39 6.16 -51.93 -0.32 0.07 16 34 H 0.09 0.69 6.00 -51.92 -0.31 0.38 16 35 H 0.06 0.87 6.48 -51.93 -0.34 0.53 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.40 4.03 8.47 -40.82 -0.35 3.68 16 38 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 39 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 40 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.48 6.31 -51.93 -0.33 0.15 16 44 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.17 0.50 8.06 -52.49 -0.42 0.07 16 LS Contribution 387.80 15.07 5.84 5.84 Total: -1.00 -36.49 387.80 -9.52 -46.01 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.67 Total: 1.03 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.73 Total: -2.33 kcal Atomic # 7 Polarization: -50.44 SS G_CDS: -0.82 Total: -51.26 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.49 -9.52 -46.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001492916921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.217 kcal (2) G-P(sol) polarization free energy of solvation -36.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds