Wall clock time and date at job start Tue Mar 31 2020 21:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34955 * 126.03226 * 2 1 4 4 C 1.35318 * 107.74268 * 180.15113 * 3 2 1 5 5 C 1.50698 * 126.03925 * 179.87485 * 4 3 2 6 6 N 1.46898 * 109.47313 * 269.71260 * 5 4 3 7 7 C 1.46901 * 111.00213 * 177.32697 * 6 5 4 8 8 H 1.09000 * 109.47127 * 347.65943 * 7 6 5 9 9 C 1.53003 * 109.47453 * 227.65608 * 7 6 5 10 10 N 1.46501 * 109.46517 * 55.00097 * 9 7 6 11 11 C 1.34781 * 119.99698 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99562 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00180 * 180.02562 * 11 10 9 14 14 S 1.80996 * 109.47366 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00196 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00217 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99805 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99657 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47362 * 90.00231 * 19 17 15 21 21 H 1.48501 * 109.47459 * 210.00312 * 19 17 15 22 22 H 1.48504 * 109.47579 * 330.00152 * 19 17 15 23 23 C 1.52996 * 109.46841 * 107.65843 * 7 6 5 24 24 C 1.53002 * 117.51863 * 346.03411 * 23 7 6 25 25 C 1.53005 * 117.50123 * 54.66535 * 23 7 6 26 26 C 1.39869 * 107.92290 * 359.61143 * 4 3 2 27 27 N 1.30836 * 108.20013 * 0.24245 * 26 4 3 28 28 H 1.09000 * 109.46993 * 270.25515 * 1 2 3 29 29 H 1.08994 * 109.47532 * 30.25739 * 1 2 3 30 30 H 1.09006 * 109.47003 * 150.26357 * 1 2 3 31 31 H 1.08002 * 126.13176 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47154 * 149.71176 * 5 4 3 33 33 H 1.08999 * 109.47234 * 29.71287 * 5 4 3 34 34 H 1.00899 * 110.99613 * 53.37782 * 6 5 4 35 35 H 1.08991 * 109.47163 * 174.99889 * 9 7 6 36 36 H 1.08997 * 109.46832 * 295.00529 * 9 7 6 37 37 H 0.96998 * 120.00532 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47348 * 299.99991 * 13 11 10 39 39 H 1.09004 * 109.47363 * 59.99434 * 13 11 10 40 40 H 0.96993 * 120.00634 * 179.97438 * 18 17 15 41 41 H 1.09004 * 115.55010 * 200.33410 * 23 7 6 42 42 H 1.09006 * 117.49983 * 214.96959 * 24 23 7 43 43 H 1.08993 * 117.49728 * 359.97438 * 24 23 7 44 44 H 1.08996 * 117.49795 * 359.97127 * 25 23 7 45 45 H 1.08994 * 117.50099 * 144.99891 * 25 23 7 46 46 H 1.07997 * 125.90141 * 180.26139 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0914 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 4.7679 1.5455 -0.0073 6 7 5.1659 1.8247 -1.3935 7 6 6.3204 2.7320 -1.4373 8 1 6.4817 3.1626 -0.4490 9 6 6.0509 3.8522 -2.4440 10 7 4.7937 4.5226 -2.1034 11 6 4.3512 5.5483 -2.8575 12 8 4.9941 5.9165 -3.8178 13 6 3.0582 6.2385 -2.5069 14 16 2.7393 7.5636 -3.6979 15 6 1.2140 8.1808 -3.0678 16 1 0.7712 7.7326 -2.1905 17 6 0.5819 9.2436 -3.6983 18 7 1.1217 9.7901 -4.7671 19 14 -1.0348 9.8984 -3.0298 20 1 -0.7629 10.9709 -2.0394 21 1 -1.8452 10.4490 -4.1457 22 1 -1.7818 8.7958 -2.3729 23 6 7.5658 1.9522 -1.8633 24 6 7.4876 0.4244 -1.8344 25 6 7.4928 1.1650 -3.1733 26 6 3.5347 -0.7319 0.0035 27 7 2.2892 -1.1326 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8924 -0.5098 31 1 1.9280 2.1195 0.0004 32 1 5.5820 1.0367 0.5090 33 1 4.5440 2.4827 0.5022 34 1 4.3926 2.1978 -1.9235 35 1 6.8675 4.5734 -2.4122 36 1 5.9777 3.4301 -3.4462 37 1 4.2793 4.2280 -1.3356 38 1 2.2414 5.5174 -2.5379 39 1 3.1319 6.6610 -1.5048 40 1 0.6799 10.5326 -5.2079 41 1 8.5197 2.4122 -1.6052 42 1 8.3900 -0.1206 -1.5573 43 1 6.5488 -0.0254 -1.5115 44 1 6.5573 1.2023 -3.7313 45 1 8.3985 1.1072 -3.7769 46 1 4.4055 -1.3708 0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713103708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:00 Heat of formation + Delta-G solvation = 73.478348 kcal Electronic energy + Delta-G solvation = -26326.008294 eV Core-core repulsion = 22572.756302 eV Total energy + Delta-G solvation = -3753.251992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.44799 -39.65566 -38.33702 -35.44502 -34.29874 -33.16244 -32.46996 -31.13440 -29.78521 -28.31356 -27.02378 -25.53292 -24.31107 -23.67782 -22.22247 -21.35728 -20.52350 -20.47203 -19.68969 -17.96931 -17.23508 -16.67834 -16.23793 -16.08417 -15.75446 -15.35014 -14.91431 -14.84707 -14.76504 -14.49231 -14.19315 -13.95911 -13.73461 -13.23682 -13.20119 -12.97617 -12.93526 -12.71055 -12.61596 -12.05237 -11.97503 -11.71072 -11.51998 -11.36874 -11.10291 -11.06755 -10.84179 -10.80170 -10.37134 -10.03963 -9.85169 -9.68064 -9.44673 -9.11196 -8.96137 -8.83626 -8.56260 -8.27694 -6.54141 -6.25512 -3.96353 1.61723 2.26056 2.49952 2.96452 3.04746 3.18647 3.24086 3.27327 3.60317 3.80602 4.01566 4.16276 4.26071 4.54935 4.65241 4.71123 4.81172 4.82822 4.87779 4.89580 5.04963 5.09103 5.09607 5.09880 5.20768 5.24225 5.39755 5.46332 5.54739 5.57445 5.66255 5.69086 5.81259 5.82567 5.84316 5.93987 6.06271 6.13583 6.28972 6.37645 6.52431 6.69851 6.79481 7.13238 7.44174 7.54867 7.59622 8.30727 8.55216 9.19624 10.81911 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.002855 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.070796 B = 9806.100385 C =12469.012178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.375 5.375 3 C 0.062 3.938 4 C -0.238 4.238 5 C 0.138 3.862 6 N -0.681 5.681 7 C 0.107 3.893 8 H 0.068 0.932 9 C 0.111 3.889 10 N -0.743 5.743 11 C 0.532 3.468 12 O -0.513 6.513 13 C -0.153 4.153 14 S -0.058 6.058 15 C -0.537 4.537 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.151 4.151 24 C -0.160 4.160 25 C -0.170 4.170 26 C 0.067 3.933 27 N -0.302 5.302 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.172 0.828 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.346 0.654 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.392 0.608 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.269 0.731 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.085 0.915 46 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.388 -21.048 12.584 25.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.156 5.156 3 C -0.085 4.085 4 C -0.250 4.250 5 C 0.009 3.991 6 N -0.315 5.315 7 C -0.003 4.003 8 H 0.086 0.914 9 C -0.013 4.013 10 N -0.398 5.398 11 C 0.318 3.682 12 O -0.386 6.386 13 C -0.304 4.304 14 S 0.168 5.832 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.170 4.170 24 C -0.197 4.197 25 C -0.207 4.207 26 C -0.120 4.120 27 N -0.123 5.123 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.189 0.811 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.167 0.833 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.226 0.774 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.098 0.902 43 H 0.129 0.871 44 H 0.114 0.886 45 H 0.103 0.897 46 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.863 -21.858 10.762 25.311 hybrid contribution -1.946 1.480 2.127 3.240 sum 4.917 -20.378 12.889 24.608 Atomic orbital electron populations 1.21892 0.74084 1.04780 1.03387 1.48464 1.06716 1.03826 1.56634 1.22429 0.91027 0.93544 1.01518 1.19923 0.93772 0.94187 1.17087 1.20243 0.93548 0.96134 0.89189 1.60512 1.09504 1.48671 1.12773 1.21237 0.90790 0.90210 0.98082 0.91435 1.21629 0.86703 0.93856 0.99115 1.46060 1.25019 1.36099 1.32664 1.20289 0.86678 0.78993 0.82236 1.90717 1.57480 1.63203 1.27227 1.23526 0.96467 1.03954 1.06448 1.85440 1.29147 1.33749 1.34824 1.22854 1.08131 1.20859 1.16652 0.90995 1.24990 0.98266 0.95596 0.94703 1.70006 1.38779 1.23097 1.18300 0.86174 0.81775 0.79026 0.78545 1.20256 1.20723 1.19742 1.22203 0.97491 0.94193 1.03137 1.22871 1.03092 0.92993 1.00740 1.22797 1.02773 1.04518 0.90562 1.23739 0.94992 0.94470 0.98756 1.77377 1.01793 1.08321 1.24826 0.90755 0.89190 0.89258 0.81053 0.90017 0.94662 0.83323 0.90885 0.90638 0.77447 0.89389 0.89341 0.92131 0.87997 0.90171 0.87086 0.88598 0.89664 0.80156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 11.47 59.85 0.69 1.27 16 2 N -0.37 -3.47 4.01 -68.16 -0.27 -3.74 16 3 C 0.06 0.52 11.40 -17.22 -0.20 0.32 16 4 C -0.24 -1.99 5.58 -105.05 -0.59 -2.58 16 5 C 0.14 0.97 5.75 -4.98 -0.03 0.94 16 6 N -0.68 -5.37 4.48 -107.99 -0.48 -5.85 16 7 C 0.11 0.88 2.74 -67.71 -0.19 0.69 16 8 H 0.07 0.52 7.54 -51.93 -0.39 0.13 16 9 C 0.11 1.24 5.08 -4.04 -0.02 1.22 16 10 N -0.74 -9.15 4.91 -60.30 -0.30 -9.45 16 11 C 0.53 9.52 7.85 -10.99 -0.09 9.44 16 12 O -0.51 -11.42 15.86 5.55 0.09 -11.34 16 13 C -0.15 -2.96 6.16 36.00 0.22 -2.74 16 14 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 15 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 16 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 17 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 18 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 19 Si 0.92 21.01 29.55 -169.99 -5.02 15.98 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 C -0.15 -1.23 5.79 -90.62 -0.52 -1.75 16 24 C -0.16 -1.27 9.86 -26.73 -0.26 -1.53 16 25 C -0.17 -1.50 9.58 -26.73 -0.26 -1.75 16 26 C 0.07 0.63 11.96 -17.37 -0.21 0.42 16 27 N -0.30 -3.35 12.58 30.62 0.39 -2.96 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 34 H 0.35 3.13 7.05 -39.29 -0.28 2.85 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.08 0.96 7.51 -51.93 -0.39 0.57 16 37 H 0.39 3.73 7.83 -40.82 -0.32 3.41 16 38 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 39 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 0.94 6.91 -51.93 -0.36 0.58 16 44 H 0.10 0.96 7.93 -51.93 -0.41 0.55 16 45 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -35.32 401.22 -9.47 -44.79 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.19 Total: 4.15 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.25 Total: -8.77 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 0.07 Total: -47.11 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.32 -9.47 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713103708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.266 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds