Wall clock time and date at job start Tue Mar 31 2020 21:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34955 * 126.03226 * 2 1 4 4 C 1.35318 * 107.74268 * 180.15113 * 3 2 1 5 5 C 1.50698 * 126.03925 * 179.87485 * 4 3 2 6 6 N 1.46898 * 109.47313 * 269.71260 * 5 4 3 7 7 C 1.46901 * 111.00213 * 177.32697 * 6 5 4 8 8 H 1.09000 * 109.47127 * 347.65943 * 7 6 5 9 9 C 1.53003 * 109.47453 * 227.65608 * 7 6 5 10 10 N 1.46501 * 109.46517 * 55.00097 * 9 7 6 11 11 C 1.34781 * 119.99698 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99562 * 359.97438 * 11 10 9 13 13 C 1.50696 * 120.00180 * 180.02562 * 11 10 9 14 14 S 1.80996 * 109.47366 * 179.97438 * 13 11 10 15 15 C 1.76196 * 100.00196 * 179.97438 * 14 13 11 16 16 H 1.08003 * 120.00217 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99805 * 179.97438 * 15 14 13 18 18 N 1.31620 * 120.00375 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99657 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47362 * 90.00231 * 19 17 15 21 21 H 1.48501 * 109.47459 * 210.00312 * 19 17 15 22 22 H 1.48504 * 109.47579 * 330.00152 * 19 17 15 23 23 C 1.52996 * 109.46841 * 107.65843 * 7 6 5 24 24 C 1.53002 * 117.51863 * 346.03411 * 23 7 6 25 25 C 1.53005 * 117.50123 * 54.66535 * 23 7 6 26 26 C 1.39869 * 107.92290 * 359.61143 * 4 3 2 27 27 N 1.30836 * 108.20013 * 0.24245 * 26 4 3 28 28 H 1.09000 * 109.46993 * 270.25515 * 1 2 3 29 29 H 1.08994 * 109.47532 * 30.25739 * 1 2 3 30 30 H 1.09006 * 109.47003 * 150.26357 * 1 2 3 31 31 H 1.08002 * 126.13176 * 0.02562 * 3 2 1 32 32 H 1.09004 * 109.47154 * 149.71176 * 5 4 3 33 33 H 1.08999 * 109.47234 * 29.71287 * 5 4 3 34 34 H 1.00899 * 110.99613 * 53.37782 * 6 5 4 35 35 H 1.08991 * 109.47163 * 174.99889 * 9 7 6 36 36 H 1.08997 * 109.46832 * 295.00529 * 9 7 6 37 37 H 0.96998 * 120.00532 * 359.97438 * 10 9 7 38 38 H 1.08999 * 109.47348 * 299.99991 * 13 11 10 39 39 H 1.09004 * 109.47363 * 59.99434 * 13 11 10 40 40 H 0.96993 * 120.00634 * 179.97438 * 18 17 15 41 41 H 1.09004 * 115.55010 * 200.33410 * 23 7 6 42 42 H 1.09006 * 117.49983 * 214.96959 * 24 23 7 43 43 H 1.08993 * 117.49728 * 359.97438 * 24 23 7 44 44 H 1.08996 * 117.49795 * 359.97127 * 25 23 7 45 45 H 1.08994 * 117.50099 * 144.99891 * 25 23 7 46 46 H 1.07997 * 125.90141 * 180.26139 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2588 1.0914 0.0000 4 6 3.5437 0.6667 -0.0034 5 6 4.7679 1.5455 -0.0073 6 7 5.1659 1.8247 -1.3935 7 6 6.3204 2.7320 -1.4373 8 1 6.4817 3.1626 -0.4490 9 6 6.0509 3.8522 -2.4440 10 7 4.7937 4.5226 -2.1034 11 6 4.3512 5.5483 -2.8575 12 8 4.9941 5.9165 -3.8178 13 6 3.0582 6.2385 -2.5069 14 16 2.7393 7.5636 -3.6979 15 6 1.2140 8.1808 -3.0678 16 1 0.7712 7.7326 -2.1905 17 6 0.5819 9.2436 -3.6983 18 7 1.1217 9.7901 -4.7671 19 14 -1.0348 9.8984 -3.0298 20 1 -0.7629 10.9709 -2.0394 21 1 -1.8452 10.4490 -4.1457 22 1 -1.7818 8.7958 -2.3729 23 6 7.5658 1.9522 -1.8633 24 6 7.4876 0.4244 -1.8344 25 6 7.4928 1.1650 -3.1733 26 6 3.5347 -0.7319 0.0035 27 7 2.2892 -1.1326 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3634 0.8876 -0.5178 30 1 -0.3633 -0.8924 -0.5098 31 1 1.9280 2.1195 0.0004 32 1 5.5820 1.0367 0.5090 33 1 4.5440 2.4827 0.5022 34 1 4.3926 2.1978 -1.9235 35 1 6.8675 4.5734 -2.4122 36 1 5.9777 3.4301 -3.4462 37 1 4.2793 4.2280 -1.3356 38 1 2.2414 5.5174 -2.5379 39 1 3.1319 6.6610 -1.5048 40 1 0.6799 10.5326 -5.2079 41 1 8.5197 2.4122 -1.6052 42 1 8.3900 -0.1206 -1.5573 43 1 6.5488 -0.0254 -1.5115 44 1 6.5573 1.2023 -3.7313 45 1 8.3985 1.1072 -3.7769 46 1 4.4055 -1.3708 0.0069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713103708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:59 Heat of formation + Delta-G solvation = 49.274936 kcal Electronic energy + Delta-G solvation = -26327.057833 eV Core-core repulsion = 22572.756302 eV Total energy + Delta-G solvation = -3754.301531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.07112 -40.82934 -39.30314 -36.22871 -35.25417 -34.57673 -33.83670 -32.07828 -30.88050 -29.23481 -27.76014 -27.55233 -24.96008 -24.51484 -22.91254 -21.99462 -21.78183 -21.10948 -20.47362 -19.80364 -18.07332 -17.77787 -17.22164 -17.13355 -16.87217 -16.52402 -16.33723 -15.92761 -15.76444 -15.40489 -15.15382 -14.88947 -14.61650 -14.50973 -14.33512 -14.02571 -13.67585 -13.48882 -13.41245 -13.16133 -13.15698 -12.88689 -12.70958 -12.61627 -12.52355 -12.23345 -12.01519 -11.72820 -11.48768 -11.13720 -11.09713 -10.93006 -10.67079 -10.33791 -10.25571 -10.15631 -9.45960 -9.17439 -8.65733 -8.33875 -6.11755 0.99977 1.27323 1.42901 1.47897 1.57302 1.61403 1.73017 1.85845 2.22893 2.28768 3.00555 3.07644 3.31713 3.36256 3.72006 3.87290 3.98483 4.02529 4.06217 4.17070 4.30029 4.31962 4.36638 4.42397 4.43220 4.49935 4.50917 4.56691 4.64651 4.69584 4.86705 4.93254 4.96824 4.98003 5.04621 5.20057 5.24794 5.40362 5.42613 5.45855 5.64455 5.76286 6.13368 6.19481 6.20444 6.43888 6.44946 6.80033 7.07574 7.22517 8.75293 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009303 B = 0.002855 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3009.070796 B = 9806.100385 C =12469.012178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.058 3.942 4 C -0.244 4.244 5 C 0.144 3.856 6 N -0.682 5.682 7 C 0.120 3.880 8 H 0.084 0.916 9 C 0.114 3.886 10 N -0.713 5.713 11 C 0.534 3.466 12 O -0.564 6.564 13 C -0.128 4.128 14 S -0.154 6.154 15 C -0.544 4.544 16 H 0.085 0.915 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.998 3.002 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.256 1.256 23 C -0.150 4.150 24 C -0.148 4.148 25 C -0.182 4.182 26 C 0.058 3.942 27 N -0.343 5.343 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.087 0.913 31 H 0.196 0.804 32 H 0.088 0.912 33 H 0.049 0.951 34 H 0.341 0.659 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.411 0.589 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.271 0.729 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.108 0.892 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.684 -21.746 15.132 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.165 5.165 3 C -0.090 4.090 4 C -0.256 4.256 5 C 0.015 3.985 6 N -0.315 5.315 7 C 0.010 3.990 8 H 0.102 0.898 9 C -0.010 4.010 10 N -0.368 5.368 11 C 0.320 3.680 12 O -0.442 6.442 13 C -0.279 4.279 14 S 0.074 5.926 15 C -0.692 4.692 16 H 0.103 0.897 17 C -0.192 4.192 18 N -0.549 5.549 19 Si 0.819 3.181 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.179 1.179 23 C -0.169 4.169 24 C -0.185 4.185 25 C -0.220 4.220 26 C -0.128 4.128 27 N -0.165 5.165 28 H 0.104 0.896 29 H 0.125 0.875 30 H 0.105 0.895 31 H 0.213 0.787 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.248 0.752 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.080 0.920 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 6.159 -22.613 13.367 26.981 hybrid contribution -1.663 1.575 1.366 2.667 sum 4.497 -21.038 14.733 26.074 Atomic orbital electron populations 1.22121 0.72687 1.05547 1.04409 1.48754 1.07716 1.03652 1.56412 1.22906 0.91079 0.94374 1.00658 1.20089 0.94395 0.93899 1.17178 1.20249 0.93230 0.96509 0.88522 1.60513 1.09137 1.48393 1.13494 1.21128 0.91005 0.89155 0.97680 0.89778 1.21691 0.85493 0.94370 0.99443 1.45723 1.25184 1.33941 1.31912 1.20077 0.85998 0.79815 0.82088 1.90710 1.58735 1.65088 1.29636 1.23357 0.98103 1.01748 1.04712 1.85658 1.30046 1.37839 1.39100 1.23202 1.08056 1.21065 1.16893 0.89720 1.26125 1.02420 0.95825 0.94831 1.70178 1.40803 1.23851 1.20030 0.84965 0.76549 0.78674 0.77866 1.19396 1.20546 1.17948 1.22277 0.97788 0.94484 1.02396 1.22862 1.03434 0.92722 0.99470 1.22765 1.02150 1.05969 0.91067 1.24092 0.95030 0.95414 0.98245 1.77314 1.02795 1.09888 1.26464 0.89610 0.87473 0.89472 0.78712 0.89375 0.93331 0.83968 0.91636 0.92262 0.75228 0.87025 0.87129 0.92050 0.87098 0.89071 0.87401 0.90191 0.89420 0.78844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.95 11.47 127.77 1.47 2.41 16 2 N -0.38 -6.56 4.01 -369.56 -1.48 -8.04 16 3 C 0.06 0.82 11.40 83.54 0.95 1.78 16 4 C -0.24 -3.57 5.58 -20.14 -0.11 -3.68 16 5 C 0.14 1.58 5.75 85.56 0.49 2.08 16 6 N -0.68 -9.10 4.48 -495.58 -2.22 -11.32 16 7 C 0.12 1.68 2.74 44.91 0.12 1.80 16 8 H 0.08 0.97 7.54 -2.39 -0.02 0.95 16 9 C 0.11 2.38 5.08 86.38 0.44 2.82 16 10 N -0.71 -16.02 4.91 -463.07 -2.27 -18.29 16 11 C 0.53 18.59 7.85 87.65 0.69 19.28 16 12 O -0.56 -25.51 15.86 -3.04 -0.05 -25.56 16 13 C -0.13 -4.74 6.16 71.23 0.44 -4.30 16 14 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 15 C -0.54 -30.18 9.50 67.96 0.65 -29.54 16 16 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 17 C 0.01 0.71 5.49 84.86 0.47 1.17 16 18 N -0.91 -55.38 13.22 21.65 0.29 -55.10 16 19 Si 1.00 42.48 29.55 68.60 2.03 44.50 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 23 C -0.15 -2.14 5.79 -10.79 -0.06 -2.20 16 24 C -0.15 -2.04 9.86 30.60 0.30 -1.74 16 25 C -0.18 -3.05 9.58 30.60 0.29 -2.76 16 26 C 0.06 1.01 11.96 85.24 1.02 2.03 16 27 N -0.34 -7.36 12.58 -57.03 -0.72 -8.08 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.20 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.43 8.08 -2.39 -0.02 0.41 16 34 H 0.34 5.34 7.05 -89.69 -0.63 4.70 16 35 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.06 1.48 7.51 -2.39 -0.02 1.47 16 37 H 0.41 6.35 7.83 -92.71 -0.73 5.63 16 38 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 39 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.11 1.42 8.14 -2.38 -0.02 1.41 16 42 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 43 H 0.11 1.59 6.91 -2.39 -0.02 1.58 16 44 H 0.08 1.60 7.93 -2.39 -0.02 1.58 16 45 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.19 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -79.22 401.22 1.20 -78.03 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.36 Total: 24.18 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 7.15 Total: -10.85 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -6.41 Total: -100.83 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.05 Total: -25.56 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -79.22 1.20 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713103708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.300 kcal (2) G-P(sol) polarization free energy of solvation -79.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds