Wall clock time and date at job start Tue Mar 31 2020 20:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34638 * 117.00135 * 2 1 4 4 O 1.21513 * 119.99867 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00235 * 180.02562 * 3 2 1 6 6 C 1.46498 * 119.99828 * 180.27525 * 5 3 2 7 7 H 1.08995 * 109.47013 * 324.72129 * 6 5 3 8 8 C 1.50696 * 109.47047 * 204.72109 * 6 5 3 9 9 O 1.21295 * 119.99999 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00288 * 179.97438 * 8 6 5 11 11 C 1.40156 * 119.99872 * 179.97438 * 10 8 6 12 12 C 1.40405 * 125.97619 * 359.71840 * 11 10 8 13 13 C 1.35243 * 107.86813 * 179.82845 * 12 11 10 14 14 C 1.50699 * 126.06995 * 180.18005 * 13 12 11 15 15 N 1.34972 * 107.85749 * 0.42807 * 13 12 11 16 16 C 1.46499 * 125.97269 * 179.69332 * 15 13 12 17 17 C 1.50709 * 109.46936 * 270.01901 * 16 15 13 18 18 H 1.07997 * 119.99988 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99870 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00353 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00144 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47097 * 90.00131 * 21 19 17 23 23 H 1.48506 * 109.47232 * 210.00128 * 21 19 17 24 24 H 1.48496 * 109.47105 * 330.00148 * 21 19 17 25 25 N 1.31223 * 125.96859 * 180.02562 * 11 10 8 26 26 C 1.52999 * 109.47257 * 84.72116 * 6 5 3 27 27 C 1.52997 * 109.47278 * 299.99798 * 26 6 5 28 28 C 1.52999 * 109.47156 * 59.99882 * 26 6 5 29 29 H 1.08995 * 109.47499 * 60.00396 * 1 2 3 30 30 H 1.08997 * 109.47194 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47576 * 300.00199 * 1 2 3 32 32 H 0.97001 * 119.99727 * 359.97438 * 5 3 2 33 33 H 0.96996 * 120.00043 * 0.02562 * 10 8 6 34 34 H 1.08002 * 126.06641 * 359.97438 * 12 11 10 35 35 H 1.08996 * 109.47088 * 270.29115 * 14 13 12 36 36 H 1.08994 * 109.47184 * 30.29598 * 14 13 12 37 37 H 1.09000 * 109.47086 * 150.29493 * 14 13 12 38 38 H 1.09000 * 109.47251 * 30.01743 * 16 15 13 39 39 H 1.09001 * 109.47550 * 150.02344 * 16 15 13 40 40 H 0.96991 * 120.00559 * 180.02562 * 20 19 17 41 41 H 1.09003 * 109.47054 * 179.97438 * 26 6 5 42 42 H 1.09003 * 109.47146 * 59.99973 * 27 26 6 43 43 H 1.08996 * 109.47253 * 180.02562 * 27 26 6 44 44 H 1.08995 * 109.47275 * 300.00159 * 27 26 6 45 45 H 1.09003 * 109.46926 * 60.00284 * 28 26 6 46 46 H 1.08998 * 109.47115 * 179.97438 * 28 26 6 47 47 H 1.08994 * 109.47213 * 300.00018 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.0742 2.5755 0.0056 7 1 3.4912 3.2830 -0.5840 8 6 5.4517 2.4402 -0.5902 9 8 5.8397 1.3597 -0.9818 10 7 6.2524 3.5199 -0.6888 11 6 7.5338 3.3938 -1.2424 12 6 8.1103 2.2085 -1.7262 13 6 9.3498 2.5047 -2.1790 14 6 10.3272 1.5333 -2.7891 15 7 9.5581 3.8237 -1.9824 16 6 10.7759 4.5629 -2.3240 17 6 11.7228 4.5402 -1.1517 18 1 11.4449 4.0269 -0.2430 19 6 12.9432 5.1756 -1.2389 20 7 13.7698 5.1555 -0.2161 21 14 13.4235 6.0641 -2.8103 22 1 12.9726 7.4772 -2.7376 23 1 14.8993 6.0231 -2.9710 24 1 12.7805 5.3985 -3.9716 25 7 8.4066 4.3620 -1.3940 26 6 4.1884 3.0830 1.4444 27 6 2.7898 3.2205 2.0493 28 6 5.0066 2.0899 2.2721 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 3.9374 0.4567 -0.0005 33 1 5.9421 4.3840 -0.3760 34 1 7.6455 1.2337 -1.7372 35 1 10.9464 1.0996 -2.0039 36 1 9.7807 0.7409 -3.3003 37 1 10.9614 2.0570 -3.5043 38 1 11.2538 4.0974 -3.1860 39 1 10.5195 5.5948 -2.5638 40 1 14.6282 5.6028 -0.2773 41 1 4.6836 4.0540 1.4490 42 1 2.2949 2.2492 2.0448 43 1 2.8711 3.5824 3.0742 44 1 2.2068 3.9279 1.4597 45 1 6.0031 1.9921 1.8412 46 1 5.0884 2.4517 3.2970 47 1 4.5119 1.1187 2.2676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271178310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:39 Heat of formation + Delta-G solvation = -34.213278 kcal Electronic energy + Delta-G solvation = -29720.222875 eV Core-core repulsion = 25519.548152 eV Total energy + Delta-G solvation = -4200.674723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35723 -40.72179 -39.69918 -37.44921 -35.90613 -35.15506 -33.56198 -33.24672 -31.64837 -31.19329 -28.81908 -27.62381 -27.31957 -26.69343 -26.44632 -22.95757 -22.08257 -21.88569 -20.31933 -19.85090 -19.71461 -18.82776 -17.36368 -17.16405 -17.07352 -16.58228 -16.36991 -15.79057 -15.61708 -15.07627 -14.86556 -14.50802 -14.42540 -13.98454 -13.93962 -13.65666 -13.30297 -13.23792 -12.65846 -12.63089 -12.46659 -12.39928 -12.36257 -12.24587 -11.94101 -11.75197 -11.65049 -11.34001 -11.28251 -11.21193 -10.95801 -10.84217 -10.80219 -10.64456 -10.12008 -10.02971 -9.82298 -9.63898 -9.47341 -8.81710 -8.09338 -7.59030 -6.29688 -4.33169 1.71834 2.05913 2.48761 2.63473 2.75952 3.12952 3.18571 3.21222 3.54283 3.61743 3.92307 4.18143 4.30407 4.37804 4.60861 4.81841 4.83212 4.89762 4.98569 5.08231 5.18550 5.26495 5.28647 5.47955 5.54253 5.63979 5.68893 5.74764 5.74904 5.89915 5.98818 6.00781 6.04444 6.10427 6.16303 6.29010 6.35912 6.44893 6.54065 6.64354 7.07802 7.24388 7.25637 7.42390 7.77742 7.97459 8.02784 8.26718 8.47463 8.75117 9.25192 10.82715 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.002292 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.794857 B =12211.610429 C =12679.122907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.653 3.347 4 O -0.568 6.568 5 N -0.688 5.688 6 C 0.156 3.844 7 H 0.122 0.878 8 C 0.521 3.479 9 O -0.509 6.509 10 N -0.622 5.622 11 C 0.266 3.734 12 C -0.286 4.286 13 C 0.096 3.904 14 C -0.086 4.086 15 N -0.315 5.315 16 C 0.231 3.769 17 C -0.541 4.541 18 H 0.081 0.919 19 C 0.079 3.921 20 N -0.886 5.886 21 Si 0.874 3.126 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.264 1.264 25 N -0.314 5.314 26 C -0.107 4.107 27 C -0.136 4.136 28 C -0.153 4.153 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.417 0.583 33 H 0.413 0.587 34 H 0.161 0.839 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.269 0.731 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.817 -8.670 0.468 24.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.284 6.284 3 C 0.406 3.594 4 O -0.457 6.457 5 N -0.349 5.349 6 C 0.048 3.952 7 H 0.140 0.860 8 C 0.305 3.695 9 O -0.382 6.382 10 N -0.270 5.270 11 C 0.013 3.987 12 C -0.317 4.317 13 C -0.035 4.035 14 C -0.144 4.144 15 N -0.097 5.097 16 C 0.112 3.888 17 C -0.579 4.579 18 H 0.099 0.901 19 C -0.125 4.125 20 N -0.522 5.522 21 Si 0.700 3.300 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.189 1.189 25 N -0.144 5.144 26 C -0.126 4.126 27 C -0.194 4.194 28 C -0.210 4.210 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.255 0.745 33 H 0.249 0.751 34 H 0.179 0.821 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.426 -7.627 0.385 23.691 hybrid contribution 0.263 -0.025 -0.551 0.611 sum -22.163 -7.652 -0.165 23.447 Atomic orbital electron populations 1.23208 0.74204 1.03540 1.02781 1.86260 1.24267 1.30862 1.87015 1.17896 0.83086 0.82311 0.76141 1.91016 1.64607 1.34545 1.55502 1.44160 1.03221 1.09808 1.77674 1.20767 0.90667 0.85514 0.98282 0.85997 1.20313 0.86224 0.84038 0.78900 1.90670 1.73991 1.26413 1.47126 1.42275 1.12119 1.12253 1.60368 1.18912 0.86059 0.93725 0.99957 1.21237 0.95618 0.99605 1.15268 1.21074 0.96138 0.86158 1.00112 1.20362 0.96867 0.96408 1.00754 1.48540 1.11523 1.05725 1.43864 1.20028 0.78584 0.92503 0.97682 1.21153 1.00142 1.36629 1.00009 0.90104 1.24808 0.95793 0.95411 0.96519 1.69865 1.09386 1.42754 1.30231 0.86893 0.78525 0.80970 0.83620 1.19614 1.20520 1.18902 1.77277 0.94157 1.20564 1.22440 1.21621 0.98562 1.00073 0.92393 1.21854 0.94681 1.02536 1.00303 1.21888 0.99837 0.99048 1.00238 0.91758 0.87952 0.91788 0.74456 0.75088 0.82119 0.90000 0.90612 0.91061 0.93159 0.93601 0.92082 0.89172 0.92831 0.92699 0.91400 0.92120 0.91789 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -3.52 10.62 -40.32 -0.43 -3.95 16 3 C 0.65 7.04 7.09 54.06 0.38 7.43 16 4 O -0.57 -7.04 13.24 -19.28 -0.26 -7.30 16 5 N -0.69 -6.93 4.08 -59.87 -0.24 -7.17 16 6 C 0.16 1.55 2.42 -69.09 -0.17 1.38 16 7 H 0.12 1.16 7.58 -51.93 -0.39 0.76 16 8 C 0.52 6.66 5.92 -10.99 -0.07 6.60 16 9 O -0.51 -7.79 12.97 5.54 0.07 -7.72 16 10 N -0.62 -8.67 5.34 -11.13 -0.06 -8.73 16 11 C 0.27 5.02 8.11 -154.39 -1.25 3.77 16 12 C -0.29 -5.48 9.52 -39.83 -0.38 -5.86 16 13 C 0.10 1.91 6.92 -82.28 -0.57 1.34 16 14 C -0.09 -1.37 10.11 36.00 0.36 -1.00 16 15 N -0.31 -7.04 3.59 -58.32 -0.21 -7.25 16 16 C 0.23 5.42 5.06 -5.19 -0.03 5.39 16 17 C -0.54 -14.85 9.94 -34.44 -0.34 -15.19 16 18 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 19 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 20 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 21 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 22 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 25 N -0.31 -6.82 12.59 31.44 0.40 -6.43 16 26 C -0.11 -0.94 2.70 -90.62 -0.25 -1.19 16 27 C -0.14 -1.22 7.71 37.16 0.29 -0.93 16 28 C -0.15 -1.45 8.79 37.16 0.33 -1.12 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.42 4.14 7.90 -40.82 -0.32 3.82 16 33 H 0.41 4.58 8.24 -40.82 -0.34 4.25 16 34 H 0.16 2.95 5.92 -52.49 -0.31 2.64 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.11 7.07 -51.93 -0.37 0.74 16 38 H 0.05 1.10 6.10 -51.93 -0.32 0.78 16 39 H 0.05 1.07 7.57 -51.93 -0.39 0.68 16 40 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 41 H 0.09 0.70 7.56 -51.93 -0.39 0.30 16 42 H 0.05 0.53 5.76 -51.93 -0.30 0.23 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 45 H 0.06 0.69 7.22 -51.93 -0.37 0.31 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -33.62 384.34 -6.39 -40.01 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.84 Total: 8.63 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -0.72 Total: 4.10 kcal Atomic # 7 Polarization: -55.39 SS G_CDS: 0.66 Total: -54.73 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.61 Total: -18.97 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.62 -6.39 -40.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271178310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.794 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds