Wall clock time and date at job start Tue Mar 31 2020 20:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00097 * 2 1 4 4 H 1.48503 * 109.47040 * 269.99867 * 3 2 1 5 5 H 1.48503 * 109.46997 * 29.99879 * 3 2 1 6 6 H 1.48498 * 109.47428 * 149.99971 * 3 2 1 7 7 C 1.37871 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99935 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46812 * 180.02562 * 9 7 2 11 11 C 1.34962 * 125.97823 * 125.00565 * 10 9 7 12 12 C 1.35242 * 107.86046 * 180.02562 * 11 10 9 13 13 C 1.40399 * 107.87163 * 359.97438 * 12 11 10 14 14 N 1.40187 * 125.97799 * 179.97438 * 13 12 11 15 15 C 1.34781 * 119.99996 * 0.02562 * 14 13 12 16 16 O 1.21596 * 119.99641 * 0.02562 * 15 14 13 17 17 N 1.34770 * 120.00340 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00371 * 179.97438 * 17 15 14 19 19 C 1.52995 * 109.47327 * 180.02562 * 18 17 15 20 20 H 1.08995 * 109.47710 * 54.99928 * 19 18 17 21 21 C 1.53005 * 109.47262 * 295.00022 * 19 18 17 22 22 O 1.42899 * 109.46913 * 64.99815 * 21 19 18 23 23 C 1.53001 * 109.47083 * 175.00410 * 19 18 17 24 24 H 1.09001 * 110.81080 * 56.37199 * 23 19 18 25 25 C 1.54818 * 110.90886 * 179.97438 * 23 19 18 26 26 C 1.54097 * 104.18808 * 139.07334 * 25 23 19 27 27 O 1.43745 * 107.29442 * 2.03270 * 26 25 23 28 28 C 1.44382 * 106.97554 * 333.48168 * 27 26 25 29 29 N 1.31217 * 108.04891 * 0.26174 * 13 12 11 30 30 H 0.97000 * 119.99621 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.46725 * 60.00644 * 9 7 2 32 32 H 1.09000 * 109.46908 * 299.99728 * 9 7 2 33 33 H 1.08001 * 126.07099 * 0.02562 * 11 10 9 34 34 H 1.08003 * 126.06461 * 179.97438 * 12 11 10 35 35 H 0.97000 * 120.00436 * 179.97438 * 14 13 12 36 36 H 0.97004 * 120.00048 * 0.02562 * 17 15 14 37 37 H 1.09000 * 109.47173 * 59.99824 * 18 17 15 38 38 H 1.09002 * 109.47319 * 300.00215 * 18 17 15 39 39 H 1.08995 * 109.47099 * 185.00258 * 21 19 18 40 40 H 1.09005 * 109.46573 * 305.00138 * 21 19 18 41 41 H 0.96705 * 113.99856 * 180.02562 * 22 21 19 42 42 H 1.09004 * 110.48564 * 20.40044 * 25 23 19 43 43 H 1.08997 * 110.48807 * 257.75366 * 25 23 19 44 44 H 1.08998 * 109.88273 * 242.60534 * 26 25 23 45 45 H 1.08998 * 110.00322 * 121.52715 * 26 25 23 46 46 H 1.08999 * 110.61481 * 158.56165 * 28 27 26 47 47 H 1.08997 * 110.62085 * 281.56061 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8941 12 6 3.2611 -5.4422 0.5499 13 6 3.8692 -4.9144 -0.6002 14 7 4.9659 -5.4646 -1.2782 15 6 5.5310 -6.6042 -0.8327 16 8 5.0892 -7.1554 0.1570 17 7 6.5850 -7.1335 -1.4848 18 6 7.1996 -8.3719 -1.0002 19 6 8.3672 -8.7528 -1.9126 20 1 9.0649 -7.9180 -1.9776 21 6 7.8365 -9.0838 -3.3090 22 8 7.2677 -7.9100 -3.8928 23 6 9.0862 -9.9748 -1.3375 24 1 8.3924 -10.8047 -1.2033 25 6 10.2758 -10.3900 -2.2371 26 6 11.3943 -10.7520 -1.2408 27 8 10.8535 -10.6007 0.0824 28 6 9.7945 -9.6232 -0.0044 29 7 3.2353 -3.8126 -0.9260 30 1 -0.4849 0.8401 -0.0004 31 1 0.6241 -2.5567 -0.8904 32 1 0.6247 -2.5571 0.8897 33 1 1.5775 -4.7526 1.7354 34 1 3.5550 -6.3432 1.0679 35 1 5.3177 -5.0256 -2.0684 36 1 6.9372 -6.6941 -2.2746 37 1 6.4586 -9.1713 -1.0050 38 1 7.5662 -8.2225 0.0153 39 1 8.6554 -9.4402 -3.9338 40 1 7.0733 -9.8584 -3.2334 41 1 6.9101 -8.0463 -4.7810 42 1 10.5837 -9.5580 -2.8704 43 1 10.0110 -11.2554 -2.8445 44 1 12.2416 -10.0794 -1.3741 45 1 11.7121 -11.7831 -1.3956 46 1 9.1066 -9.7271 0.8347 47 1 10.2054 -8.6143 -0.0425 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619536607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:20 Heat of formation + Delta-G solvation = -44.118113 kcal Electronic energy + Delta-G solvation = -28740.185779 eV Core-core repulsion = 24539.081550 eV Total energy + Delta-G solvation = -4201.104229 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.68725 -40.27639 -39.37393 -37.80335 -35.45824 -34.53077 -33.73551 -33.20503 -31.05766 -30.46616 -29.21294 -28.70971 -26.79908 -25.95669 -23.27355 -23.07468 -22.42332 -21.41762 -20.81148 -20.19246 -19.63749 -18.13755 -17.61039 -17.12183 -16.60334 -16.50878 -16.27827 -16.01538 -15.55615 -15.37330 -15.07806 -14.72809 -14.59485 -14.19970 -14.01716 -13.95616 -13.76732 -13.33077 -13.09889 -12.73654 -12.39061 -12.27711 -12.15038 -12.05701 -11.87172 -11.72091 -11.52091 -11.25374 -11.04977 -10.97818 -10.86076 -10.44297 -10.33885 -10.21855 -10.14827 -9.98027 -9.59411 -9.43431 -9.04675 -8.59684 -8.01747 -7.32755 -6.20679 -4.25421 2.50057 2.76163 3.21528 3.26142 3.31693 3.36994 3.40114 3.49200 3.73512 3.94192 4.00065 4.24761 4.27918 4.35679 4.39461 4.57135 4.63062 4.69158 4.70087 4.87051 5.01487 5.08396 5.14331 5.14384 5.20513 5.27198 5.32773 5.40388 5.50579 5.54002 5.63420 5.76134 5.89582 6.35009 6.38152 6.45246 6.62055 6.70450 6.95020 7.07254 7.12655 7.27603 7.59785 7.74246 7.89918 8.11218 8.14552 8.73879 8.74675 8.86141 9.39947 10.87926 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021881 B = 0.001847 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.335904 B =15158.326326 C =15276.407109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.259 3.741 10 N -0.322 5.322 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.277 3.723 14 N -0.644 5.644 15 C 0.711 3.289 16 O -0.575 6.575 17 N -0.734 5.734 18 C 0.148 3.852 19 C -0.092 4.092 20 H 0.090 0.910 21 C 0.081 3.919 22 O -0.573 6.573 23 C -0.112 4.112 24 H 0.094 0.906 25 C -0.153 4.153 26 C 0.046 3.954 27 O -0.377 6.377 28 C 0.050 3.950 29 N -0.309 5.309 30 H 0.267 0.733 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.167 0.833 34 H 0.160 0.840 35 H 0.406 0.594 36 H 0.406 0.594 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.385 0.615 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.996 -22.604 -7.581 31.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.104 5.104 11 C -0.100 4.100 12 C -0.318 4.318 13 C 0.023 3.977 14 N -0.294 5.294 15 C 0.410 3.590 16 O -0.451 6.451 17 N -0.393 5.393 18 C 0.023 3.977 19 C -0.111 4.111 20 H 0.108 0.892 21 C 0.003 3.997 22 O -0.379 6.379 23 C -0.131 4.131 24 H 0.113 0.887 25 C -0.191 4.191 26 C -0.031 4.031 27 O -0.296 6.296 28 C -0.026 4.026 29 N -0.141 5.141 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.241 0.759 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.233 0.767 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 19.546 -21.786 -6.742 30.035 hybrid contribution 0.501 0.573 -1.041 1.289 sum 20.047 -21.213 -7.782 30.206 Atomic orbital electron populations 1.69923 1.06020 1.27542 1.49944 1.24947 0.94986 0.99526 0.94692 0.86328 0.79665 0.82172 0.78320 1.20377 1.21023 1.19742 1.21272 0.94013 0.89418 1.51797 0.91307 1.19718 0.85641 0.81339 0.99189 1.49032 1.23157 1.19761 1.18414 1.22544 1.00356 0.90364 0.96749 1.21517 1.02031 1.06483 1.01764 1.18802 0.90675 0.93901 0.94296 1.41379 1.31401 1.25240 1.31345 1.15664 0.80203 0.80156 0.82943 1.90852 1.64730 1.62543 1.26984 1.45044 1.33612 1.27744 1.32938 1.21128 0.93506 0.86133 0.96888 1.21419 0.97388 0.98272 0.93972 0.89215 1.22237 0.96668 0.87491 0.93266 1.86259 1.80516 1.35224 1.35928 1.22639 0.97175 0.97692 0.95628 0.88741 1.23052 0.94954 1.02434 0.98631 1.23158 0.95906 1.01835 0.82240 1.88909 1.51489 1.61261 1.27949 1.23684 0.88845 0.92687 0.97410 1.77322 1.03840 1.16249 1.16643 0.92386 0.93797 0.92585 0.81608 0.82216 0.75914 0.75547 0.91553 0.91395 0.93223 0.93203 0.76701 0.90209 0.90197 0.92323 0.89832 0.88263 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.87 9.23 -34.44 -0.32 -15.19 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.26 6.70 6.26 -5.19 -0.03 6.67 16 10 N -0.32 -7.68 3.67 -62.56 -0.23 -7.91 16 11 C 0.05 1.03 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.95 9.61 -39.84 -0.38 -6.33 16 13 C 0.28 5.82 8.11 -154.37 -1.25 4.56 16 14 N -0.64 -10.63 5.46 -15.51 -0.08 -10.71 16 15 C 0.71 11.08 8.53 -86.92 -0.74 10.34 16 16 O -0.57 -10.79 13.47 5.28 0.07 -10.72 16 17 N -0.73 -7.99 5.01 -65.23 -0.33 -8.32 16 18 C 0.15 1.30 4.99 -4.05 -0.02 1.28 16 19 C -0.09 -0.51 1.71 -90.62 -0.15 -0.66 16 20 H 0.09 0.52 8.09 -51.93 -0.42 0.10 16 21 C 0.08 0.38 6.28 37.16 0.23 0.61 16 22 O -0.57 -3.17 10.88 -35.23 -0.38 -3.56 16 23 C -0.11 -0.55 2.66 -88.60 -0.24 -0.79 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 25 C -0.15 -0.60 5.52 -25.20 -0.14 -0.74 16 26 C 0.05 0.25 7.70 37.73 0.29 0.54 16 27 O -0.38 -3.17 11.52 -35.23 -0.41 -3.58 16 28 C 0.05 0.33 6.36 38.21 0.24 0.57 16 29 N -0.31 -7.33 12.42 31.44 0.39 -6.94 16 30 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.42 8.07 -51.93 -0.42 1.00 16 33 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 34 H 0.16 3.27 5.91 -52.48 -0.31 2.96 16 35 H 0.41 5.59 8.84 -40.82 -0.36 5.22 16 36 H 0.41 3.80 6.30 -40.82 -0.26 3.54 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.63 7.27 -51.93 -0.38 0.26 16 39 H 0.05 0.16 6.90 -51.93 -0.36 -0.19 16 40 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.38 0.84 9.12 45.56 0.42 1.25 16 42 H 0.08 0.27 7.52 -51.93 -0.39 -0.12 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.10 0.63 7.97 -51.93 -0.41 0.22 16 47 H 0.07 0.41 8.01 -51.93 -0.42 -0.01 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -35.35 385.60 -8.48 -43.83 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.24 Total: 7.08 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.80 Total: 3.29 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.49 Total: -58.74 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.72 Total: -17.86 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.35 -8.48 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619536607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.289 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds