Wall clock time and date at job start Tue Mar 31 2020 21:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.30017 * 127.33653 * 2 1 4 4 O 1.20655 * 112.29759 * 180.29077 * 3 2 1 5 5 C 1.33488 * 113.15850 * 359.73416 * 4 3 2 6 6 C 1.50709 * 126.82675 * 180.02562 * 5 4 3 7 7 C 1.37352 * 106.34363 * 0.02562 * 5 4 3 8 8 C 1.47406 * 128.56487 * 179.97438 * 7 5 4 9 9 O 1.21605 * 119.99753 * 89.72357 * 8 7 5 10 10 N 1.34777 * 119.99965 * 269.99390 * 8 7 5 11 11 C 1.46504 * 119.99854 * 0.02562 * 10 8 7 12 12 C 1.46496 * 119.99875 * 179.97438 * 10 8 7 13 13 H 1.08995 * 109.47307 * 0.02562 * 12 10 8 14 14 C 1.53008 * 109.46930 * 120.00391 * 12 10 8 15 15 C 1.53001 * 109.47344 * 240.00338 * 12 10 8 16 16 N 1.46896 * 109.46853 * 55.00175 * 15 12 10 17 17 C 1.46906 * 110.99883 * 180.02562 * 16 15 12 18 18 C 1.50693 * 109.47372 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00071 * 359.97438 * 18 17 16 20 20 N 1.34776 * 120.00293 * 179.97438 * 18 17 16 21 21 C 1.37093 * 120.00056 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00576 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00141 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99472 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00207 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47051 * 60.00167 * 25 23 21 27 27 H 1.48500 * 109.47235 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47478 * 300.00036 * 25 23 21 29 29 H 1.09001 * 109.46981 * 270.12771 * 1 2 3 30 30 H 1.08998 * 109.46647 * 30.12595 * 1 2 3 31 31 H 1.08994 * 109.47246 * 150.12371 * 1 2 3 32 32 H 1.08998 * 109.47304 * 269.97660 * 6 5 4 33 33 H 1.08998 * 109.46906 * 29.98095 * 6 5 4 34 34 H 1.08998 * 109.46793 * 149.97729 * 6 5 4 35 35 H 1.08999 * 109.46901 * 89.99723 * 11 10 8 36 36 H 1.08999 * 109.46626 * 210.00015 * 11 10 8 37 37 H 1.08996 * 109.47068 * 329.99428 * 11 10 8 38 38 H 1.08992 * 109.47163 * 180.02562 * 14 12 10 39 39 H 1.09004 * 109.46786 * 299.99946 * 14 12 10 40 40 H 1.08999 * 109.46519 * 59.99650 * 14 12 10 41 41 H 1.09000 * 109.47391 * 175.00609 * 15 12 10 42 42 H 1.09007 * 109.46628 * 295.00124 * 15 12 10 43 43 H 1.00905 * 111.00032 * 303.94960 * 16 15 12 44 44 H 1.09002 * 109.46615 * 300.00195 * 17 16 15 45 45 H 1.09007 * 109.46833 * 59.99795 * 17 16 15 46 46 H 0.96997 * 120.00031 * 359.97438 * 20 18 17 47 47 H 0.97008 * 119.99874 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0057 5 6 3.6494 -0.6008 -0.0048 6 6 4.9712 -1.3247 -0.0102 7 6 2.3992 -1.1696 0.0020 8 6 2.0401 -2.5992 0.0051 9 8 1.9021 -3.1892 1.0595 10 7 1.8700 -3.2539 -1.1607 11 6 2.0425 -2.5447 -2.4310 12 6 1.5136 -4.6748 -1.1576 13 1 1.4302 -5.0263 -0.1292 14 6 0.1740 -4.8662 -1.8717 15 6 2.5974 -5.4741 -1.8838 16 7 3.9036 -5.1965 -1.2716 17 6 4.9711 -5.9480 -1.9451 18 6 6.2930 -5.6380 -1.2915 19 8 6.3413 -4.8664 -0.3569 20 7 7.4218 -6.2179 -1.7455 21 6 8.6243 -5.9362 -1.1505 22 1 8.6674 -5.2492 -0.3183 23 6 9.7880 -6.5346 -1.6182 24 7 9.7357 -7.3702 -2.6311 25 14 11.4266 -6.1502 -0.8081 26 1 11.3739 -6.5390 0.6241 27 1 12.5055 -6.9114 -1.4877 28 1 11.7030 -4.6952 -0.9161 29 1 -0.3633 0.0023 1.0277 30 1 -0.3632 0.8889 -0.5158 31 1 -0.3633 -0.8910 -0.5119 32 1 5.2848 -1.5010 -1.0391 33 1 5.7199 -0.7178 0.4990 34 1 4.8649 -2.2789 0.5058 35 1 3.0819 -2.6195 -2.7505 36 1 1.3968 -2.9913 -3.1870 37 1 1.7772 -1.4956 -2.3003 38 1 -0.0914 -5.9233 -1.8690 39 1 -0.5981 -4.2968 -1.3542 40 1 0.2571 -4.5146 -2.9000 41 1 2.3781 -6.5389 -1.8049 42 1 2.6197 -5.1846 -2.9345 43 1 4.1013 -4.2070 -1.2744 44 1 4.7683 -7.0162 -1.8669 45 1 5.0097 -5.6615 -2.9961 46 1 7.3832 -6.8353 -2.4926 47 1 10.5481 -7.7877 -2.9579 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753694376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:36:24 Heat of formation + Delta-G solvation = -7.232044 kcal Electronic energy + Delta-G solvation = -30364.612066 eV Core-core repulsion = 26165.107338 eV Total energy + Delta-G solvation = -4199.504729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.96276 -40.13484 -38.29493 -36.92601 -34.88122 -34.52972 -33.82812 -33.57986 -31.71897 -31.20326 -28.99247 -28.00740 -27.64035 -27.13366 -25.17239 -24.61464 -23.21013 -21.58085 -20.29708 -19.42521 -19.09644 -18.06969 -17.90827 -17.66719 -16.81154 -16.40612 -16.06710 -15.61787 -15.16421 -14.57306 -14.43804 -14.34158 -13.94259 -13.88837 -13.71490 -13.52754 -13.48797 -13.29095 -13.12821 -13.02718 -12.75626 -12.67178 -12.52505 -12.48826 -12.41004 -11.91731 -11.69689 -11.62062 -11.45062 -11.19920 -11.08515 -10.97314 -10.45807 -10.23448 -10.22907 -9.98957 -9.51461 -9.40052 -8.89936 -8.45412 -8.07393 -7.97591 -6.43510 -3.84282 1.23867 1.75928 2.34660 2.63348 3.02436 3.18822 3.24920 3.29106 3.88121 3.88980 4.04454 4.13073 4.25270 4.49728 4.78814 4.85054 4.86672 4.95441 5.06826 5.07431 5.14530 5.17728 5.23465 5.24200 5.33398 5.36625 5.36860 5.39868 5.48589 5.52279 5.58841 5.68349 5.74919 5.78866 5.82746 5.94818 5.99464 6.09912 6.23927 6.38456 7.14471 7.17813 7.53263 7.61795 8.02147 8.04171 8.10221 8.59286 9.15976 9.52353 10.03555 10.74143 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.003042 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.243335 B = 9201.887471 C =10788.731504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.050 3.950 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.033 3.967 6 C -0.083 4.083 7 C -0.256 4.256 8 C 0.606 3.394 9 O -0.512 6.512 10 N -0.601 5.601 11 C 0.076 3.924 12 C 0.137 3.863 13 H 0.113 0.887 14 C -0.159 4.159 15 C 0.050 3.950 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.441 3.559 19 O -0.581 6.581 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.285 1.285 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.084 0.916 42 H 0.029 0.971 43 H 0.346 0.654 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.950 9.074 -3.815 21.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 N -0.066 5.066 4 O 0.032 5.968 5 C -0.030 4.030 6 C -0.140 4.140 7 C -0.263 4.263 8 C 0.392 3.608 9 O -0.386 6.386 10 N -0.335 5.335 11 C -0.067 4.067 12 C 0.034 3.966 13 H 0.130 0.870 14 C -0.218 4.218 15 C -0.081 4.081 16 N -0.296 5.296 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.114 0.886 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.047 0.953 43 H 0.166 0.834 44 H 0.105 0.895 45 H 0.059 0.941 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.076 10.007 -2.210 21.655 hybrid contribution 0.923 -0.564 -1.135 1.568 sum -18.153 9.444 -3.345 20.734 Atomic orbital electron populations 1.20181 0.85387 1.03752 1.03866 1.24686 0.98374 0.86679 1.01518 1.73600 0.89262 1.23441 1.20323 1.84532 1.21304 1.22910 1.68046 1.24894 0.97786 0.83255 0.97064 1.20601 0.88239 1.00038 1.05171 1.21810 0.92885 0.95128 1.16481 1.16841 0.76422 0.83870 0.83634 1.90835 1.49417 1.67667 1.30724 1.47751 1.69540 1.10499 1.05742 1.21767 1.01895 0.97343 0.85727 1.21242 0.93209 0.79089 1.03033 0.86953 1.22113 0.96342 1.02733 1.00602 1.22341 0.89895 1.00465 0.95393 1.60015 0.99968 1.13847 1.55765 1.21697 0.91575 0.99637 0.95396 1.19774 0.84799 0.85796 0.87040 1.90509 1.86347 1.39148 1.30545 1.41855 1.05824 1.40769 1.31518 1.19645 0.83068 1.25354 1.14814 0.87945 1.25257 0.99854 0.96276 0.96509 1.69604 1.29913 1.29468 1.25367 0.85927 0.80641 0.78539 0.79186 1.19863 1.21005 1.19900 0.89697 0.90044 0.90120 0.88551 0.89050 0.87357 0.92541 0.90533 0.91187 0.90922 0.92020 0.92260 0.89747 0.95283 0.83435 0.89547 0.94118 0.77513 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.49 36.01 0.38 -0.25 16 2 C 0.05 0.60 7.36 -79.76 -0.59 0.01 16 3 N -0.36 -4.72 12.01 34.78 0.42 -4.30 16 4 O 0.09 1.21 11.06 18.67 0.21 1.41 16 5 C 0.03 0.42 7.55 -34.63 -0.26 0.16 16 6 C -0.08 -1.03 10.33 36.01 0.37 -0.65 16 7 C -0.26 -3.34 4.43 -102.89 -0.46 -3.80 16 8 C 0.61 8.55 7.46 -12.53 -0.09 8.45 16 9 O -0.51 -9.22 16.43 5.27 0.09 -9.14 16 10 N -0.60 -6.69 1.83 -175.21 -0.32 -7.01 16 11 C 0.08 0.64 9.40 59.85 0.56 1.21 16 12 C 0.14 1.48 2.95 -67.93 -0.20 1.28 16 13 H 0.11 1.51 6.90 -51.93 -0.36 1.16 16 14 C -0.16 -1.19 9.17 37.16 0.34 -0.84 16 15 C 0.05 0.57 5.03 -3.83 -0.02 0.55 16 16 N -0.66 -10.47 6.12 -115.05 -0.70 -11.17 16 17 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 18 C 0.44 10.03 7.82 -10.99 -0.09 9.95 16 19 O -0.58 -15.04 15.78 5.55 0.09 -14.95 16 20 N -0.56 -13.88 5.29 -10.97 -0.06 -13.93 16 21 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.18 13.05 55.50 0.72 -23.46 16 25 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 28 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.11 1.63 8.11 -51.93 -0.42 1.21 16 35 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 36 H 0.08 0.49 6.43 -51.93 -0.33 0.15 16 37 H 0.07 0.58 6.70 -51.93 -0.35 0.23 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.37 6.66 -51.93 -0.35 0.03 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 43 H 0.35 5.68 7.54 -39.29 -0.30 5.39 16 44 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 46 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 398.86 15.07 6.01 6.01 Total: -1.00 -33.30 398.86 -5.89 -39.19 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -6.99 Total: 12.54 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.32 Total: 9.06 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.06 Total: -59.88 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.38 Total: -22.68 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.30 -5.89 -39.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753694376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.957 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds