Wall clock time and date at job start Tue Mar 31 2020 21:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29949 * 126.28586 * 2 1 4 4 O 1.21303 * 110.24914 * 180.26448 * 3 2 1 5 5 C 1.33639 * 109.81253 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55129 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.50747 * 195.02547 * 6 5 4 8 8 C 1.53099 * 109.50447 * 74.93980 * 6 5 4 9 9 O 1.43023 * 109.25479 * 183.26271 * 8 6 5 10 10 C 1.43025 * 113.77742 * 58.59947 * 9 8 6 11 11 C 1.53097 * 109.25670 * 301.35392 * 10 9 8 12 12 N 1.47014 * 109.25746 * 56.85036 * 11 10 9 13 13 C 1.46898 * 111.00375 * 177.60774 * 12 11 10 14 14 C 1.53002 * 109.46880 * 313.63293 * 13 12 11 15 15 C 1.50693 * 109.47360 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00225 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00379 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99927 * 359.97438 * 17 15 14 19 19 C 1.46499 * 120.00275 * 180.02562 * 17 15 14 20 20 C 1.50695 * 109.47671 * 89.99529 * 19 17 15 21 21 H 1.08004 * 119.99653 * 359.97438 * 20 19 17 22 22 C 1.37877 * 120.00202 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99900 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99877 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47206 * 90.00268 * 24 22 20 26 26 H 1.48502 * 109.46992 * 209.99924 * 24 22 20 27 27 H 1.48496 * 109.47547 * 330.00055 * 24 22 20 28 28 N 1.31128 * 106.89861 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.46802 * 269.69218 * 1 2 3 30 30 H 1.09001 * 109.46962 * 29.68458 * 1 2 3 31 31 H 1.08992 * 109.47269 * 149.69070 * 1 2 3 32 32 H 1.08996 * 109.50702 * 303.14594 * 8 6 5 33 33 H 1.08994 * 109.51030 * 63.28224 * 8 6 5 34 34 H 1.08992 * 109.50424 * 181.42038 * 10 9 8 35 35 H 1.08997 * 109.50203 * 61.28606 * 10 9 8 36 36 H 1.09001 * 109.50603 * 296.91558 * 11 10 9 37 37 H 1.09000 * 109.50345 * 176.78000 * 11 10 9 38 38 H 1.08997 * 109.47117 * 73.62992 * 13 12 11 39 39 H 1.08993 * 109.47460 * 193.63127 * 13 12 11 40 40 H 1.09005 * 109.47236 * 299.99945 * 14 13 12 41 41 H 1.09003 * 109.47150 * 59.99765 * 14 13 12 42 42 H 1.09000 * 109.47262 * 90.00256 * 18 17 15 43 43 H 1.08999 * 109.47262 * 210.00722 * 18 17 15 44 44 H 1.09007 * 109.46858 * 330.00318 * 18 17 15 45 45 H 1.09001 * 109.46939 * 209.99434 * 19 17 15 46 46 H 1.08999 * 109.47124 * 329.98917 * 19 17 15 47 47 H 0.96997 * 119.99817 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0053 5 6 3.5299 -0.6211 -0.0098 6 6 4.7969 -1.4369 -0.0175 7 1 4.5647 -2.4674 -0.2861 8 6 5.4353 -1.4027 1.3736 9 8 6.6754 -2.1145 1.3411 10 6 7.6153 -1.5927 0.3977 11 6 6.9983 -1.6298 -1.0029 12 7 5.7373 -0.8741 -0.9975 13 6 5.1399 -0.8370 -2.3390 14 6 6.2167 -0.4848 -3.3672 15 6 5.6041 -0.4473 -4.7435 16 8 4.4226 -0.6799 -4.8879 17 7 6.3694 -0.1564 -5.8141 18 6 7.7967 0.1240 -5.6398 19 6 5.7737 -0.1194 -7.1520 20 6 5.2787 1.2738 -7.4433 21 1 5.3958 2.0537 -6.7054 22 6 4.6755 1.5526 -8.6514 23 7 4.2441 2.7687 -8.9057 24 14 4.4725 0.2035 -9.9273 25 1 3.1723 -0.4831 -9.7191 26 1 4.5054 0.7993 -11.2871 27 1 5.5782 -0.7781 -9.7901 28 7 2.3030 -1.0840 -0.0063 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8928 -0.5089 31 1 -0.3633 -0.8871 -0.5186 32 1 5.6178 -0.3684 1.6650 33 1 4.7646 -1.8714 2.0936 34 1 8.5208 -2.1992 0.4127 35 1 7.8610 -0.5637 0.6601 36 1 6.8018 -2.6637 -1.2868 37 1 7.6888 -1.1805 -1.7167 38 1 4.7171 -1.8134 -2.5756 39 1 4.3523 -0.0840 -2.3653 40 1 6.6396 0.4916 -3.1306 41 1 7.0044 -1.2379 -3.3409 42 1 8.3616 -0.8050 -5.7173 43 1 8.1281 0.8164 -6.4137 44 1 7.9623 0.5693 -4.6587 45 1 6.5235 -0.4006 -7.8915 46 1 4.9387 -0.8186 -7.1974 47 1 3.8194 2.9647 -9.7555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161229577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:39 Heat of formation + Delta-G solvation = 11.185385 kcal Electronic energy + Delta-G solvation = -30239.477689 eV Core-core repulsion = 26040.771601 eV Total energy + Delta-G solvation = -4198.706089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.72422 -40.32492 -39.09731 -36.58667 -36.19026 -34.98693 -33.97246 -32.60304 -31.40639 -31.09096 -29.23961 -28.71458 -27.27558 -25.89017 -25.40673 -23.64483 -23.41133 -22.40358 -21.53131 -20.32072 -18.59316 -18.23248 -17.78739 -17.00659 -16.95033 -16.56274 -16.20196 -15.96013 -15.74850 -15.64011 -15.07752 -14.84952 -14.23063 -14.10281 -14.00299 -13.76182 -13.52723 -13.29519 -12.98040 -12.74396 -12.63526 -12.43617 -12.35245 -12.31570 -12.06031 -11.92413 -11.68278 -11.60509 -11.41386 -11.25283 -11.16020 -11.01580 -10.85651 -10.54403 -10.34861 -10.17506 -9.88576 -9.57203 -9.09605 -8.84973 -8.61133 -7.76252 -6.10673 -4.09835 0.96186 2.03804 2.53118 2.98750 3.26422 3.27063 3.32729 3.33788 3.34975 3.61741 3.84975 3.97916 4.23395 4.37417 4.50879 4.52971 4.65117 4.80017 4.85045 4.98232 5.03685 5.08616 5.16339 5.17764 5.23311 5.23394 5.28857 5.36799 5.39175 5.47378 5.49950 5.59462 5.71254 5.77258 5.80237 5.86477 5.92065 6.12095 6.41697 6.48203 6.63112 6.65661 6.90230 7.27678 7.58253 8.03921 8.17853 8.44246 8.87688 8.94090 9.49184 11.02736 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.003176 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.721587 B = 8813.429544 C =10647.856610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.381 5.381 4 O 0.098 5.902 5 C 0.189 3.811 6 C 0.144 3.856 7 H 0.099 0.901 8 C 0.075 3.925 9 O -0.374 6.374 10 C 0.058 3.942 11 C 0.011 3.989 12 N -0.530 5.530 13 C 0.069 3.931 14 C -0.140 4.140 15 C 0.507 3.493 16 O -0.542 6.542 17 N -0.597 5.597 18 C 0.083 3.917 19 C 0.215 3.785 20 C -0.530 4.530 21 H 0.074 0.926 22 C 0.072 3.928 23 N -0.897 5.897 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.266 1.266 28 N -0.475 5.475 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.052 0.948 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.045 0.955 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.030 0.970 46 H 0.036 0.964 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 -9.965 21.907 24.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.087 5.087 4 O 0.038 5.962 5 C -0.032 4.032 6 C 0.033 3.967 7 H 0.116 0.884 8 C -0.004 4.004 9 O -0.292 6.292 10 C -0.018 4.018 11 C -0.116 4.116 12 N -0.257 5.257 13 C -0.058 4.058 14 C -0.180 4.180 15 C 0.293 3.707 16 O -0.420 6.420 17 N -0.329 5.329 18 C -0.061 4.061 19 C 0.095 3.905 20 C -0.569 4.569 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.191 1.191 28 N -0.210 5.210 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.122 0.878 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.109 0.891 42 H 0.064 0.936 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.048 0.952 46 H 0.054 0.946 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.681 -9.132 21.916 24.200 hybrid contribution -0.252 -1.014 -1.434 1.774 sum 4.429 -10.146 20.483 23.283 Atomic orbital electron populations 1.20150 0.82807 1.05014 1.04116 1.25899 1.00657 0.83303 1.00730 1.74686 0.89476 1.23879 1.20637 1.85355 1.22001 1.24189 1.64618 1.28128 0.95872 0.82486 0.96706 1.20768 0.84563 0.94760 0.96575 0.88360 1.22658 0.86060 0.98695 0.92954 1.88051 1.24613 1.56427 1.60117 1.22828 0.91834 1.00402 0.86783 1.23013 0.91813 0.97455 0.99336 1.62361 1.04028 1.52413 1.06919 1.21941 0.96785 1.02075 0.85014 1.21769 0.99080 1.04324 0.92829 1.20217 0.86833 0.77777 0.85864 1.90686 1.15627 1.49726 1.85969 1.47835 1.08767 1.67741 1.08569 1.21682 0.81757 1.00274 1.02419 1.19665 0.94045 0.98551 0.78253 1.21327 1.38984 0.94311 1.02258 0.90777 1.24865 0.94687 0.95434 0.98039 1.69899 1.39872 1.19509 1.24218 0.86842 0.79383 0.82370 0.81029 1.19925 1.21001 1.19082 1.71865 0.99423 1.29692 1.19992 0.89386 0.89286 0.88938 0.91004 0.87464 0.87714 0.91486 0.92955 0.87810 0.93107 0.89852 0.88043 0.89108 0.93633 0.90493 0.92015 0.95198 0.94623 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.58 10.51 36.01 0.38 -0.20 16 2 C 0.17 2.24 8.22 -156.37 -1.28 0.96 16 3 N -0.38 -5.69 12.16 30.90 0.38 -5.31 16 4 O 0.10 1.40 11.19 18.11 0.20 1.60 16 5 C 0.19 2.40 5.93 -13.06 -0.08 2.32 16 6 C 0.14 1.46 2.49 -68.75 -0.17 1.29 16 7 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.07 0.61 6.28 37.21 0.23 0.84 16 9 O -0.37 -3.20 10.82 -35.23 -0.38 -3.58 16 10 C 0.06 0.39 7.01 37.21 0.26 0.65 16 11 C 0.01 0.09 4.94 -3.71 -0.02 0.07 16 12 N -0.53 -5.56 4.68 -227.73 -1.07 -6.62 16 13 C 0.07 0.95 4.02 -3.82 -0.02 0.93 16 14 C -0.14 -1.88 3.52 -27.89 -0.10 -1.98 16 15 C 0.51 10.06 7.67 -10.99 -0.08 9.98 16 16 O -0.54 -13.33 15.56 5.56 0.09 -13.24 16 17 N -0.60 -12.05 2.86 -182.96 -0.52 -12.58 16 18 C 0.08 1.19 10.24 59.85 0.61 1.81 16 19 C 0.22 5.28 4.23 -5.20 -0.02 5.25 16 20 C -0.53 -15.37 9.94 -34.44 -0.34 -15.71 16 21 H 0.07 2.36 8.06 -52.48 -0.42 1.94 16 22 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 23 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 24 Si 0.88 21.68 27.47 -169.99 -4.67 17.01 16 25 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 28 N -0.47 -6.50 11.55 -9.87 -0.11 -6.61 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.10 0.67 6.05 -51.93 -0.31 0.36 16 38 H 0.05 0.75 8.03 -51.93 -0.42 0.33 16 39 H 0.08 1.41 7.28 -51.93 -0.38 1.03 16 40 H 0.10 1.26 7.40 -51.93 -0.38 0.88 16 41 H 0.09 0.93 6.24 -51.93 -0.32 0.60 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 45 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 46 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 47 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -37.12 382.75 -7.39 -44.51 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -7.11 Total: -2.07 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -0.73 Total: 8.23 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.55 Total: -58.23 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.09 Total: -15.22 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.12 -7.39 -44.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161229577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.695 kcal (2) G-P(sol) polarization free energy of solvation -37.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds