Wall clock time and date at job start Tue Mar 31 2020 21:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29949 * 126.28586 * 2 1 4 4 O 1.21303 * 110.24914 * 180.26448 * 3 2 1 5 5 C 1.33639 * 109.81253 * 0.02562 * 4 3 2 6 6 C 1.50698 * 126.55129 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.50747 * 195.02547 * 6 5 4 8 8 C 1.53099 * 109.50447 * 74.93980 * 6 5 4 9 9 O 1.43023 * 109.25479 * 183.26271 * 8 6 5 10 10 C 1.43025 * 113.77742 * 58.59947 * 9 8 6 11 11 C 1.53097 * 109.25670 * 301.35392 * 10 9 8 12 12 N 1.47014 * 109.25746 * 56.85036 * 11 10 9 13 13 C 1.46898 * 111.00375 * 177.60774 * 12 11 10 14 14 C 1.53002 * 109.46880 * 313.63293 * 13 12 11 15 15 C 1.50693 * 109.47360 * 179.97438 * 14 13 12 16 16 O 1.21281 * 120.00225 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00379 * 180.02562 * 15 14 13 18 18 C 1.46503 * 119.99927 * 359.97438 * 17 15 14 19 19 C 1.46499 * 120.00275 * 180.02562 * 17 15 14 20 20 C 1.50695 * 109.47671 * 89.99529 * 19 17 15 21 21 H 1.08004 * 119.99653 * 359.97438 * 20 19 17 22 22 C 1.37877 * 120.00202 * 180.02562 * 20 19 17 23 23 N 1.31514 * 119.99900 * 180.02562 * 22 20 19 24 24 Si 1.86794 * 119.99877 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47206 * 90.00268 * 24 22 20 26 26 H 1.48502 * 109.46992 * 209.99924 * 24 22 20 27 27 H 1.48496 * 109.47547 * 330.00055 * 24 22 20 28 28 N 1.31128 * 106.89861 * 359.97438 * 5 4 3 29 29 H 1.09004 * 109.46802 * 269.69218 * 1 2 3 30 30 H 1.09001 * 109.46962 * 29.68458 * 1 2 3 31 31 H 1.08992 * 109.47269 * 149.69070 * 1 2 3 32 32 H 1.08996 * 109.50702 * 303.14594 * 8 6 5 33 33 H 1.08994 * 109.51030 * 63.28224 * 8 6 5 34 34 H 1.08992 * 109.50424 * 181.42038 * 10 9 8 35 35 H 1.08997 * 109.50203 * 61.28606 * 10 9 8 36 36 H 1.09001 * 109.50603 * 296.91558 * 11 10 9 37 37 H 1.09000 * 109.50345 * 176.78000 * 11 10 9 38 38 H 1.08997 * 109.47117 * 73.62992 * 13 12 11 39 39 H 1.08993 * 109.47460 * 193.63127 * 13 12 11 40 40 H 1.09005 * 109.47236 * 299.99945 * 14 13 12 41 41 H 1.09003 * 109.47150 * 59.99765 * 14 13 12 42 42 H 1.09000 * 109.47262 * 90.00256 * 18 17 15 43 43 H 1.08999 * 109.47262 * 210.00722 * 18 17 15 44 44 H 1.09007 * 109.46858 * 330.00318 * 18 17 15 45 45 H 1.09001 * 109.46939 * 209.99434 * 19 17 15 46 46 H 1.08999 * 109.47124 * 329.98917 * 19 17 15 47 47 H 0.96997 * 119.99817 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0053 5 6 3.5299 -0.6211 -0.0098 6 6 4.7969 -1.4369 -0.0175 7 1 4.5647 -2.4674 -0.2861 8 6 5.4353 -1.4027 1.3736 9 8 6.6754 -2.1145 1.3411 10 6 7.6153 -1.5927 0.3977 11 6 6.9983 -1.6298 -1.0029 12 7 5.7373 -0.8741 -0.9975 13 6 5.1399 -0.8370 -2.3390 14 6 6.2167 -0.4848 -3.3672 15 6 5.6041 -0.4473 -4.7435 16 8 4.4226 -0.6799 -4.8879 17 7 6.3694 -0.1564 -5.8141 18 6 7.7967 0.1240 -5.6398 19 6 5.7737 -0.1194 -7.1520 20 6 5.2787 1.2738 -7.4433 21 1 5.3958 2.0537 -6.7054 22 6 4.6755 1.5526 -8.6514 23 7 4.2441 2.7687 -8.9057 24 14 4.4725 0.2035 -9.9273 25 1 3.1723 -0.4831 -9.7191 26 1 4.5054 0.7993 -11.2871 27 1 5.5782 -0.7781 -9.7901 28 7 2.3030 -1.0840 -0.0063 29 1 -0.3633 -0.0055 1.0277 30 1 -0.3633 0.8928 -0.5089 31 1 -0.3633 -0.8871 -0.5186 32 1 5.6178 -0.3684 1.6650 33 1 4.7646 -1.8714 2.0936 34 1 8.5208 -2.1992 0.4127 35 1 7.8610 -0.5637 0.6601 36 1 6.8018 -2.6637 -1.2868 37 1 7.6888 -1.1805 -1.7167 38 1 4.7171 -1.8134 -2.5756 39 1 4.3523 -0.0840 -2.3653 40 1 6.6396 0.4916 -3.1306 41 1 7.0044 -1.2379 -3.3409 42 1 8.3616 -0.8050 -5.7173 43 1 8.1281 0.8164 -6.4137 44 1 7.9623 0.5693 -4.6587 45 1 6.5235 -0.4006 -7.8915 46 1 4.9387 -0.8186 -7.1974 47 1 3.8194 2.9647 -9.7555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161229577.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:38 Heat of formation + Delta-G solvation = -20.005001 kcal Electronic energy + Delta-G solvation = -30240.830206 eV Core-core repulsion = 26040.771601 eV Total energy + Delta-G solvation = -4200.058605 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.76249 -41.23032 -40.46849 -37.44020 -37.20126 -36.64445 -34.95668 -34.68954 -32.54118 -31.88078 -30.44292 -30.11072 -28.28431 -27.28752 -26.19098 -24.95639 -24.62548 -23.36368 -22.86571 -21.15682 -19.99936 -19.32979 -19.18656 -18.80775 -18.09472 -17.34499 -17.27327 -17.04262 -16.99226 -16.67629 -16.24970 -15.96772 -15.74061 -15.09077 -15.06095 -14.68753 -14.59289 -14.52055 -14.19693 -14.07844 -13.71807 -13.66361 -13.63290 -13.47130 -13.32225 -13.17985 -12.90834 -12.70998 -12.51957 -12.48927 -12.40176 -12.23071 -12.08772 -12.03400 -11.78040 -11.64030 -11.17746 -10.86945 -10.74473 -10.69200 -9.69205 -9.42443 -8.37468 -6.43111 -0.05069 1.02647 1.29570 1.34059 1.42520 1.59737 1.73641 2.04430 2.27892 2.36577 2.66395 2.89068 2.96993 3.05993 3.47418 3.59453 3.71301 3.83656 3.85503 3.93293 4.05483 4.27496 4.30745 4.35059 4.41340 4.45729 4.50840 4.53840 4.63244 4.65945 4.66851 4.72678 4.76341 4.79367 4.85112 4.89541 4.95314 5.00134 5.00858 5.02695 5.42778 5.51662 5.58394 5.68740 6.05836 6.19812 6.58512 6.66144 7.01201 7.17637 7.37363 8.79707 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.003176 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.721587 B = 8813.429544 C =10647.856610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.161 3.839 3 N -0.410 5.410 4 O 0.083 5.917 5 C 0.195 3.805 6 C 0.145 3.855 7 H 0.100 0.900 8 C 0.082 3.918 9 O -0.383 6.383 10 C 0.057 3.943 11 C 0.006 3.994 12 N -0.529 5.529 13 C 0.081 3.919 14 C -0.121 4.121 15 C 0.494 3.506 16 O -0.603 6.603 17 N -0.606 5.606 18 C 0.074 3.926 19 C 0.223 3.777 20 C -0.539 4.539 21 H 0.026 0.974 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.950 3.050 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.235 1.235 28 N -0.495 5.495 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.124 0.876 38 H 0.035 0.965 39 H 0.041 0.959 40 H 0.119 0.881 41 H 0.138 0.862 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.513 -12.238 22.688 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 N -0.120 5.120 4 O 0.026 5.974 5 C -0.026 4.026 6 C 0.034 3.966 7 H 0.117 0.883 8 C 0.004 3.996 9 O -0.301 6.301 10 C -0.019 4.019 11 C -0.120 4.120 12 N -0.256 5.256 13 C -0.047 4.047 14 C -0.160 4.160 15 C 0.283 3.717 16 O -0.485 6.485 17 N -0.337 5.337 18 C -0.067 4.067 19 C 0.100 3.900 20 C -0.578 4.578 21 H 0.044 0.956 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.772 3.228 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.158 1.158 28 N -0.230 5.230 29 H 0.132 0.868 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.093 0.907 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.142 0.858 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.112 0.888 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.396 -11.411 22.731 26.488 hybrid contribution -1.047 -0.251 -1.604 1.932 sum 6.349 -11.662 21.127 24.953 Atomic orbital electron populations 1.20368 0.80331 1.05508 1.05927 1.26656 1.02238 0.82909 0.99350 1.74663 0.89912 1.24914 1.22496 1.85302 1.21938 1.24910 1.65200 1.28711 0.96638 0.82159 0.95103 1.20987 0.83756 0.94036 0.97843 0.88287 1.22644 0.86294 0.99124 0.91537 1.88054 1.24659 1.56752 1.60638 1.23027 0.92053 1.01397 0.85420 1.23240 0.90380 0.97451 1.00933 1.62347 1.04837 1.53521 1.04849 1.21639 0.96144 0.99831 0.87133 1.21734 0.99394 1.06753 0.88158 1.21353 0.86224 0.76218 0.87920 1.90653 1.18450 1.52314 1.87074 1.47976 1.11184 1.67462 1.07092 1.22046 0.78458 1.02354 1.03883 1.19325 0.94222 0.94924 0.81503 1.21588 1.39285 0.95565 1.01330 0.95562 1.25899 0.94121 0.98156 1.00714 1.70057 1.41172 1.22118 1.25264 0.85688 0.79917 0.79320 0.77845 1.20457 1.19833 1.15764 1.71883 0.99985 1.30056 1.21073 0.86819 0.88963 0.88165 0.90700 0.86321 0.85048 0.90926 0.92564 0.85763 0.94648 0.94054 0.86263 0.84469 0.89605 0.91803 0.88760 0.92878 0.96633 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.17 10.51 71.24 0.75 -0.42 16 2 C 0.16 4.45 8.22 138.46 1.14 5.59 16 3 N -0.41 -12.79 12.16 -60.31 -0.73 -13.53 16 4 O 0.08 2.46 11.19 74.87 0.84 3.30 16 5 C 0.20 5.05 5.93 88.38 0.52 5.58 16 6 C 0.14 2.82 2.49 44.18 0.11 2.93 16 7 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.08 1.20 6.28 72.02 0.45 1.65 16 9 O -0.38 -5.47 10.82 -148.98 -1.61 -7.08 16 10 C 0.06 0.54 7.01 72.01 0.50 1.05 16 11 C 0.01 0.07 4.94 86.31 0.43 0.50 16 12 N -0.53 -10.25 4.68 -874.40 -4.09 -14.34 16 13 C 0.08 2.20 4.02 86.30 0.35 2.54 16 14 C -0.12 -2.99 3.52 29.85 0.11 -2.88 16 15 C 0.49 19.49 7.67 87.66 0.67 20.16 16 16 O -0.60 -30.79 15.56 -3.03 -0.05 -30.84 16 17 N -0.61 -23.83 2.86 -851.14 -2.43 -26.26 16 18 C 0.07 1.90 10.24 127.77 1.31 3.21 16 19 C 0.22 10.86 4.23 85.63 0.36 11.22 16 20 C -0.54 -32.22 9.94 25.60 0.25 -31.96 16 21 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 22 C 0.01 0.54 5.47 84.65 0.46 1.00 16 23 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 24 Si 0.95 44.87 27.47 68.60 1.88 46.75 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 26 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.23 -9.81 6.54 99.48 0.65 -9.16 16 28 N -0.49 -13.90 11.55 -303.20 -3.50 -17.40 16 29 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 0.96 6.05 -2.39 -0.01 0.95 16 38 H 0.04 1.06 8.03 -2.39 -0.02 1.04 16 39 H 0.04 1.47 7.28 -2.39 -0.02 1.45 16 40 H 0.12 2.60 7.40 -2.38 -0.02 2.58 16 41 H 0.14 2.14 6.24 -2.39 -0.01 2.12 16 42 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.06 1.82 8.07 -2.39 -0.02 1.80 16 44 H 0.09 1.79 6.44 -2.38 -0.02 1.78 16 45 H 0.05 2.34 7.13 -2.39 -0.02 2.32 16 46 H 0.02 0.82 6.85 -2.39 -0.02 0.81 16 47 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -87.72 382.75 -1.06 -88.77 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.92 Total: 10.93 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 7.42 Total: 20.18 kcal Atomic # 7 Polarization: -121.55 SS G_CDS: -10.46 Total: -132.00 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.82 Total: -34.62 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.75 kcal Total: -87.72 -1.06 -88.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161229577.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.767 kcal (2) G-P(sol) polarization free energy of solvation -87.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds