Wall clock time and date at job start Tue Mar 31 2020 21:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29949 * 126.28453 * 2 1 4 4 O 1.21299 * 110.25021 * 179.97438 * 3 2 1 5 5 C 1.33636 * 109.81194 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.54996 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.54000 * 165.13563 * 6 5 4 8 8 C 1.53099 * 109.50976 * 285.24165 * 6 5 4 9 9 O 1.43016 * 109.26081 * 176.78453 * 8 6 5 10 10 C 1.43013 * 113.73859 * 301.33273 * 9 8 6 11 11 C 1.53101 * 109.26012 * 58.66845 * 10 9 8 12 12 N 1.47013 * 109.50693 * 45.02582 * 6 5 4 13 13 C 1.46896 * 111.00094 * 57.67150 * 12 6 5 14 14 C 1.52996 * 109.47255 * 189.68005 * 13 12 6 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.46506 * 120.00264 * 0.28128 * 17 15 14 19 19 C 1.46499 * 120.00199 * 180.27479 * 17 15 14 20 20 C 1.50697 * 109.46949 * 90.00203 * 19 17 15 21 21 H 1.08004 * 120.00186 * 0.02562 * 20 19 17 22 22 C 1.37881 * 120.00081 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46956 * 89.99765 * 24 22 20 26 26 H 1.48497 * 109.47226 * 210.00189 * 24 22 20 27 27 H 1.48501 * 109.47027 * 329.99834 * 24 22 20 28 28 N 1.31131 * 106.89765 * 0.22597 * 5 4 3 29 29 H 1.09000 * 109.46911 * 89.98435 * 1 2 3 30 30 H 1.09002 * 109.47059 * 209.97948 * 1 2 3 31 31 H 1.08999 * 109.47368 * 329.98316 * 1 2 3 32 32 H 1.08998 * 109.50276 * 56.84586 * 8 6 5 33 33 H 1.09002 * 109.53738 * 296.74167 * 8 6 5 34 34 H 1.09005 * 109.50686 * 298.73750 * 10 9 8 35 35 H 1.08997 * 109.50775 * 178.60535 * 10 9 8 36 36 H 1.08999 * 109.50876 * 183.21949 * 11 10 9 37 37 H 1.09001 * 109.54198 * 63.10891 * 11 10 9 38 38 H 1.09004 * 109.47112 * 69.67997 * 13 12 6 39 39 H 1.09000 * 109.47386 * 309.68385 * 13 12 6 40 40 H 1.09004 * 109.47066 * 59.99965 * 14 13 12 41 41 H 1.08994 * 109.47405 * 299.99795 * 14 13 12 42 42 H 1.08998 * 109.46921 * 89.99095 * 18 17 15 43 43 H 1.08994 * 109.46996 * 209.99677 * 18 17 15 44 44 H 1.09001 * 109.46578 * 329.99540 * 18 17 15 45 45 H 1.09001 * 109.47567 * 210.00057 * 19 17 15 46 46 H 1.09005 * 109.47076 * 330.00563 * 19 17 15 47 47 H 0.96991 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 1 4.5662 -2.4688 0.2661 8 6 5.4320 -1.3955 -1.3907 9 8 6.6716 -2.1084 -1.3652 10 6 7.6141 -1.5907 -0.4224 11 6 7.0013 -1.6340 0.9800 12 7 5.7402 -0.8782 0.9815 13 6 5.1468 -0.8471 2.3249 14 6 6.0518 -0.0468 3.2638 15 6 5.4427 -0.0144 4.6418 16 8 4.3888 -0.5764 4.8525 17 7 6.0722 0.6341 5.6417 18 6 7.3456 1.3126 5.3875 19 6 5.4832 0.6606 6.9828 20 6 5.9819 -0.5212 7.7738 21 1 6.6692 -1.2217 7.3229 22 6 5.5607 -0.7081 9.0734 23 7 4.7233 0.1446 9.6224 24 14 6.1793 -2.1726 10.0542 25 1 7.4227 -1.7967 10.7738 26 1 5.1440 -2.5837 11.0362 27 1 6.4630 -3.3016 9.1322 28 7 2.3030 -1.0840 -0.0035 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6136 -0.3597 -1.6774 33 1 4.7596 -1.8603 -2.1119 34 1 7.8592 -0.5605 -0.6808 35 1 8.5197 -2.1970 -0.4427 36 1 7.6937 -1.1878 1.6938 37 1 6.8058 -2.6689 1.2607 38 1 5.0435 -1.8653 2.7002 39 1 4.1650 -0.3760 2.2777 40 1 6.1551 0.9713 2.8885 41 1 7.0335 -0.5179 3.3111 42 1 7.1545 2.3421 5.0847 43 1 7.9481 1.3067 6.2957 44 1 7.8813 0.7936 4.5926 45 1 5.7703 1.5830 7.4876 46 1 4.3971 0.6126 6.9036 47 1 4.4273 0.0132 10.5367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161229698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:43 Heat of formation + Delta-G solvation = 4.034471 kcal Electronic energy + Delta-G solvation = -30202.130444 eV Core-core repulsion = 26003.114269 eV Total energy + Delta-G solvation = -4199.016176 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.76068 -40.25463 -38.97158 -36.53989 -36.20669 -34.84390 -33.91200 -32.66961 -31.35833 -31.13879 -29.26611 -28.20772 -27.06741 -25.70889 -25.40053 -23.66657 -23.53013 -22.34642 -21.76148 -20.36734 -18.54599 -18.25674 -17.77176 -16.90100 -16.60791 -16.54817 -16.18025 -15.87918 -15.66981 -15.50600 -15.03802 -14.77781 -14.24536 -14.22306 -13.88888 -13.79682 -13.53597 -13.40894 -12.89547 -12.62967 -12.48653 -12.43621 -12.28753 -12.12161 -11.95497 -11.83152 -11.64447 -11.62912 -11.24952 -11.19707 -11.13474 -10.92236 -10.81305 -10.58091 -10.35219 -10.18212 -9.89721 -9.65371 -8.96335 -8.85018 -8.45803 -7.67310 -6.06386 -4.11450 0.92856 2.00964 2.50583 2.99284 3.27855 3.33084 3.34769 3.37116 3.41911 3.61738 3.88358 4.05837 4.24440 4.42937 4.53124 4.54171 4.66522 4.82768 4.87920 5.06000 5.09559 5.14431 5.19116 5.19680 5.21429 5.28360 5.29021 5.34936 5.43810 5.52411 5.55994 5.68158 5.74925 5.78666 5.83711 5.88754 5.96244 6.18689 6.43716 6.52120 6.64867 7.02901 7.42106 7.51087 7.89675 8.00485 8.20985 8.38314 8.87268 9.05533 9.53637 11.01751 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002982 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.763949 B = 9388.164347 C =10706.993339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.383 5.383 4 O 0.097 5.903 5 C 0.192 3.808 6 C 0.143 3.857 7 H 0.099 0.901 8 C 0.075 3.925 9 O -0.374 6.374 10 C 0.059 3.941 11 C 0.015 3.985 12 N -0.532 5.532 13 C 0.070 3.930 14 C -0.134 4.134 15 C 0.504 3.496 16 O -0.545 6.545 17 N -0.602 5.602 18 C 0.084 3.916 19 C 0.245 3.755 20 C -0.527 4.527 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.895 5.895 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.274 1.274 28 N -0.475 5.475 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.043 0.957 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.271 -0.325 -24.081 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.090 5.090 4 O 0.037 5.963 5 C -0.029 4.029 6 C 0.032 3.968 7 H 0.117 0.883 8 C -0.003 4.003 9 O -0.292 6.292 10 C -0.018 4.018 11 C -0.113 4.113 12 N -0.258 5.258 13 C -0.057 4.057 14 C -0.174 4.174 15 C 0.290 3.710 16 O -0.423 6.423 17 N -0.334 5.334 18 C -0.060 4.060 19 C 0.126 3.874 20 C -0.565 4.565 21 H 0.075 0.925 22 C -0.142 4.142 23 N -0.533 5.533 24 Si 0.726 3.274 25 H -0.206 1.206 26 H -0.211 1.211 27 H -0.199 1.199 28 N -0.210 5.210 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.085 0.915 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.050 0.950 46 H 0.061 0.939 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.105 0.270 -24.030 24.123 hybrid contribution 0.276 -1.311 1.328 1.886 sum 2.381 -1.041 -22.702 22.850 Atomic orbital electron populations 1.20152 0.82804 1.05002 1.04138 1.25903 1.00662 0.83320 1.00636 1.74669 0.89492 1.23910 1.20885 1.85345 1.21984 1.24240 1.64727 1.28139 0.95908 0.82426 0.96471 1.20775 0.84489 0.94945 0.96575 0.88300 1.22652 0.86132 0.98615 0.92948 1.88057 1.24485 1.56623 1.59993 1.22816 0.91810 1.00388 0.86765 1.22957 0.91586 0.97539 0.99208 1.62279 1.04029 1.52635 1.06894 1.21900 0.97756 1.00435 0.85607 1.21621 0.99883 1.02654 0.93253 1.20225 0.85418 0.79495 0.85886 1.90680 1.23196 1.44737 1.83712 1.48151 1.21865 1.51567 1.11803 1.21644 0.86472 0.96023 1.01905 1.19289 0.95274 0.97107 0.75768 1.21421 1.27749 1.09998 0.97380 0.92509 1.24950 0.94962 0.96629 0.97618 1.69933 1.32566 1.36341 1.14503 0.86490 0.78408 0.82747 0.79737 1.20599 1.21051 1.19920 1.71886 0.99428 1.29643 1.20011 0.89367 0.88893 0.89339 0.91058 0.87505 0.91524 0.87696 0.88091 0.92830 0.92782 0.90563 0.88550 0.89226 0.93664 0.90771 0.92434 0.94995 0.93915 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.01 0.38 -0.18 16 2 C 0.17 2.17 8.22 -156.38 -1.28 0.88 16 3 N -0.38 -5.43 12.16 30.90 0.38 -5.06 16 4 O 0.10 1.31 11.25 18.12 0.20 1.52 16 5 C 0.19 2.38 5.59 -13.06 -0.07 2.31 16 6 C 0.14 1.47 2.53 -68.75 -0.17 1.29 16 7 H 0.10 1.04 8.14 -51.92 -0.42 0.61 16 8 C 0.07 0.61 6.27 37.21 0.23 0.85 16 9 O -0.37 -3.29 10.83 -35.23 -0.38 -3.67 16 10 C 0.06 0.41 7.01 37.21 0.26 0.67 16 11 C 0.01 0.12 5.43 -3.71 -0.02 0.10 16 12 N -0.53 -5.64 4.53 -227.72 -1.03 -6.67 16 13 C 0.07 0.99 4.06 -3.83 -0.02 0.97 16 14 C -0.13 -1.89 4.18 -27.88 -0.12 -2.01 16 15 C 0.50 10.39 7.67 -10.98 -0.08 10.30 16 16 O -0.55 -13.82 15.56 5.55 0.09 -13.74 16 17 N -0.60 -12.73 2.86 -182.95 -0.52 -13.25 16 18 C 0.08 1.29 10.25 59.85 0.61 1.90 16 19 C 0.24 6.47 5.16 -5.20 -0.03 6.44 16 20 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 21 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16 22 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 23 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 24 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 28 N -0.47 -6.40 11.55 -9.87 -0.11 -6.52 16 29 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.10 0.74 6.37 -51.93 -0.33 0.41 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.08 1.26 6.61 -51.93 -0.34 0.92 16 40 H 0.10 1.22 8.11 -51.93 -0.42 0.80 16 41 H 0.09 1.06 5.76 -51.93 -0.30 0.76 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 45 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 46 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 387.08 15.07 5.83 5.83 Total: -1.00 -35.85 387.08 -7.71 -43.56 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.14 Total: -2.69 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -0.73 Total: 9.85 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.56 Total: -57.53 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.09 Total: -15.89 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.85 -7.71 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161229698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.597 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds