Wall clock time and date at job start Tue Mar 31 2020 21:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29949 * 126.28453 * 2 1 4 4 O 1.21299 * 110.25021 * 179.97438 * 3 2 1 5 5 C 1.33636 * 109.81194 * 359.97438 * 4 3 2 6 6 C 1.50701 * 126.54996 * 179.97438 * 5 4 3 7 7 H 1.09009 * 109.54000 * 165.13563 * 6 5 4 8 8 C 1.53099 * 109.50976 * 285.24165 * 6 5 4 9 9 O 1.43016 * 109.26081 * 176.78453 * 8 6 5 10 10 C 1.43013 * 113.73859 * 301.33273 * 9 8 6 11 11 C 1.53101 * 109.26012 * 58.66845 * 10 9 8 12 12 N 1.47013 * 109.50693 * 45.02582 * 6 5 4 13 13 C 1.46896 * 111.00094 * 57.67150 * 12 6 5 14 14 C 1.52996 * 109.47255 * 189.68005 * 13 12 6 15 15 C 1.50702 * 109.47159 * 179.97438 * 14 13 12 16 16 O 1.21283 * 120.00262 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72352 * 15 14 13 18 18 C 1.46506 * 120.00264 * 0.28128 * 17 15 14 19 19 C 1.46499 * 120.00199 * 180.27479 * 17 15 14 20 20 C 1.50697 * 109.46949 * 90.00203 * 19 17 15 21 21 H 1.08004 * 120.00186 * 0.02562 * 20 19 17 22 22 C 1.37881 * 120.00081 * 180.02562 * 20 19 17 23 23 N 1.31519 * 120.00096 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46956 * 89.99765 * 24 22 20 26 26 H 1.48497 * 109.47226 * 210.00189 * 24 22 20 27 27 H 1.48501 * 109.47027 * 329.99834 * 24 22 20 28 28 N 1.31131 * 106.89765 * 0.22597 * 5 4 3 29 29 H 1.09000 * 109.46911 * 89.98435 * 1 2 3 30 30 H 1.09002 * 109.47059 * 209.97948 * 1 2 3 31 31 H 1.08999 * 109.47368 * 329.98316 * 1 2 3 32 32 H 1.08998 * 109.50276 * 56.84586 * 8 6 5 33 33 H 1.09002 * 109.53738 * 296.74167 * 8 6 5 34 34 H 1.09005 * 109.50686 * 298.73750 * 10 9 8 35 35 H 1.08997 * 109.50775 * 178.60535 * 10 9 8 36 36 H 1.08999 * 109.50876 * 183.21949 * 11 10 9 37 37 H 1.09001 * 109.54198 * 63.10891 * 11 10 9 38 38 H 1.09004 * 109.47112 * 69.67997 * 13 12 6 39 39 H 1.09000 * 109.47386 * 309.68385 * 13 12 6 40 40 H 1.09004 * 109.47066 * 59.99965 * 14 13 12 41 41 H 1.08994 * 109.47405 * 299.99795 * 14 13 12 42 42 H 1.08998 * 109.46921 * 89.99095 * 18 17 15 43 43 H 1.08994 * 109.46996 * 209.99677 * 18 17 15 44 44 H 1.09001 * 109.46578 * 329.99540 * 18 17 15 45 45 H 1.09001 * 109.47567 * 210.00057 * 19 17 15 46 46 H 1.09005 * 109.47076 * 330.00563 * 19 17 15 47 47 H 0.96991 * 119.99957 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7125 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 1 4.5662 -2.4688 0.2661 8 6 5.4320 -1.3955 -1.3907 9 8 6.6716 -2.1084 -1.3652 10 6 7.6141 -1.5907 -0.4224 11 6 7.0013 -1.6340 0.9800 12 7 5.7402 -0.8782 0.9815 13 6 5.1468 -0.8471 2.3249 14 6 6.0518 -0.0468 3.2638 15 6 5.4427 -0.0144 4.6418 16 8 4.3888 -0.5764 4.8525 17 7 6.0722 0.6341 5.6417 18 6 7.3456 1.3126 5.3875 19 6 5.4832 0.6606 6.9828 20 6 5.9819 -0.5212 7.7738 21 1 6.6692 -1.2217 7.3229 22 6 5.5607 -0.7081 9.0734 23 7 4.7233 0.1446 9.6224 24 14 6.1793 -2.1726 10.0542 25 1 7.4227 -1.7967 10.7738 26 1 5.1440 -2.5837 11.0362 27 1 6.4630 -3.3016 9.1322 28 7 2.3030 -1.0840 -0.0035 29 1 -0.3633 0.0003 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3634 0.8898 0.5141 32 1 5.6136 -0.3597 -1.6774 33 1 4.7596 -1.8603 -2.1119 34 1 7.8592 -0.5605 -0.6808 35 1 8.5197 -2.1970 -0.4427 36 1 7.6937 -1.1878 1.6938 37 1 6.8058 -2.6689 1.2607 38 1 5.0435 -1.8653 2.7002 39 1 4.1650 -0.3760 2.2777 40 1 6.1551 0.9713 2.8885 41 1 7.0335 -0.5179 3.3111 42 1 7.1545 2.3421 5.0847 43 1 7.9481 1.3067 6.2957 44 1 7.8813 0.7936 4.5926 45 1 5.7703 1.5830 7.4876 46 1 4.3971 0.6126 6.9036 47 1 4.4273 0.0132 10.5367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161229698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:42 Heat of formation + Delta-G solvation = -24.814441 kcal Electronic energy + Delta-G solvation = -30203.381427 eV Core-core repulsion = 26003.114269 eV Total energy + Delta-G solvation = -4200.267158 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.75471 -41.16020 -40.44698 -37.41540 -37.17962 -36.59742 -34.90693 -34.68885 -32.51382 -31.91207 -30.10948 -29.91198 -28.19172 -27.23269 -26.18258 -25.22922 -24.60694 -23.30897 -23.02197 -21.18966 -20.01301 -19.34168 -18.78918 -18.71427 -18.02761 -17.35181 -17.28327 -17.06706 -16.90611 -16.59800 -16.31604 -16.04684 -15.66355 -15.11875 -14.96948 -14.78439 -14.52489 -14.26396 -14.23167 -13.87642 -13.74402 -13.60061 -13.47892 -13.43573 -13.31715 -13.13616 -12.85514 -12.81870 -12.55280 -12.50097 -12.41945 -12.23282 -12.22241 -12.03134 -11.73580 -11.63327 -11.16066 -10.72558 -10.66996 -10.65605 -9.73594 -9.45041 -8.24999 -6.40472 -0.04758 1.03727 1.34707 1.38088 1.48178 1.58595 1.79048 2.03526 2.32747 2.43634 2.69172 2.89272 3.04451 3.06469 3.48146 3.62663 3.71819 3.83340 3.88723 3.95249 4.07315 4.29074 4.31417 4.34210 4.41327 4.51945 4.52749 4.54851 4.63027 4.66551 4.69962 4.76127 4.77609 4.81243 4.91265 4.96390 5.00781 5.01214 5.01710 5.19666 5.51341 5.53209 5.66237 5.81035 6.02764 6.05691 6.66561 6.75675 7.02044 7.25209 7.44178 8.82305 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011833 B = 0.002982 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2365.763949 B = 9388.164347 C =10706.993339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.161 3.839 3 N -0.407 5.407 4 O 0.087 5.913 5 C 0.197 3.803 6 C 0.143 3.857 7 H 0.094 0.906 8 C 0.083 3.917 9 O -0.384 6.384 10 C 0.060 3.940 11 C 0.010 3.990 12 N -0.523 5.523 13 C 0.081 3.919 14 C -0.114 4.114 15 C 0.492 3.508 16 O -0.606 6.606 17 N -0.610 5.610 18 C 0.077 3.923 19 C 0.258 3.742 20 C -0.543 4.543 21 H 0.056 0.944 22 C 0.005 3.995 23 N -0.930 5.930 24 Si 0.970 3.030 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.272 1.272 28 N -0.498 5.498 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.044 0.956 40 H 0.123 0.877 41 H 0.126 0.874 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.101 0.899 45 H 0.023 0.977 46 H -0.008 1.008 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.922 -0.919 -25.625 26.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.112 4.112 3 N -0.116 5.116 4 O 0.030 5.970 5 C -0.024 4.024 6 C 0.032 3.968 7 H 0.112 0.888 8 C 0.004 3.996 9 O -0.302 6.302 10 C -0.017 4.017 11 C -0.117 4.117 12 N -0.250 5.250 13 C -0.047 4.047 14 C -0.153 4.153 15 C 0.281 3.719 16 O -0.488 6.488 17 N -0.340 5.340 18 C -0.065 4.065 19 C 0.137 3.863 20 C -0.581 4.581 21 H 0.074 0.926 22 C -0.194 4.194 23 N -0.570 5.570 24 Si 0.794 3.206 25 H -0.186 1.186 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.233 5.233 29 H 0.131 0.869 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.137 0.863 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.141 0.859 41 H 0.144 0.856 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.041 0.959 46 H 0.010 0.990 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.832 -0.301 -25.608 26.062 hybrid contribution -0.567 -1.106 1.790 2.179 sum 4.266 -1.407 -23.817 24.237 Atomic orbital electron populations 1.20365 0.80378 1.05521 1.05887 1.26639 1.02218 0.82892 0.99420 1.74643 0.89856 1.24703 1.22439 1.85297 1.21918 1.24661 1.65153 1.28589 0.96460 0.82245 0.95121 1.20962 0.83863 0.94085 0.97871 0.88803 1.22661 0.86220 0.99273 0.91429 1.88057 1.24648 1.57086 1.60426 1.22995 0.91886 1.01625 0.85165 1.23162 0.90466 0.97080 1.00968 1.62298 1.04620 1.53345 1.04729 1.21628 0.96672 0.98827 0.87563 1.21546 1.00589 1.04590 0.88594 1.21376 0.84668 0.77929 0.87931 1.90648 1.25990 1.47172 1.84990 1.48193 1.23763 1.52131 1.09955 1.21981 0.83908 0.97447 1.03141 1.18742 0.92629 0.96236 0.78724 1.21705 1.27851 1.10557 0.98004 0.92595 1.25919 0.94986 0.99646 0.98845 1.70061 1.33656 1.38257 1.15022 0.85375 0.78424 0.78747 0.78027 1.18557 1.20777 1.19626 1.71902 1.00088 1.30199 1.21090 0.86904 0.88365 0.88739 0.90255 0.86393 0.90375 0.85389 0.86308 0.93381 0.94874 0.93758 0.85941 0.85587 0.91277 0.91519 0.88071 0.95904 0.98956 0.92396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.51 71.24 0.75 -0.35 16 2 C 0.16 4.22 8.22 138.46 1.14 5.36 16 3 N -0.41 -11.75 12.16 -60.33 -0.73 -12.48 16 4 O 0.09 2.37 11.25 74.90 0.84 3.21 16 5 C 0.20 4.92 5.59 88.38 0.49 5.41 16 6 C 0.14 2.81 2.53 44.18 0.11 2.93 16 7 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 8 C 0.08 1.19 6.27 72.02 0.45 1.64 16 9 O -0.38 -5.72 10.83 -148.98 -1.61 -7.33 16 10 C 0.06 0.61 7.01 72.02 0.50 1.12 16 11 C 0.01 0.14 5.43 86.31 0.47 0.60 16 12 N -0.52 -10.20 4.53 -874.37 -3.96 -14.16 16 13 C 0.08 2.25 4.06 86.30 0.35 2.60 16 14 C -0.11 -2.98 4.18 29.85 0.12 -2.85 16 15 C 0.49 20.43 7.67 87.66 0.67 21.10 16 16 O -0.61 -32.28 15.56 -3.04 -0.05 -32.32 16 17 N -0.61 -25.78 2.86 -851.12 -2.43 -28.21 16 18 C 0.08 2.18 10.25 127.77 1.31 3.48 16 19 C 0.26 14.20 5.16 85.63 0.44 14.64 16 20 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 21 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 22 C 0.00 0.28 5.46 84.66 0.46 0.74 16 23 N -0.93 -57.07 13.29 21.45 0.28 -56.79 16 24 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 28 N -0.50 -13.67 11.55 -303.21 -3.50 -17.17 16 29 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.12 1.21 6.37 -2.39 -0.02 1.19 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.03 1.04 8.08 -2.38 -0.02 1.02 16 39 H 0.04 1.51 6.61 -2.39 -0.02 1.50 16 40 H 0.12 2.67 8.11 -2.38 -0.02 2.65 16 41 H 0.13 2.42 5.76 -2.39 -0.01 2.41 16 42 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 44 H 0.10 1.97 6.43 -2.39 -0.02 1.95 16 45 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 46 H -0.01 -0.49 7.42 -2.38 -0.02 -0.51 16 47 H 0.27 15.34 8.31 -92.72 -0.77 14.57 16 Total: -1.00 -83.15 387.08 -0.64 -83.79 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.98 Total: 9.28 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 7.52 Total: 25.15 kcal Atomic # 7 Polarization: -118.47 SS G_CDS: -10.34 Total: -128.81 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -0.82 Total: -36.45 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -83.15 -0.64 -83.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161229698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.974 kcal (2) G-P(sol) polarization free energy of solvation -83.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds