Wall clock time and date at job start Tue Mar 31 2020 22:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46533 * 2 1 4 4 N 1.35028 * 126.38280 * 265.01789 * 3 2 1 5 5 H 0.97003 * 124.89220 * 0.02870 * 4 3 2 6 6 N 1.28475 * 110.22778 * 180.02562 * 4 3 2 7 7 C 1.31808 * 110.07165 * 0.02562 * 6 4 3 8 8 C 1.47713 * 126.51570 * 180.02562 * 7 6 4 9 9 O 1.21565 * 120.00068 * 185.81806 * 8 7 6 10 10 N 1.34779 * 119.99843 * 5.53602 * 8 7 6 11 11 C 1.46498 * 119.99855 * 175.66335 * 10 8 7 12 12 C 1.50699 * 109.46871 * 90.00458 * 11 10 8 13 13 H 1.08001 * 119.99920 * 0.02562 * 12 11 10 14 14 C 1.37883 * 120.00423 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99277 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46995 * 89.99990 * 16 14 12 18 18 H 1.48502 * 109.47201 * 210.00033 * 16 14 12 19 19 H 1.48504 * 109.47012 * 330.00119 * 16 14 12 20 20 C 1.46501 * 120.00122 * 355.67308 * 10 8 7 21 21 C 1.52996 * 109.47444 * 94.65260 * 20 10 8 22 22 C 1.52998 * 109.47467 * 59.99464 * 21 20 10 23 23 C 1.53000 * 109.47227 * 179.97438 * 21 20 10 24 24 C 1.53005 * 109.46832 * 299.99743 * 21 20 10 25 25 C 1.35364 * 126.38272 * 85.35443 * 3 2 1 26 26 N 1.48003 * 127.25516 * 359.97388 * 25 3 2 27 27 O 1.21799 * 120.00039 * 270.22140 * 26 25 3 28 28 O 1.21803 * 119.99874 * 90.21267 * 26 25 3 29 29 H 1.09001 * 109.46713 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47263 * 299.99790 * 1 2 3 31 31 H 1.09002 * 109.46951 * 60.00462 * 1 2 3 32 32 H 1.08997 * 109.47263 * 240.00210 * 2 1 3 33 33 H 1.09002 * 109.46951 * 119.99538 * 2 1 3 34 34 H 1.09000 * 109.47324 * 210.00438 * 11 10 8 35 35 H 1.09004 * 109.47200 * 330.00657 * 11 10 8 36 36 H 0.97003 * 119.99128 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.46528 * 214.65054 * 20 10 8 38 38 H 1.09002 * 109.47151 * 334.64622 * 20 10 8 39 39 H 1.09004 * 109.46977 * 59.99918 * 22 21 20 40 40 H 1.09001 * 109.47668 * 180.02562 * 22 21 20 41 41 H 1.09003 * 109.47219 * 300.00163 * 22 21 20 42 42 H 1.08995 * 109.47146 * 59.99911 * 23 21 20 43 43 H 1.09001 * 109.46952 * 179.97438 * 23 21 20 44 44 H 1.09000 * 109.46652 * 299.99285 * 23 21 20 45 45 H 1.09004 * 109.47298 * 51.51798 * 24 21 20 46 46 H 1.09000 * 109.47237 * 171.51722 * 24 21 20 47 47 H 1.09000 * 109.47078 * 291.51728 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3882 2.1447 -1.0830 5 1 2.3592 1.8246 -1.9982 6 7 2.7706 3.3183 -0.7268 7 6 2.6938 3.4409 0.5833 8 6 3.0436 4.6372 1.3761 9 8 3.0283 4.5873 2.5907 10 7 3.3854 5.7823 0.7530 11 6 3.6399 6.9943 1.5356 12 6 5.0994 7.0559 1.9059 13 1 5.7703 6.2710 1.5894 14 6 5.5783 8.1143 2.6486 15 7 4.7610 9.0699 3.0343 16 14 7.3872 8.1903 3.1081 17 1 8.1364 8.9156 2.0509 18 1 7.5399 8.9041 4.4013 19 1 7.9234 6.8115 3.2374 20 6 3.5021 5.8152 -0.7070 21 6 2.1832 6.2982 -1.3134 22 6 1.8676 7.7028 -0.7953 23 6 2.3054 6.3331 -2.8381 24 6 1.0576 5.3422 -0.9132 25 6 2.2166 2.2074 1.0862 26 7 1.9687 1.8528 2.5016 27 8 0.8744 2.0539 2.9971 28 8 2.8590 1.3598 3.1708 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3780 7.8710 0.9433 35 1 3.0355 6.9748 2.4426 36 1 5.0979 9.8143 3.5571 37 1 4.3041 6.4962 -0.9920 38 1 3.7269 4.8145 -1.0761 39 1 2.6696 8.3838 -1.0803 40 1 0.9277 8.0467 -1.2270 41 1 1.7807 7.6783 0.2910 42 1 2.5303 5.3326 -3.2076 43 1 1.3655 6.6768 -3.2702 44 1 3.1071 7.0144 -3.1228 45 1 1.0678 5.2010 0.1676 46 1 0.0987 5.7632 -1.2155 47 1 1.2043 4.3814 -1.4066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188425726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:27 Heat of formation + Delta-G solvation = 47.671541 kcal Electronic energy + Delta-G solvation = -31870.004396 eV Core-core repulsion = 27672.880466 eV Total energy + Delta-G solvation = -4197.123930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.61523 -41.54158 -39.42021 -37.13388 -36.20057 -35.02760 -33.97921 -32.80849 -32.29836 -30.50201 -27.98842 -27.14047 -26.81500 -26.58968 -25.76517 -24.39636 -24.07406 -22.10193 -21.48469 -19.30873 -19.15918 -18.53264 -18.29301 -17.61193 -16.79655 -16.75539 -16.34219 -16.26972 -15.50017 -14.89486 -14.76135 -14.40252 -14.25127 -13.98231 -13.75664 -13.49775 -13.04138 -12.75691 -12.55428 -12.32708 -12.20072 -11.97978 -11.87085 -11.64000 -11.41234 -11.38789 -11.31695 -11.12306 -10.99868 -10.94075 -10.81954 -10.81263 -10.55824 -10.33209 -10.18350 -10.02376 -9.96270 -9.61211 -9.56808 -9.42665 -8.41266 -7.73370 -6.04061 -4.08289 0.78451 1.04427 1.31889 1.36779 2.37104 3.31693 3.38770 3.40189 3.46759 3.61528 3.89254 4.04602 4.21483 4.46199 4.57692 4.70371 4.75183 4.92986 5.06069 5.06683 5.22285 5.27519 5.29557 5.35697 5.37295 5.68144 5.71661 5.77181 5.79144 5.94610 5.98988 6.11839 6.17550 6.21448 6.23794 6.42388 6.47563 6.53397 6.59246 6.74877 7.00780 7.24558 7.35788 7.45674 7.86581 7.91126 8.20466 8.23616 8.72477 8.96348 9.56118 11.04029 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.004526 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.682271 B = 6185.478044 C = 7651.066810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.069 4.069 3 C 0.091 3.909 4 N -0.374 5.374 5 H 0.456 0.544 6 N -0.222 5.222 7 C 0.068 3.932 8 C 0.573 3.427 9 O -0.518 6.518 10 N -0.565 5.565 11 C 0.239 3.761 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.102 3.898 21 C -0.078 4.078 22 C -0.147 4.147 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.106 4.106 26 N 0.062 4.938 27 O -0.133 6.133 28 O -0.128 6.128 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.052 0.948 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.046 0.954 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.864 -15.887 -15.735 24.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.108 4.108 3 C -0.040 4.040 4 N -0.087 5.087 5 H 0.303 0.697 6 N -0.056 5.056 7 C -0.095 4.095 8 C 0.356 3.644 9 O -0.392 6.392 10 N -0.295 5.295 11 C 0.121 3.879 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.139 4.139 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.022 4.022 21 C -0.079 4.079 22 C -0.204 4.204 23 C -0.190 4.190 24 C -0.196 4.196 25 C -0.199 4.199 26 N 0.595 4.405 27 O -0.356 6.356 28 O -0.352 6.352 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.423 -14.881 -16.651 23.867 hybrid contribution 0.788 -0.420 0.698 1.133 sum -7.636 -15.301 -15.953 23.386 Atomic orbital electron populations 1.21832 0.92523 1.03306 1.03480 1.20438 0.97714 0.87228 1.05385 1.20825 1.01033 0.96394 0.85725 1.43402 1.46852 1.08886 1.09547 0.69728 1.74187 1.17898 1.00571 1.12907 1.22453 1.02814 0.95015 0.89262 1.16856 0.79713 0.81457 0.86398 1.90883 1.53457 1.82655 1.12235 1.48065 1.63756 1.10600 1.07055 1.19639 0.97026 0.79739 0.91472 1.21400 0.93682 1.07243 1.34283 0.92443 1.24902 0.98125 0.95434 0.95438 1.69928 1.34840 1.10999 1.37457 0.86496 0.84849 0.78213 0.77902 1.20676 1.21019 1.19836 1.22100 0.96506 1.03503 0.80101 1.20844 0.95890 0.96084 0.95079 1.22084 1.00550 0.95146 1.02652 1.21749 1.01415 1.01298 0.94537 1.22128 0.97433 0.98845 1.01150 1.20462 1.18616 0.97339 0.83455 1.42069 1.00036 0.97721 1.00674 1.94538 1.11431 1.56270 1.73362 1.94563 1.38446 1.42685 1.59554 0.90736 0.91266 0.91975 0.88788 0.88609 0.93068 0.93914 0.92676 0.90096 0.88165 0.92307 0.93680 0.91067 0.92984 0.93003 0.92538 0.93086 0.93525 0.92625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.16 0.37 -0.58 16 2 C -0.07 -0.45 6.49 -27.88 -0.18 -0.63 16 3 C 0.09 0.94 6.48 -82.21 -0.53 0.40 16 4 N -0.37 -3.20 6.76 33.50 0.23 -2.98 16 5 H 0.46 1.68 8.96 -190.43 -1.71 -0.03 16 6 N -0.22 -2.86 5.70 33.42 0.19 -2.67 16 7 C 0.07 1.18 5.35 -82.76 -0.44 0.74 16 8 C 0.57 12.87 6.38 -12.39 -0.08 12.79 16 9 O -0.52 -13.97 16.11 5.31 0.09 -13.89 16 10 N -0.57 -12.23 1.98 -176.22 -0.35 -12.58 16 11 C 0.24 6.21 4.04 -5.20 -0.02 6.19 16 12 C -0.53 -15.05 9.39 -34.44 -0.32 -15.38 16 13 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 16 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 20 C 0.10 1.74 4.48 -4.04 -0.02 1.72 16 21 C -0.08 -1.12 0.84 -154.51 -0.13 -1.25 16 22 C -0.15 -2.35 7.13 37.16 0.26 -2.08 16 23 C -0.13 -1.48 8.47 37.16 0.31 -1.16 16 24 C -0.14 -1.95 6.95 37.16 0.26 -1.69 16 25 C -0.11 -1.68 6.75 -79.74 -0.54 -2.22 16 26 N 0.06 1.14 3.95 34.07 0.13 1.27 16 27 O -0.13 -2.49 19.25 -29.46 -0.57 -3.06 16 28 O -0.13 -2.48 19.25 -29.46 -0.57 -3.05 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 1.30 5.48 -51.93 -0.28 1.02 16 35 H 0.04 1.26 7.49 -51.93 -0.39 0.88 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 38 H 0.10 1.54 4.75 -52.13 -0.25 1.29 16 39 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.07 1.35 5.65 -51.93 -0.29 1.06 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.88 5.51 -51.93 -0.29 0.59 16 46 H 0.05 0.60 8.13 -51.93 -0.42 0.18 16 47 H 0.06 0.68 5.75 -51.93 -0.30 0.38 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -35.88 382.53 -8.64 -44.52 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -8.12 Total: -3.29 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.16 Total: -1.42 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.94 Total: -42.72 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -1.05 Total: -20.00 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.88 -8.64 -44.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188425726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.190 kcal (2) G-P(sol) polarization free energy of solvation -35.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds