Wall clock time and date at job start Tue Mar 31 2020 22:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46576 * 2 1 4 4 N 1.35038 * 126.38427 * 265.01677 * 3 2 1 5 5 H 0.97001 * 124.88647 * 0.02703 * 4 3 2 6 6 N 1.28469 * 110.22932 * 180.02562 * 4 3 2 7 7 C 1.31807 * 110.07511 * 0.02562 * 6 4 3 8 8 C 1.47712 * 126.51752 * 180.02562 * 7 6 4 9 9 O 1.21565 * 119.99794 * 184.90214 * 8 7 6 10 10 N 1.34776 * 119.99866 * 4.62681 * 8 7 6 11 11 C 1.46503 * 120.00074 * 354.71962 * 10 8 7 12 12 C 1.50698 * 109.46750 * 84.57528 * 11 10 8 13 13 H 1.08005 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99757 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00163 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00246 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46720 * 60.00156 * 16 14 12 18 18 H 1.48500 * 109.47614 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47426 * 300.00518 * 16 14 12 20 20 C 1.46495 * 119.99783 * 174.72185 * 10 8 7 21 21 C 1.53002 * 109.47333 * 94.97211 * 20 10 8 22 22 C 1.52998 * 109.47162 * 179.97438 * 21 20 10 23 23 C 1.53001 * 109.47161 * 64.99990 * 22 21 20 24 24 C 1.53005 * 109.47296 * 185.00300 * 22 21 20 25 25 C 1.35365 * 126.38745 * 85.35116 * 3 2 1 26 26 N 1.48005 * 127.24912 * 359.97438 * 25 3 2 27 27 O 1.21795 * 120.00000 * 270.21476 * 26 25 3 28 28 O 1.21803 * 119.99600 * 90.21490 * 26 25 3 29 29 H 1.09006 * 109.46804 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47243 * 299.99809 * 1 2 3 31 31 H 1.08996 * 109.47089 * 60.00294 * 1 2 3 32 32 H 1.08998 * 109.47243 * 240.00191 * 2 1 3 33 33 H 1.08997 * 109.47188 * 119.99163 * 2 1 3 34 34 H 1.09001 * 109.46710 * 204.57364 * 11 10 8 35 35 H 1.08997 * 109.47155 * 324.57354 * 11 10 8 36 36 H 0.96996 * 120.00286 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47515 * 214.97342 * 20 10 8 38 38 H 1.08997 * 109.47191 * 334.97208 * 20 10 8 39 39 H 1.08997 * 109.47201 * 300.00046 * 21 20 10 40 40 H 1.09005 * 109.46854 * 60.00142 * 21 20 10 41 41 H 1.08997 * 109.47291 * 305.00175 * 22 21 20 42 42 H 1.09002 * 109.47222 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47072 * 300.00197 * 23 22 21 44 44 H 1.09003 * 109.46546 * 60.00215 * 23 22 21 45 45 H 1.08998 * 109.46602 * 59.99642 * 24 22 21 46 46 H 1.08992 * 109.47064 * 180.02562 * 24 22 21 47 47 H 1.09004 * 109.46639 * 299.99849 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3882 2.1447 -1.0830 5 1 2.3593 1.8245 -1.9982 6 7 2.7706 3.3183 -0.7269 7 6 2.6938 3.4410 0.5832 8 6 3.0437 4.6372 1.3760 9 8 3.0121 4.5921 2.5904 10 7 3.4032 5.7770 0.7531 11 6 3.5593 5.7979 -0.7035 12 6 2.2172 6.0277 -1.3492 13 1 1.3359 6.1459 -0.7360 14 6 2.1142 6.0870 -2.7228 15 7 3.1871 5.9426 -3.4696 16 14 0.4505 6.3711 -3.5234 17 1 -0.1036 7.6706 -3.0656 18 1 0.6087 6.3924 -4.9998 19 1 -0.4764 5.2757 -3.1411 20 6 3.6378 6.9950 1.5324 21 6 5.1308 7.1228 1.8419 22 6 5.3759 8.3953 2.6553 23 6 4.6896 8.2702 4.0170 24 6 6.8800 8.5891 2.8581 25 6 2.2166 2.2074 1.0861 26 7 1.9686 1.8528 2.5015 27 8 0.8743 2.0540 2.9970 28 8 2.8589 1.3598 3.1707 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.2400 6.6015 -0.9844 35 1 3.9654 4.8437 -1.0391 36 1 3.1146 5.9839 -4.4359 37 1 3.3101 7.8622 0.9590 38 1 3.0766 6.9432 2.4654 39 1 5.4585 6.2558 2.4153 40 1 5.6920 7.1747 0.9089 41 1 4.9680 9.2528 2.1203 42 1 4.8646 9.1766 4.5967 43 1 3.6181 8.1321 3.8725 44 1 5.0976 7.4127 4.5520 45 1 7.3689 8.6782 1.8880 46 1 7.0546 9.4954 3.4380 47 1 7.2880 7.7316 3.3932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192521356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:59 Heat of formation + Delta-G solvation = 22.732312 kcal Electronic energy + Delta-G solvation = -30997.692827 eV Core-core repulsion = 26799.487450 eV Total energy + Delta-G solvation = -4198.205377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.09348 -41.37589 -39.14184 -36.59102 -36.07545 -35.02261 -34.53801 -32.59655 -32.29905 -30.23779 -29.00703 -27.10236 -27.00135 -26.28326 -24.56033 -23.87608 -23.17145 -22.02124 -21.20134 -19.77124 -18.84347 -18.41686 -18.36060 -17.35710 -16.75691 -16.51303 -16.30800 -15.70394 -15.59467 -14.97258 -14.61291 -14.56239 -14.33687 -13.91737 -13.64366 -13.30549 -13.09975 -12.78474 -12.44437 -12.31947 -12.06092 -12.03962 -11.91023 -11.63008 -11.47502 -11.27270 -11.10867 -11.07051 -11.02698 -10.87168 -10.75297 -10.71729 -10.50920 -10.33336 -10.20678 -10.00377 -9.77462 -9.68187 -9.58672 -9.30776 -8.55217 -7.83588 -6.19352 -4.22328 0.94694 1.44478 1.61465 1.76169 2.82744 3.15839 3.21620 3.25607 3.53394 3.72874 4.16345 4.28644 4.41747 4.55596 4.84749 4.98406 5.07455 5.10000 5.12357 5.14791 5.15984 5.24901 5.50130 5.56849 5.64527 5.73268 5.74130 5.82318 5.89376 5.92463 5.98431 6.00788 6.11143 6.24821 6.32122 6.39399 6.60104 6.65250 6.68592 6.71077 6.74202 7.24108 7.47884 7.69813 7.80767 8.02734 8.05581 8.13249 8.67275 8.83257 9.40812 10.88015 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007735 B = 0.005437 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.925216 B = 5148.662922 C = 7948.071359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.066 4.066 3 C 0.074 3.926 4 N -0.367 5.367 5 H 0.457 0.543 6 N -0.148 5.148 7 C 0.045 3.955 8 C 0.589 3.411 9 O -0.556 6.556 10 N -0.574 5.574 11 C 0.229 3.771 12 C -0.516 4.516 13 H 0.054 0.946 14 C 0.071 3.929 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.280 1.280 20 C 0.118 3.882 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.108 4.108 26 N 0.067 4.933 27 O -0.139 6.139 28 O -0.138 6.138 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.038 0.962 35 H 0.062 0.938 36 H 0.263 0.737 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.992 -6.752 4.026 7.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 C -0.055 4.055 4 N -0.082 5.082 5 H 0.304 0.696 6 N 0.019 4.981 7 C -0.119 4.119 8 C 0.374 3.626 9 O -0.435 6.435 10 N -0.302 5.302 11 C 0.110 3.890 12 C -0.555 4.555 13 H 0.072 0.928 14 C -0.132 4.132 15 N -0.528 5.528 16 Si 0.715 3.285 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.005 4.005 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.205 4.205 24 C -0.202 4.202 25 C -0.202 4.202 26 N 0.599 4.401 27 O -0.362 6.362 28 O -0.362 6.362 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.491 -5.936 2.734 6.703 hybrid contribution -1.269 -0.384 -0.319 1.364 sum 0.222 -6.320 2.416 6.769 Atomic orbital electron populations 1.21831 0.92832 1.02958 1.03546 1.20371 0.97528 0.87605 1.04999 1.20809 1.02227 0.96419 0.86044 1.43643 1.46073 1.08926 1.09519 0.69625 1.74968 1.13290 0.98316 1.11551 1.21867 1.06034 0.94104 0.89871 1.16784 0.78100 0.81944 0.85785 1.90782 1.56036 1.83956 1.12678 1.48131 1.63436 1.07876 1.10775 1.19826 0.97748 0.99634 0.71822 1.21277 0.93573 1.49203 0.91428 0.92767 1.24782 0.96261 0.95168 0.96946 1.69915 1.27870 1.49802 1.05204 0.86742 0.84487 0.79061 0.78196 1.20109 1.21180 1.20573 1.21496 0.95684 0.86932 0.96348 1.21996 0.97005 0.97593 1.00065 1.21045 0.95748 0.98046 0.96394 1.21887 1.00998 1.01178 0.96472 1.21820 0.95764 1.01191 1.01432 1.20420 1.19546 0.97568 0.82668 1.42103 0.99789 0.97229 1.00979 1.94520 1.11588 1.56438 1.73683 1.94513 1.38630 1.43030 1.60015 0.90995 0.91438 0.91863 0.88943 0.88992 0.94446 0.92006 0.92767 0.90243 0.90335 0.91815 0.91600 0.91142 0.93226 0.92276 0.92665 0.92752 0.93018 0.92852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.09 16 2 C -0.07 -0.65 6.49 -27.88 -0.18 -0.83 16 3 C 0.07 1.07 6.48 -82.21 -0.53 0.53 16 4 N -0.37 -5.42 6.83 33.50 0.23 -5.20 16 5 H 0.46 4.94 8.96 -190.44 -1.71 3.23 16 6 N -0.15 -2.91 7.90 33.42 0.26 -2.65 16 7 C 0.04 0.94 6.75 -82.76 -0.56 0.38 16 8 C 0.59 13.34 7.63 -12.39 -0.09 13.24 16 9 O -0.56 -13.40 16.04 5.31 0.09 -13.31 16 10 N -0.57 -12.39 2.47 -176.23 -0.44 -12.82 16 11 C 0.23 5.38 4.78 -5.19 -0.02 5.35 16 12 C -0.52 -13.04 8.06 -34.44 -0.28 -13.32 16 13 H 0.05 1.44 7.81 -52.48 -0.41 1.03 16 14 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -23.28 13.29 55.43 0.74 -22.54 16 16 Si 0.89 20.04 29.54 -169.99 -5.02 15.02 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 20 C 0.12 2.19 5.15 -4.04 -0.02 2.17 16 21 C -0.13 -2.06 5.01 -26.73 -0.13 -2.19 16 22 C -0.09 -1.23 2.92 -90.62 -0.26 -1.50 16 23 C -0.15 -1.90 8.95 37.16 0.33 -1.57 16 24 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 25 C -0.11 -2.03 6.75 -79.74 -0.54 -2.56 16 26 N 0.07 1.31 3.95 34.07 0.13 1.44 16 27 O -0.14 -2.77 19.25 -29.46 -0.57 -3.34 16 28 O -0.14 -2.72 19.25 -29.46 -0.57 -3.29 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.04 0.92 8.03 -51.93 -0.42 0.50 16 35 H 0.06 1.51 5.64 -51.93 -0.29 1.21 16 36 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 37 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 38 H 0.08 1.47 5.78 -51.93 -0.30 1.17 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -31.24 398.40 -9.34 -40.58 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -8.52 Total: 1.14 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -1.68 Total: -1.03 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.93 Total: -41.77 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.05 Total: -19.95 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.24 -9.34 -40.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192521356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.307 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds