Wall clock time and date at job start Tue Mar 31 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46576 * 2 1 4 4 N 1.35038 * 126.38427 * 265.01677 * 3 2 1 5 5 H 0.97001 * 124.88647 * 0.02703 * 4 3 2 6 6 N 1.28469 * 110.22932 * 180.02562 * 4 3 2 7 7 C 1.31807 * 110.07511 * 0.02562 * 6 4 3 8 8 C 1.47712 * 126.51752 * 180.02562 * 7 6 4 9 9 O 1.21565 * 119.99794 * 184.90214 * 8 7 6 10 10 N 1.34776 * 119.99866 * 4.62681 * 8 7 6 11 11 C 1.46503 * 120.00074 * 354.71962 * 10 8 7 12 12 C 1.50698 * 109.46750 * 84.57528 * 11 10 8 13 13 H 1.08005 * 120.00307 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99757 * 179.97438 * 12 11 10 15 15 N 1.31518 * 120.00163 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00246 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46720 * 60.00156 * 16 14 12 18 18 H 1.48500 * 109.47614 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47426 * 300.00518 * 16 14 12 20 20 C 1.46495 * 119.99783 * 174.72185 * 10 8 7 21 21 C 1.53002 * 109.47333 * 94.97211 * 20 10 8 22 22 C 1.52998 * 109.47162 * 179.97438 * 21 20 10 23 23 C 1.53001 * 109.47161 * 64.99990 * 22 21 20 24 24 C 1.53005 * 109.47296 * 185.00300 * 22 21 20 25 25 C 1.35365 * 126.38745 * 85.35116 * 3 2 1 26 26 N 1.48005 * 127.24912 * 359.97438 * 25 3 2 27 27 O 1.21795 * 120.00000 * 270.21476 * 26 25 3 28 28 O 1.21803 * 119.99600 * 90.21490 * 26 25 3 29 29 H 1.09006 * 109.46804 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47243 * 299.99809 * 1 2 3 31 31 H 1.08996 * 109.47089 * 60.00294 * 1 2 3 32 32 H 1.08998 * 109.47243 * 240.00191 * 2 1 3 33 33 H 1.08997 * 109.47188 * 119.99163 * 2 1 3 34 34 H 1.09001 * 109.46710 * 204.57364 * 11 10 8 35 35 H 1.08997 * 109.47155 * 324.57354 * 11 10 8 36 36 H 0.96996 * 120.00286 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.47515 * 214.97342 * 20 10 8 38 38 H 1.08997 * 109.47191 * 334.97208 * 20 10 8 39 39 H 1.08997 * 109.47201 * 300.00046 * 21 20 10 40 40 H 1.09005 * 109.46854 * 60.00142 * 21 20 10 41 41 H 1.08997 * 109.47291 * 305.00175 * 22 21 20 42 42 H 1.09002 * 109.47222 * 179.97438 * 23 22 21 43 43 H 1.08997 * 109.47072 * 300.00197 * 23 22 21 44 44 H 1.09003 * 109.46546 * 60.00215 * 23 22 21 45 45 H 1.08998 * 109.46602 * 59.99642 * 24 22 21 46 46 H 1.08992 * 109.47064 * 180.02562 * 24 22 21 47 47 H 1.09004 * 109.46639 * 299.99849 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.3882 2.1447 -1.0830 5 1 2.3593 1.8245 -1.9982 6 7 2.7706 3.3183 -0.7269 7 6 2.6938 3.4410 0.5832 8 6 3.0437 4.6372 1.3760 9 8 3.0121 4.5921 2.5904 10 7 3.4032 5.7770 0.7531 11 6 3.5593 5.7979 -0.7035 12 6 2.2172 6.0277 -1.3492 13 1 1.3359 6.1459 -0.7360 14 6 2.1142 6.0870 -2.7228 15 7 3.1871 5.9426 -3.4696 16 14 0.4505 6.3711 -3.5234 17 1 -0.1036 7.6706 -3.0656 18 1 0.6087 6.3924 -4.9998 19 1 -0.4764 5.2757 -3.1411 20 6 3.6378 6.9950 1.5324 21 6 5.1308 7.1228 1.8419 22 6 5.3759 8.3953 2.6553 23 6 4.6896 8.2702 4.0170 24 6 6.8800 8.5891 2.8581 25 6 2.2166 2.2074 1.0861 26 7 1.9686 1.8528 2.5015 27 8 0.8743 2.0540 2.9970 28 8 2.8589 1.3598 3.1707 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 4.2400 6.6015 -0.9844 35 1 3.9654 4.8437 -1.0391 36 1 3.1146 5.9839 -4.4359 37 1 3.3101 7.8622 0.9590 38 1 3.0766 6.9432 2.4654 39 1 5.4585 6.2558 2.4153 40 1 5.6920 7.1747 0.9089 41 1 4.9680 9.2528 2.1203 42 1 4.8646 9.1766 4.5967 43 1 3.6181 8.1321 3.8725 44 1 5.0976 7.4127 4.5520 45 1 7.3689 8.6782 1.8880 46 1 7.0546 9.4954 3.4380 47 1 7.2880 7.7316 3.3932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192521356.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:58 Heat of formation + Delta-G solvation = 5.792285 kcal Electronic energy + Delta-G solvation = -30998.427401 eV Core-core repulsion = 26799.487450 eV Total energy + Delta-G solvation = -4198.939951 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.48573 -42.89171 -40.84255 -37.95842 -37.61906 -36.58738 -35.61548 -34.49104 -33.73286 -31.50343 -30.41928 -28.93650 -28.02336 -27.70312 -26.04520 -25.08316 -24.81062 -23.46698 -22.59398 -20.93206 -20.33578 -19.95808 -19.86448 -18.81174 -18.58331 -18.06520 -17.76364 -17.24043 -17.17564 -16.40126 -16.18991 -15.88250 -15.47178 -15.11836 -14.92795 -14.62149 -14.45130 -14.29727 -13.82560 -13.68517 -13.64443 -13.16778 -12.89764 -12.87465 -12.84550 -12.79658 -12.69791 -12.51495 -12.33516 -12.30040 -12.21808 -12.16231 -12.00999 -11.72931 -11.59166 -11.56277 -11.45309 -11.30810 -11.11710 -10.69362 -10.48404 -9.59840 -8.15331 -6.24492 -0.60517 0.07698 0.19184 0.28020 1.35448 1.39878 1.45427 1.55460 1.94421 2.08205 2.39965 2.99243 3.10582 3.16414 3.34621 3.64834 3.88994 3.90352 4.04383 4.05889 4.09057 4.14520 4.30264 4.49647 4.51084 4.61763 4.73036 4.79222 4.83351 4.86293 4.87961 4.91279 5.00992 5.09828 5.11170 5.15391 5.21184 5.26819 5.32297 5.44573 5.48180 5.56326 5.71911 5.76815 6.10200 6.29953 6.39800 6.47136 6.79513 6.99128 7.41608 8.91327 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007735 B = 0.005437 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3618.925216 B = 5148.662922 C = 7948.071359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.066 4.066 3 C 0.114 3.886 4 N -0.349 5.349 5 H 0.475 0.525 6 N -0.173 5.173 7 C 0.017 3.983 8 C 0.580 3.420 9 O -0.581 6.581 10 N -0.575 5.575 11 C 0.246 3.754 12 C -0.521 4.521 13 H 0.036 0.964 14 C 0.040 3.960 15 N -0.909 5.909 16 Si 0.939 3.061 17 H -0.280 1.280 18 H -0.278 1.278 19 H -0.277 1.277 20 C 0.114 3.886 21 C -0.117 4.117 22 C -0.090 4.090 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.142 4.142 26 N 0.070 4.930 27 O -0.156 6.156 28 O -0.142 6.142 29 H 0.102 0.898 30 H 0.040 0.960 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.266 0.734 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.045 0.955 44 H 0.046 0.954 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.649 -7.753 2.834 8.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.104 4.104 3 C -0.016 4.016 4 N -0.066 5.066 5 H 0.326 0.674 6 N -0.007 5.007 7 C -0.146 4.146 8 C 0.366 3.634 9 O -0.462 6.462 10 N -0.303 5.303 11 C 0.125 3.875 12 C -0.560 4.560 13 H 0.054 0.946 14 C -0.161 4.161 15 N -0.548 5.548 16 Si 0.766 3.234 17 H -0.206 1.206 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.007 4.007 21 C -0.155 4.155 22 C -0.109 4.109 23 C -0.203 4.203 24 C -0.198 4.198 25 C -0.236 4.236 26 N 0.601 4.399 27 O -0.376 6.376 28 O -0.367 6.367 29 H 0.120 0.880 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.156 0.844 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.135 -6.923 1.523 7.179 hybrid contribution -1.166 -0.133 0.032 1.174 sum -0.031 -7.056 1.554 7.226 Atomic orbital electron populations 1.21845 0.92182 1.04616 1.02385 1.20710 0.97809 0.84466 1.07451 1.21473 0.98472 0.97503 0.84157 1.43682 1.44599 1.07674 1.10658 0.67375 1.74820 1.14264 1.00603 1.11020 1.21713 1.07895 0.94438 0.90564 1.17122 0.77799 0.82704 0.85816 1.90741 1.57267 1.84551 1.13637 1.48191 1.63154 1.08648 1.10349 1.19509 0.96673 0.98617 0.72674 1.21255 0.93452 1.49634 0.91662 0.94595 1.25279 0.98839 0.94805 0.97132 1.69985 1.29221 1.50143 1.05489 0.85927 0.81202 0.78601 0.77708 1.20567 1.20280 1.20292 1.21666 0.97431 0.85932 0.95720 1.21893 0.94859 0.98710 1.00054 1.21049 0.97293 0.96459 0.96081 1.21864 1.00006 1.01964 0.96456 1.21790 0.94105 1.02068 1.01880 1.20600 1.22148 0.98013 0.82815 1.42192 0.99494 0.96806 1.01429 1.94505 1.11922 1.57030 1.74158 1.94488 1.38566 1.43122 1.60491 0.87970 0.94112 0.91536 0.84420 0.88572 0.95863 0.92649 0.92497 0.90023 0.90845 0.93415 0.92133 0.90334 0.90886 0.93549 0.93530 0.92606 0.91010 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.07 -1.07 6.49 29.85 0.19 -0.87 16 3 C 0.11 3.08 6.48 41.40 0.27 3.35 16 4 N -0.35 -9.73 6.83 -47.93 -0.33 -10.06 16 5 H 0.47 9.02 8.96 -219.99 -1.97 7.05 16 6 N -0.17 -6.80 7.90 -48.17 -0.38 -7.19 16 7 C 0.02 0.72 6.75 42.46 0.29 1.00 16 8 C 0.58 27.30 7.63 86.75 0.66 27.96 16 9 O -0.58 -29.25 16.04 -3.92 -0.06 -29.31 16 10 N -0.58 -25.83 2.47 -829.73 -2.05 -27.88 16 11 C 0.25 11.82 4.78 85.63 0.41 12.23 16 12 C -0.52 -26.68 8.06 25.60 0.21 -26.48 16 13 H 0.04 1.95 7.81 -2.91 -0.02 1.92 16 14 C 0.04 2.03 5.46 84.65 0.46 2.49 16 15 N -0.91 -47.17 13.29 21.45 0.28 -46.89 16 16 Si 0.94 40.51 29.54 68.60 2.03 42.54 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 C 0.11 4.40 5.15 86.38 0.45 4.85 16 21 C -0.12 -3.86 5.01 30.59 0.15 -3.70 16 22 C -0.09 -2.33 2.92 -10.79 -0.03 -2.36 16 23 C -0.15 -3.69 8.95 71.98 0.64 -3.04 16 24 C -0.14 -3.09 9.19 71.98 0.66 -2.43 16 25 C -0.14 -5.31 6.75 36.52 0.25 -5.07 16 26 N 0.07 2.78 3.95 -46.13 -0.18 2.60 16 27 O -0.16 -6.34 19.25 18.89 0.36 -5.98 16 28 O -0.14 -5.65 19.25 18.88 0.36 -5.29 16 29 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.02 1.18 8.03 -2.39 -0.02 1.16 16 35 H 0.06 2.77 5.64 -2.39 -0.01 2.75 16 36 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 37 H 0.08 3.06 8.11 -2.39 -0.02 3.04 16 38 H 0.07 2.89 5.78 -2.39 -0.01 2.88 16 39 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.28 6.57 -2.39 -0.02 1.26 16 44 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 Total: -1.00 -69.20 398.40 4.38 -64.83 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.98 Total: 16.42 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: 5.32 Total: 6.21 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -2.65 Total: -89.41 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: 0.66 Total: -40.58 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -69.20 4.38 -64.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192521356.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.621 kcal (2) G-P(sol) polarization free energy of solvation -69.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds