Wall clock time and date at job start Tue Mar 31 2020 21:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31127 * 126.55076 * 2 1 4 4 C 1.34495 * 105.61934 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.29321 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.54447 * 345.11154 * 5 4 3 7 7 C 1.53103 * 109.50521 * 105.21860 * 5 4 3 8 8 N 1.47016 * 109.25759 * 176.78673 * 7 5 4 9 9 C 1.46894 * 111.00267 * 177.60872 * 8 7 5 10 10 C 1.52997 * 109.47515 * 189.68043 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00111 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.47162 * 90.00410 * 15 13 11 17 17 H 1.07998 * 119.99576 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47235 * 59.99855 * 20 18 16 22 22 H 1.48500 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47142 * 299.99797 * 20 18 16 24 24 C 1.47023 * 110.75003 * 301.38500 * 8 7 5 25 25 C 1.53096 * 109.25793 * 58.61706 * 24 8 7 26 26 O 1.43010 * 109.25909 * 303.14957 * 25 24 8 27 27 N 1.29951 * 107.41866 * 0.24526 * 4 3 2 28 28 O 1.21296 * 110.25183 * 359.57915 * 27 4 3 29 29 H 1.09002 * 109.47321 * 89.99617 * 1 2 3 30 30 H 1.09006 * 109.46872 * 209.99828 * 1 2 3 31 31 H 1.09005 * 109.46946 * 329.99373 * 1 2 3 32 32 H 1.08994 * 109.50442 * 56.85468 * 7 5 4 33 33 H 1.09000 * 109.50474 * 296.71700 * 7 5 4 34 34 H 1.09002 * 109.47104 * 69.67775 * 9 8 7 35 35 H 1.08998 * 109.46828 * 309.68608 * 9 8 7 36 36 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 37 37 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 38 38 H 1.08995 * 109.47620 * 89.99771 * 14 13 11 39 39 H 1.09006 * 109.47028 * 209.99878 * 14 13 11 40 40 H 1.09002 * 109.47109 * 329.99455 * 14 13 11 41 41 H 1.09000 * 109.47018 * 209.99971 * 15 13 11 42 42 H 1.09000 * 109.47828 * 330.00266 * 15 13 11 43 43 H 0.97001 * 119.99961 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.50098 * 178.54977 * 24 8 7 45 45 H 1.09003 * 109.50356 * 298.63704 * 24 8 7 46 46 H 1.09004 * 109.50493 * 63.08925 * 25 24 8 47 47 H 1.09001 * 109.50202 * 183.21693 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0003 6 1 4.5804 2.4206 -0.2644 7 6 5.4457 1.3478 1.3930 8 7 6.7200 2.0807 1.3669 9 6 7.3355 2.1140 2.7002 10 6 8.5230 3.0788 2.6898 11 6 9.1540 3.1134 4.0579 12 8 8.6991 2.4331 4.9529 13 7 10.2246 3.8997 4.2864 14 6 10.7743 4.7211 3.2052 15 6 10.8384 3.9329 5.6162 16 6 11.9114 2.8781 5.7007 17 1 12.1153 2.2459 4.8492 18 6 12.6326 2.7201 6.8651 19 7 12.3846 3.4903 7.9019 20 14 13.9631 1.4131 6.9696 21 1 14.9991 1.6778 5.9390 22 1 14.5861 1.4475 8.3172 23 1 13.3624 0.0754 6.7354 24 6 7.6370 1.4959 0.3776 25 6 6.9804 1.5353 -1.0048 26 8 5.7289 0.8452 -0.9524 27 7 3.4645 -0.7242 -0.0044 28 8 2.3029 -1.0735 0.0004 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 5.6274 0.3121 1.6799 33 1 4.7729 1.8132 2.1133 34 1 7.6813 1.1150 2.9658 35 1 6.6005 2.4503 3.4314 36 1 8.1771 4.0778 2.4242 37 1 9.2580 2.7424 1.9586 38 1 10.2869 5.6960 3.2056 39 1 11.8461 4.8506 3.3563 40 1 10.5992 4.2277 2.2491 41 1 11.2797 4.9146 5.7883 42 1 10.0778 3.7389 6.3725 43 1 12.8922 3.3794 8.7210 44 1 8.5637 2.0694 0.3569 45 1 7.8542 0.4628 0.6489 46 1 6.8127 2.5715 -1.2987 47 1 7.6329 1.0512 -1.7315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330623959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:47 Heat of formation + Delta-G solvation = 3.699162 kcal Electronic energy + Delta-G solvation = -29074.646672 eV Core-core repulsion = 24875.615957 eV Total energy + Delta-G solvation = -4199.030716 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.97467 -40.12189 -38.95918 -36.50883 -36.09595 -34.80053 -34.12438 -32.67195 -31.61976 -31.12362 -29.25697 -28.19367 -27.21606 -25.78603 -25.03042 -23.92284 -23.62050 -22.45047 -21.27695 -20.52734 -18.55258 -18.35061 -17.97357 -16.98013 -16.63786 -16.54838 -16.00554 -15.65310 -15.51846 -15.43148 -14.98630 -14.88434 -14.60696 -14.16648 -13.94337 -13.85409 -13.76295 -13.41066 -12.93328 -12.57516 -12.46259 -12.34086 -12.22033 -12.09041 -12.02935 -11.85051 -11.77439 -11.57210 -11.42282 -11.17052 -11.02896 -10.92256 -10.76203 -10.55606 -10.37283 -10.16921 -9.94316 -9.65396 -8.92053 -8.63368 -8.44159 -7.65109 -6.05037 -4.09983 0.79144 1.74477 2.44920 2.77750 3.30673 3.35032 3.35490 3.38890 3.44227 3.71532 3.80216 4.08720 4.40333 4.44639 4.55403 4.64629 4.72193 4.76383 4.79391 4.92884 4.98102 5.10495 5.15350 5.21465 5.24986 5.28064 5.32070 5.36026 5.48303 5.51072 5.57446 5.61543 5.67926 5.81540 5.90223 6.00352 6.03318 6.20683 6.62639 6.73130 6.75032 7.05172 7.43622 7.53162 7.82054 7.91097 8.22591 8.41076 8.88866 9.08348 9.55000 11.02971 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.001973 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.770426 B =14187.260673 C =14469.628004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.176 3.824 3 N -0.474 5.474 4 C 0.176 3.824 5 C 0.190 3.810 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.535 5.535 9 C 0.073 3.927 10 C -0.134 4.134 11 C 0.504 3.496 12 O -0.545 6.545 13 N -0.603 5.603 14 C 0.084 3.916 15 C 0.245 3.755 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.008 3.992 25 C 0.068 3.932 26 O -0.376 6.376 27 N -0.356 5.356 28 O 0.082 5.918 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.264 0.736 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -2.558 -20.888 29.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.044 4.044 3 N -0.209 5.209 4 C -0.098 4.098 5 C 0.130 3.870 6 H 0.119 0.881 7 C -0.097 4.097 8 N -0.260 5.260 9 C -0.055 4.055 10 C -0.175 4.175 11 C 0.290 3.710 12 O -0.423 6.423 13 N -0.335 5.335 14 C -0.060 4.060 15 C 0.125 3.875 16 C -0.566 4.566 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.120 4.120 25 C -0.008 4.008 26 O -0.294 6.294 27 N -0.061 5.061 28 O 0.020 5.980 29 H 0.121 0.879 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.453 -2.612 -20.469 29.054 hybrid contribution 1.069 -1.300 0.480 1.750 sum -19.384 -3.912 -19.989 28.118 Atomic orbital electron populations 1.20419 0.79965 1.06079 1.05516 1.28877 0.99005 0.80587 0.95963 1.71826 0.99718 1.28989 1.20330 1.25198 0.94405 0.88095 1.02074 1.19933 0.82501 0.94722 0.89813 0.88076 1.22645 0.92617 0.98313 0.96136 1.62199 1.03641 1.52268 1.07882 1.21837 0.96346 0.99099 0.88180 1.21635 0.97590 1.01788 0.96473 1.20261 0.80865 0.80293 0.89557 1.90671 1.63103 1.42266 1.46305 1.48155 1.29337 1.42338 1.13655 1.21633 1.00238 0.94214 0.89922 1.19284 0.93276 0.97128 0.77763 1.21389 1.18043 1.18206 0.98924 0.92595 1.24943 0.97524 0.96269 0.95428 1.69924 1.41227 1.38904 1.03296 0.86555 0.81563 0.82164 0.77109 1.20252 1.21139 1.20215 1.22934 0.97038 0.99343 0.92697 1.22763 0.83938 0.97749 0.96395 1.88005 1.25711 1.57117 1.58572 1.74716 0.96905 1.15613 1.18884 1.85341 1.11522 1.35844 1.65284 0.87948 0.88266 0.87565 0.93178 0.88894 0.93428 0.89596 0.88692 0.89581 0.93684 0.90834 0.92474 0.95002 0.93857 0.92652 0.88631 0.93372 0.91610 0.87695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 36.01 0.38 0.23 16 2 C 0.18 1.40 8.51 -13.06 -0.11 1.29 16 3 N -0.47 -5.12 11.55 -9.87 -0.11 -5.23 16 4 C 0.18 2.15 7.11 -156.37 -1.11 1.04 16 5 C 0.19 2.19 3.36 -27.83 -0.09 2.10 16 6 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 7 C 0.03 0.38 4.91 -3.71 -0.02 0.37 16 8 N -0.53 -6.36 4.73 -234.30 -1.11 -7.46 16 9 C 0.07 1.04 4.25 -3.83 -0.02 1.02 16 10 C -0.13 -1.93 4.18 -27.88 -0.12 -2.05 16 11 C 0.50 10.38 7.67 -10.98 -0.08 10.30 16 12 O -0.55 -13.71 15.56 5.56 0.09 -13.63 16 13 N -0.60 -12.77 2.86 -182.96 -0.52 -13.30 16 14 C 0.08 1.31 10.24 59.84 0.61 1.92 16 15 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 16 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 17 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 18 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.78 13.29 55.43 0.74 -26.05 16 20 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.01 0.08 5.43 -3.71 -0.02 0.06 16 25 C 0.07 0.63 7.01 37.21 0.26 0.89 16 26 O -0.38 -4.55 10.45 -35.23 -0.37 -4.92 16 27 N -0.36 -4.57 12.16 30.90 0.38 -4.19 16 28 O 0.08 0.84 11.31 18.11 0.20 1.04 16 29 H 0.10 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.10 0.04 8.14 -51.93 -0.42 -0.38 16 31 H 0.11 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 34 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 35 H 0.09 1.29 8.00 -51.93 -0.42 0.88 16 36 H 0.09 1.19 8.11 -51.93 -0.42 0.77 16 37 H 0.09 1.09 5.76 -51.93 -0.30 0.79 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.06 0.71 6.44 -51.93 -0.33 0.38 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 0.88 6.37 -51.93 -0.33 0.55 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -36.78 389.77 -7.84 -44.62 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: -7.21 Total: -3.62 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.77 Total: 9.86 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.63 Total: -56.23 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.08 Total: -17.51 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.78 -7.84 -44.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330623959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.316 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds