Wall clock time and date at job start Tue Mar 31 2020 21:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31127 * 126.55076 * 2 1 4 4 C 1.34495 * 105.61934 * 179.97438 * 3 2 1 5 5 C 1.50693 * 126.29321 * 179.97438 * 4 3 2 6 6 H 1.09005 * 109.54447 * 345.11154 * 5 4 3 7 7 C 1.53103 * 109.50521 * 105.21860 * 5 4 3 8 8 N 1.47016 * 109.25759 * 176.78673 * 7 5 4 9 9 C 1.46894 * 111.00267 * 177.60872 * 8 7 5 10 10 C 1.52997 * 109.47515 * 189.68043 * 9 8 7 11 11 C 1.50701 * 109.47212 * 179.97438 * 10 9 8 12 12 O 1.21280 * 119.99781 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99795 * 179.97438 * 11 10 9 14 14 C 1.46490 * 120.00111 * 0.02562 * 13 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.47162 * 90.00410 * 15 13 11 17 17 H 1.07998 * 119.99576 * 359.97438 * 16 15 13 18 18 C 1.37873 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47235 * 59.99855 * 20 18 16 22 22 H 1.48500 * 109.47168 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47142 * 299.99797 * 20 18 16 24 24 C 1.47023 * 110.75003 * 301.38500 * 8 7 5 25 25 C 1.53096 * 109.25793 * 58.61706 * 24 8 7 26 26 O 1.43010 * 109.25909 * 303.14957 * 25 24 8 27 27 N 1.29951 * 107.41866 * 0.24526 * 4 3 2 28 28 O 1.21296 * 110.25183 * 359.57915 * 27 4 3 29 29 H 1.09002 * 109.47321 * 89.99617 * 1 2 3 30 30 H 1.09006 * 109.46872 * 209.99828 * 1 2 3 31 31 H 1.09005 * 109.46946 * 329.99373 * 1 2 3 32 32 H 1.08994 * 109.50442 * 56.85468 * 7 5 4 33 33 H 1.09000 * 109.50474 * 296.71700 * 7 5 4 34 34 H 1.09002 * 109.47104 * 69.67775 * 9 8 7 35 35 H 1.08998 * 109.46828 * 309.68608 * 9 8 7 36 36 H 1.09002 * 109.47153 * 59.99762 * 10 9 8 37 37 H 1.09001 * 109.46832 * 299.99953 * 10 9 8 38 38 H 1.08995 * 109.47620 * 89.99771 * 14 13 11 39 39 H 1.09006 * 109.47028 * 209.99878 * 14 13 11 40 40 H 1.09002 * 109.47109 * 329.99455 * 14 13 11 41 41 H 1.09000 * 109.47018 * 209.99971 * 15 13 11 42 42 H 1.09000 * 109.47828 * 330.00266 * 15 13 11 43 43 H 0.97001 * 119.99961 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.50098 * 178.54977 * 24 8 7 45 45 H 1.09003 * 109.50356 * 298.63704 * 24 8 7 46 46 H 1.09004 * 109.50493 * 63.08925 * 25 24 8 47 47 H 1.09001 * 109.50202 * 183.21693 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 0.0006 5 6 4.8111 1.3887 0.0003 6 1 4.5804 2.4206 -0.2644 7 6 5.4457 1.3478 1.3930 8 7 6.7200 2.0807 1.3669 9 6 7.3355 2.1140 2.7002 10 6 8.5230 3.0788 2.6898 11 6 9.1540 3.1134 4.0579 12 8 8.6991 2.4331 4.9529 13 7 10.2246 3.8997 4.2864 14 6 10.7743 4.7211 3.2052 15 6 10.8384 3.9329 5.6162 16 6 11.9114 2.8781 5.7007 17 1 12.1153 2.2459 4.8492 18 6 12.6326 2.7201 6.8651 19 7 12.3846 3.4903 7.9019 20 14 13.9631 1.4131 6.9696 21 1 14.9991 1.6778 5.9390 22 1 14.5861 1.4475 8.3172 23 1 13.3624 0.0754 6.7354 24 6 7.6370 1.4959 0.3776 25 6 6.9804 1.5353 -1.0048 26 8 5.7289 0.8452 -0.9524 27 7 3.4645 -0.7242 -0.0044 28 8 2.3029 -1.0735 0.0004 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 5.6274 0.3121 1.6799 33 1 4.7729 1.8132 2.1133 34 1 7.6813 1.1150 2.9658 35 1 6.6005 2.4503 3.4314 36 1 8.1771 4.0778 2.4242 37 1 9.2580 2.7424 1.9586 38 1 10.2869 5.6960 3.2056 39 1 11.8461 4.8506 3.3563 40 1 10.5992 4.2277 2.2491 41 1 11.2797 4.9146 5.7883 42 1 10.0778 3.7389 6.3725 43 1 12.8922 3.3794 8.7210 44 1 8.5637 2.0694 0.3569 45 1 7.8542 0.4628 0.6489 46 1 6.8127 2.5715 -1.2987 47 1 7.6329 1.0512 -1.7315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330623959.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:46 Heat of formation + Delta-G solvation = -26.115751 kcal Electronic energy + Delta-G solvation = -29075.939544 eV Core-core repulsion = 24875.615957 eV Total energy + Delta-G solvation = -4200.323587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.76483 -41.12564 -40.47879 -37.46812 -36.95871 -36.55038 -34.80004 -34.75484 -32.69450 -32.11373 -29.90726 -29.72480 -28.40061 -27.26876 -26.09222 -25.17996 -24.63425 -23.74308 -22.32801 -21.39707 -19.94984 -19.32334 -18.77472 -18.71287 -18.14116 -17.51540 -17.19027 -17.11293 -16.84252 -16.37534 -16.30706 -16.02026 -15.64710 -15.48288 -14.99998 -14.76403 -14.32283 -14.17840 -14.12348 -13.86679 -13.75793 -13.59521 -13.45493 -13.34517 -13.11879 -13.02632 -12.86956 -12.78959 -12.74256 -12.54635 -12.46758 -12.21286 -12.20818 -11.95733 -11.76726 -11.71360 -11.11677 -10.79361 -10.66213 -10.62738 -9.65720 -9.42477 -8.24208 -6.39298 0.08648 0.96462 1.34398 1.38700 1.46009 1.82523 1.85087 2.04121 2.23089 2.37503 2.68076 2.95190 3.05026 3.12121 3.52759 3.70856 3.79607 3.81471 3.89416 3.99141 4.09924 4.21937 4.33408 4.38523 4.42941 4.46856 4.53925 4.59135 4.63049 4.67239 4.73228 4.78823 4.83463 4.85824 4.92187 4.95222 4.98093 5.03295 5.14516 5.22043 5.54385 5.65488 5.74408 5.82960 5.90514 6.04270 6.67738 6.78298 7.08275 7.26282 7.47089 8.82566 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.001973 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.770426 B =14187.260673 C =14469.628004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.190 3.810 3 N -0.499 5.499 4 C 0.162 3.838 5 C 0.196 3.804 6 H 0.112 0.888 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.080 3.920 10 C -0.113 4.113 11 C 0.494 3.506 12 O -0.604 6.604 13 N -0.610 5.610 14 C 0.078 3.922 15 C 0.258 3.742 16 C -0.543 4.543 17 H 0.053 0.947 18 C 0.005 3.995 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.258 1.258 22 H -0.278 1.278 23 H -0.279 1.279 24 C 0.004 3.996 25 C 0.067 3.933 26 O -0.395 6.395 27 N -0.389 5.389 28 O 0.079 5.921 29 H 0.126 0.874 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.028 0.972 33 H 0.093 0.907 34 H 0.021 0.979 35 H 0.071 0.929 36 H 0.127 0.873 37 H 0.115 0.885 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.097 0.903 41 H 0.024 0.976 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.117 0.883 45 H 0.031 0.969 46 H 0.083 0.917 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.234 -2.257 -23.647 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.029 4.029 3 N -0.234 5.234 4 C -0.111 4.111 5 C 0.136 3.864 6 H 0.129 0.871 7 C -0.093 4.093 8 N -0.248 5.248 9 C -0.048 4.048 10 C -0.153 4.153 11 C 0.283 3.717 12 O -0.486 6.486 13 N -0.341 5.341 14 C -0.064 4.064 15 C 0.136 3.864 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.792 3.208 21 H -0.183 1.183 22 H -0.203 1.203 23 H -0.205 1.205 24 C -0.123 4.123 25 C -0.009 4.009 26 O -0.314 6.314 27 N -0.096 5.096 28 O 0.017 5.983 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.042 0.958 42 H 0.014 0.986 43 H 0.076 0.924 44 H 0.135 0.865 45 H 0.050 0.950 46 H 0.102 0.898 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.699 -2.275 -23.287 31.240 hybrid contribution 1.024 -1.379 1.329 2.172 sum -19.675 -3.655 -21.959 29.709 Atomic orbital electron populations 1.20830 0.75912 1.07738 1.07404 1.29990 1.00622 0.79311 0.92962 1.71837 0.99494 1.30047 1.22011 1.25421 0.95210 0.88198 1.02295 1.19899 0.82350 0.95086 0.89065 0.87077 1.22589 0.92797 0.97006 0.96888 1.62225 1.03686 1.52199 1.06676 1.21651 0.96146 0.97668 0.89332 1.21541 0.97604 1.03593 0.92552 1.21360 0.80201 0.78811 0.91378 1.90642 1.64679 1.44530 1.48738 1.48192 1.29568 1.43296 1.13080 1.21961 0.99776 0.95113 0.89566 1.18752 0.91580 0.96115 0.79953 1.21679 1.18676 1.18716 0.99122 0.92834 1.25886 0.99973 0.98496 0.94997 1.70046 1.42371 1.40494 1.03863 0.85468 0.78804 0.78678 0.77860 1.18281 1.20302 1.20502 1.23089 0.97681 0.98681 0.92893 1.22983 0.83069 0.98912 0.95896 1.87992 1.26739 1.58061 1.58577 1.74688 0.98348 1.16200 1.20377 1.85293 1.11109 1.36411 1.65463 0.85630 0.85893 0.86484 0.95322 0.88871 0.96061 0.91010 0.85506 0.86676 0.91001 0.91701 0.88416 0.95780 0.98607 0.92389 0.86497 0.95037 0.89836 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 71.24 0.75 0.62 16 2 C 0.19 2.83 8.51 88.38 0.75 3.58 16 3 N -0.50 -10.52 11.55 -303.20 -3.50 -14.02 16 4 C 0.16 3.98 7.11 138.46 0.98 4.96 16 5 C 0.20 4.43 3.36 29.88 0.10 4.53 16 6 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 7 C 0.04 0.88 4.91 86.32 0.42 1.31 16 8 N -0.52 -11.81 4.73 -895.20 -4.23 -16.04 16 9 C 0.08 2.26 4.25 86.30 0.37 2.63 16 10 C -0.11 -3.00 4.18 29.85 0.12 -2.88 16 11 C 0.49 20.35 7.67 87.66 0.67 21.02 16 12 O -0.60 -31.75 15.56 -3.03 -0.05 -31.79 16 13 N -0.61 -25.73 2.86 -851.14 -2.43 -28.17 16 14 C 0.08 2.21 10.24 127.77 1.31 3.52 16 15 C 0.26 14.09 5.16 85.64 0.44 14.53 16 16 C -0.54 -31.68 9.39 25.60 0.24 -31.44 16 17 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 20 Si 0.97 45.37 29.54 68.60 2.03 47.40 16 21 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 24 C 0.00 0.08 5.43 86.31 0.47 0.55 16 25 C 0.07 1.08 7.01 72.01 0.50 1.58 16 26 O -0.40 -9.19 10.45 -148.98 -1.56 -10.75 16 27 N -0.39 -10.17 12.16 -60.32 -0.73 -10.90 16 28 O 0.08 1.58 11.31 74.85 0.85 2.43 16 29 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.12 -0.27 8.14 -2.38 -0.02 -0.29 16 31 H 0.12 0.08 8.14 -2.38 -0.02 0.06 16 32 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 2.18 8.09 -2.39 -0.02 2.17 16 34 H 0.02 0.71 8.08 -2.39 -0.02 0.69 16 35 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 36 H 0.13 2.66 8.11 -2.39 -0.02 2.64 16 37 H 0.12 2.44 5.76 -2.39 -0.01 2.43 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.06 1.97 8.07 -2.38 -0.02 1.95 16 40 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 41 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 42 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.12 1.70 6.37 -2.39 -0.02 1.68 16 45 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 Total: -1.00 -85.42 389.77 -0.77 -86.19 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 0.98 Total: 6.89 kcal Atomic # 6 Polarization: 17.70 SS G_CDS: 7.60 Total: 25.30 kcal Atomic # 7 Polarization: -115.05 SS G_CDS: -10.62 Total: -125.67 kcal Atomic # 8 Polarization: -39.36 SS G_CDS: -0.76 Total: -40.12 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -85.42 -0.77 -86.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330623959.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.076 kcal (2) G-P(sol) polarization free energy of solvation -85.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds