Wall clock time and date at job start Tue Mar 31 2020 21:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31130 * 126.55403 * 2 1 4 4 C 1.34490 * 105.61479 * 180.12512 * 3 2 1 5 5 C 1.50708 * 126.28569 * 179.90350 * 4 3 2 6 6 H 1.08999 * 109.50833 * 14.80065 * 5 4 3 7 7 C 1.53094 * 109.50644 * 254.71002 * 5 4 3 8 8 N 1.47014 * 109.25790 * 183.21967 * 7 5 4 9 9 C 1.46904 * 110.99898 * 182.39206 * 8 7 5 10 10 C 1.53001 * 109.47206 * 169.99653 * 9 8 7 11 11 C 1.50699 * 109.47045 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00406 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99563 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00229 * 0.02562 * 13 11 10 15 15 C 1.46499 * 119.99546 * 180.02562 * 13 11 10 16 16 C 1.50703 * 109.47349 * 270.00192 * 15 13 11 17 17 H 1.08007 * 119.99972 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00296 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00149 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00169 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47127 * 59.99529 * 20 18 16 22 22 H 1.48492 * 109.47421 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47070 * 300.00002 * 20 18 16 24 24 C 1.47011 * 110.75669 * 58.61685 * 8 7 5 25 25 C 1.53100 * 109.25547 * 301.38461 * 24 8 7 26 26 O 1.43015 * 109.50430 * 134.92978 * 5 4 3 27 27 N 1.29943 * 107.42740 * 359.63551 * 4 3 2 28 28 O 1.21297 * 110.25256 * 0.23237 * 27 4 3 29 29 H 1.08999 * 109.47320 * 180.25574 * 1 2 3 30 30 H 1.09004 * 109.46824 * 300.25151 * 1 2 3 31 31 H 1.08997 * 109.46893 * 60.24940 * 1 2 3 32 32 H 1.09003 * 109.51030 * 63.27814 * 7 5 4 33 33 H 1.09007 * 109.50815 * 303.15021 * 7 5 4 34 34 H 1.09004 * 109.47048 * 49.99778 * 9 8 7 35 35 H 1.09002 * 109.47315 * 289.99885 * 9 8 7 36 36 H 1.09004 * 109.47016 * 60.00104 * 10 9 8 37 37 H 1.09002 * 109.47172 * 300.00318 * 10 9 8 38 38 H 1.09002 * 109.47391 * 89.99442 * 14 13 11 39 39 H 1.09001 * 109.46813 * 329.99499 * 14 13 11 40 40 H 1.09004 * 109.47041 * 209.99626 * 14 13 11 41 41 H 1.08993 * 109.47560 * 30.00104 * 15 13 11 42 42 H 1.09000 * 109.47209 * 150.00790 * 15 13 11 43 43 H 0.96993 * 120.00222 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.50739 * 61.31351 * 24 8 7 45 45 H 1.08998 * 109.50901 * 181.45132 * 24 8 7 46 46 H 1.08996 * 109.50542 * 296.91686 * 25 24 8 47 47 H 1.09001 * 109.54368 * 176.80312 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5440 0.5727 -0.0028 5 6 4.8112 1.3886 -0.0060 6 1 4.5801 2.4209 0.2567 7 6 5.4437 1.3450 -1.3995 8 7 6.7180 2.0777 -1.3767 9 6 7.3316 2.1084 -2.7111 10 6 8.5142 3.0791 -2.7065 11 6 9.1440 3.1101 -4.0752 12 8 8.6913 2.4237 -4.9668 13 7 10.2098 3.9014 -4.3088 14 6 10.7563 4.7309 -3.2321 15 6 10.8217 3.9319 -5.6396 16 6 11.9005 2.8827 -5.7207 17 1 12.1091 2.2555 -4.8665 18 6 12.6211 2.7234 -6.8852 19 7 12.3667 3.4866 -7.9256 20 14 13.9578 1.4224 -6.9860 21 1 13.3638 0.0827 -6.7454 22 1 14.5781 1.4533 -8.3348 23 1 14.9936 1.6963 -5.9578 24 6 7.6366 1.4949 -0.3878 25 6 6.9820 1.5370 0.9956 26 8 5.7303 0.8468 0.9464 27 7 3.4645 -0.7242 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3634 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8878 31 1 -0.3633 0.5099 -0.8922 32 1 4.7699 1.8088 -2.1199 33 1 5.6249 0.3086 -1.6848 34 1 6.5939 2.4380 -3.4428 35 1 7.6821 1.1100 -2.9729 36 1 9.2520 2.7496 -1.9749 37 1 8.1638 4.0775 -2.4447 38 1 11.5203 4.1702 -2.6935 39 1 9.9566 5.0075 -2.5450 40 1 11.1986 5.6322 -3.6566 41 1 10.0613 3.7301 -6.3939 42 1 11.2573 4.9152 -5.8167 43 1 12.8734 3.3743 -8.7450 44 1 7.8527 0.4610 -0.6568 45 1 8.5633 2.0684 -0.3696 46 1 6.8147 2.5737 1.2876 47 1 7.6352 1.0548 1.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330623960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:51 Heat of formation + Delta-G solvation = 3.699773 kcal Electronic energy + Delta-G solvation = -29073.206212 eV Core-core repulsion = 24874.175523 eV Total energy + Delta-G solvation = -4199.030689 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.97380 -40.12044 -38.96118 -36.50823 -36.09490 -34.80123 -34.12481 -32.67111 -31.61891 -31.12665 -29.25720 -28.19072 -27.21715 -25.78333 -25.03142 -23.92031 -23.62081 -22.45527 -21.28177 -20.52845 -18.55135 -18.35193 -17.97106 -16.97003 -16.64580 -16.55671 -16.00201 -15.68462 -15.51290 -15.41136 -14.98338 -14.86863 -14.61578 -14.15342 -13.94661 -13.86051 -13.75546 -13.41323 -12.95740 -12.57692 -12.45294 -12.33914 -12.14244 -12.07161 -12.03137 -11.97189 -11.77288 -11.56587 -11.42639 -11.15347 -11.02803 -10.90488 -10.77638 -10.55386 -10.37027 -10.16220 -9.94271 -9.65493 -8.92413 -8.63403 -8.43768 -7.65254 -6.04750 -4.09510 0.79257 1.74455 2.45013 2.77713 3.30933 3.35008 3.35585 3.38996 3.44262 3.71196 3.80299 4.08718 4.40371 4.44912 4.55264 4.64659 4.71820 4.77884 4.79314 4.92594 4.98327 5.10648 5.14439 5.22586 5.24725 5.28012 5.32846 5.35435 5.47944 5.50607 5.58829 5.59745 5.68400 5.78698 5.90886 6.01692 6.05167 6.18387 6.62678 6.73086 6.75066 7.04691 7.43168 7.53490 7.82110 7.91269 8.22919 8.40591 8.89062 9.08244 9.55371 11.03314 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.001972 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.474603 B =14192.196449 C =14471.526990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.176 3.824 3 N -0.474 5.474 4 C 0.176 3.824 5 C 0.190 3.810 6 H 0.102 0.898 7 C 0.032 3.968 8 N -0.535 5.535 9 C 0.073 3.927 10 C -0.134 4.134 11 C 0.504 3.496 12 O -0.545 6.545 13 N -0.603 5.603 14 C 0.086 3.914 15 C 0.245 3.755 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.895 5.895 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.008 3.992 25 C 0.068 3.932 26 O -0.376 6.376 27 N -0.356 5.356 28 O 0.082 5.918 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.043 0.957 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.094 -2.419 20.890 29.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.044 4.044 3 N -0.209 5.209 4 C -0.098 4.098 5 C 0.130 3.870 6 H 0.119 0.881 7 C -0.097 4.097 8 N -0.260 5.260 9 C -0.055 4.055 10 C -0.175 4.175 11 C 0.291 3.709 12 O -0.423 6.423 13 N -0.335 5.335 14 C -0.059 4.059 15 C 0.126 3.874 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.142 4.142 19 N -0.534 5.534 20 Si 0.726 3.274 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.120 4.120 25 C -0.009 4.009 26 O -0.294 6.294 27 N -0.061 5.061 28 O 0.020 5.980 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.084 0.916 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -20.555 -2.478 20.472 29.116 hybrid contribution 1.097 -1.305 -0.482 1.772 sum -19.458 -3.783 19.990 28.152 Atomic orbital electron populations 1.20410 0.79965 1.05737 1.05806 1.28882 0.99004 0.80593 0.95949 1.71810 0.99718 1.28988 1.20373 1.25202 0.94401 0.88082 1.02069 1.19933 0.82487 0.94740 0.89806 0.88077 1.22645 0.92624 0.98313 0.96130 1.62195 1.03629 1.52344 1.07832 1.21841 0.96392 0.99075 0.88160 1.21636 0.97726 1.01664 0.96457 1.20248 0.80839 0.80358 0.89501 1.90671 1.63066 1.42073 1.46525 1.48154 1.29755 1.41823 1.13773 1.21630 0.98305 0.95327 0.90603 1.19299 0.93285 0.97153 0.77698 1.21385 1.17764 1.18604 0.98755 0.92619 1.24940 0.97542 0.96262 0.95420 1.69917 1.41222 1.39141 1.03114 0.86557 0.81609 0.82140 0.77100 1.20220 1.21137 1.20249 1.22931 0.97032 0.99362 0.92673 1.22765 0.83942 0.97742 0.96403 1.88007 1.25640 1.57216 1.58542 1.74710 0.96913 1.15615 1.18904 1.85351 1.11522 1.35854 1.65252 0.88368 0.87775 0.87685 0.88899 0.93179 0.89604 0.93414 0.89608 0.88648 0.93300 0.92435 0.91415 0.93869 0.95005 0.92654 0.93374 0.88600 0.91622 0.87692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.14 10.51 36.00 0.38 0.24 16 2 C 0.18 1.40 8.51 -13.06 -0.11 1.29 16 3 N -0.47 -5.11 11.55 -9.87 -0.11 -5.23 16 4 C 0.18 2.15 7.11 -156.38 -1.11 1.04 16 5 C 0.19 2.19 3.36 -27.83 -0.09 2.10 16 6 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 7 C 0.03 0.38 4.91 -3.71 -0.02 0.37 16 8 N -0.53 -6.35 4.73 -234.30 -1.11 -7.45 16 9 C 0.07 1.03 4.25 -3.82 -0.02 1.02 16 10 C -0.13 -1.93 4.19 -27.88 -0.12 -2.04 16 11 C 0.50 10.38 7.67 -10.98 -0.08 10.29 16 12 O -0.55 -13.70 15.56 5.56 0.09 -13.62 16 13 N -0.60 -12.77 2.86 -182.95 -0.52 -13.30 16 14 C 0.09 1.33 10.29 59.85 0.62 1.95 16 15 C 0.24 6.47 5.20 -5.19 -0.03 6.44 16 16 C -0.53 -15.10 9.39 -34.44 -0.32 -15.42 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 20 Si 0.90 22.09 29.54 -169.99 -5.02 17.06 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.01 0.08 5.44 -3.71 -0.02 0.06 16 25 C 0.07 0.63 7.01 37.21 0.26 0.89 16 26 O -0.38 -4.55 10.45 -35.23 -0.37 -4.92 16 27 N -0.36 -4.57 12.16 30.90 0.38 -4.20 16 28 O 0.08 0.84 11.31 18.08 0.20 1.04 16 29 H 0.10 0.03 8.14 -51.93 -0.42 -0.39 16 30 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 34 H 0.09 1.29 8.00 -51.93 -0.42 0.87 16 35 H 0.05 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.09 1.09 6.48 -51.93 -0.34 0.75 16 37 H 0.10 1.18 7.40 -51.93 -0.38 0.80 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.68 6.44 -51.93 -0.33 0.35 16 40 H 0.07 1.02 7.89 -51.93 -0.41 0.61 16 41 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 42 H 0.03 0.85 7.89 -51.93 -0.41 0.44 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.10 0.88 6.38 -51.93 -0.33 0.55 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 389.51 15.07 5.87 5.87 Total: -1.00 -36.88 389.51 -7.82 -44.70 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -7.20 Total: -3.73 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -0.76 Total: 9.85 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.63 Total: -56.26 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.08 Total: -17.49 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.88 -7.82 -44.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330623960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.398 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds