Wall clock time and date at job start Tue Mar 31 2020 21:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31130 * 126.55403 * 2 1 4 4 C 1.34490 * 105.61479 * 180.12512 * 3 2 1 5 5 C 1.50708 * 126.28569 * 179.90350 * 4 3 2 6 6 H 1.08999 * 109.50833 * 14.80065 * 5 4 3 7 7 C 1.53094 * 109.50644 * 254.71002 * 5 4 3 8 8 N 1.47014 * 109.25790 * 183.21967 * 7 5 4 9 9 C 1.46904 * 110.99898 * 182.39206 * 8 7 5 10 10 C 1.53001 * 109.47206 * 169.99653 * 9 8 7 11 11 C 1.50699 * 109.47045 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00406 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99563 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00229 * 0.02562 * 13 11 10 15 15 C 1.46499 * 119.99546 * 180.02562 * 13 11 10 16 16 C 1.50703 * 109.47349 * 270.00192 * 15 13 11 17 17 H 1.08007 * 119.99972 * 0.02562 * 16 15 13 18 18 C 1.37872 * 120.00296 * 180.02562 * 16 15 13 19 19 N 1.31512 * 120.00149 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00169 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47127 * 59.99529 * 20 18 16 22 22 H 1.48492 * 109.47421 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47070 * 300.00002 * 20 18 16 24 24 C 1.47011 * 110.75669 * 58.61685 * 8 7 5 25 25 C 1.53100 * 109.25547 * 301.38461 * 24 8 7 26 26 O 1.43015 * 109.50430 * 134.92978 * 5 4 3 27 27 N 1.29943 * 107.42740 * 359.63551 * 4 3 2 28 28 O 1.21297 * 110.25256 * 0.23237 * 27 4 3 29 29 H 1.08999 * 109.47320 * 180.25574 * 1 2 3 30 30 H 1.09004 * 109.46824 * 300.25151 * 1 2 3 31 31 H 1.08997 * 109.46893 * 60.24940 * 1 2 3 32 32 H 1.09003 * 109.51030 * 63.27814 * 7 5 4 33 33 H 1.09007 * 109.50815 * 303.15021 * 7 5 4 34 34 H 1.09004 * 109.47048 * 49.99778 * 9 8 7 35 35 H 1.09002 * 109.47315 * 289.99885 * 9 8 7 36 36 H 1.09004 * 109.47016 * 60.00104 * 10 9 8 37 37 H 1.09002 * 109.47172 * 300.00318 * 10 9 8 38 38 H 1.09002 * 109.47391 * 89.99442 * 14 13 11 39 39 H 1.09001 * 109.46813 * 329.99499 * 14 13 11 40 40 H 1.09004 * 109.47041 * 209.99626 * 14 13 11 41 41 H 1.08993 * 109.47560 * 30.00104 * 15 13 11 42 42 H 1.09000 * 109.47209 * 150.00790 * 15 13 11 43 43 H 0.96993 * 120.00222 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.50739 * 61.31351 * 24 8 7 45 45 H 1.08998 * 109.50901 * 181.45132 * 24 8 7 46 46 H 1.08996 * 109.50542 * 296.91686 * 25 24 8 47 47 H 1.09001 * 109.54368 * 176.80312 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5440 0.5727 -0.0028 5 6 4.8112 1.3886 -0.0060 6 1 4.5801 2.4209 0.2567 7 6 5.4437 1.3450 -1.3995 8 7 6.7180 2.0777 -1.3767 9 6 7.3316 2.1084 -2.7111 10 6 8.5142 3.0791 -2.7065 11 6 9.1440 3.1101 -4.0752 12 8 8.6913 2.4237 -4.9668 13 7 10.2098 3.9014 -4.3088 14 6 10.7563 4.7309 -3.2321 15 6 10.8217 3.9319 -5.6396 16 6 11.9005 2.8827 -5.7207 17 1 12.1091 2.2555 -4.8665 18 6 12.6211 2.7234 -6.8852 19 7 12.3667 3.4866 -7.9256 20 14 13.9578 1.4224 -6.9860 21 1 13.3638 0.0827 -6.7454 22 1 14.5781 1.4533 -8.3348 23 1 14.9936 1.6963 -5.9578 24 6 7.6366 1.4949 -0.3878 25 6 6.9820 1.5370 0.9956 26 8 5.7303 0.8468 0.9464 27 7 3.4645 -0.7242 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3634 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8878 31 1 -0.3633 0.5099 -0.8922 32 1 4.7699 1.8088 -2.1199 33 1 5.6249 0.3086 -1.6848 34 1 6.5939 2.4380 -3.4428 35 1 7.6821 1.1100 -2.9729 36 1 9.2520 2.7496 -1.9749 37 1 8.1638 4.0775 -2.4447 38 1 11.5203 4.1702 -2.6935 39 1 9.9566 5.0075 -2.5450 40 1 11.1986 5.6322 -3.6566 41 1 10.0613 3.7301 -6.3939 42 1 11.2573 4.9152 -5.8167 43 1 12.8734 3.3743 -8.7450 44 1 7.8527 0.4610 -0.6568 45 1 8.5633 2.0684 -0.3696 46 1 6.8147 2.5737 1.2876 47 1 7.6352 1.0548 1.7228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330623960.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:50 Heat of formation + Delta-G solvation = -26.195190 kcal Electronic energy + Delta-G solvation = -29074.502555 eV Core-core repulsion = 24874.175523 eV Total energy + Delta-G solvation = -4200.327032 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.76356 -41.12447 -40.48046 -37.46674 -36.95780 -36.55063 -34.79971 -34.75751 -32.69378 -32.11649 -29.90623 -29.72449 -28.40139 -27.26472 -26.09351 -25.18395 -24.63293 -23.74502 -22.33214 -21.39741 -19.95172 -19.32132 -18.77183 -18.72548 -18.13552 -17.52318 -17.18624 -17.11261 -16.84143 -16.36525 -16.30664 -16.01287 -15.64738 -15.48573 -14.99261 -14.77402 -14.32359 -14.19532 -14.12835 -13.86192 -13.78221 -13.52968 -13.45223 -13.40872 -13.14653 -13.01613 -12.85781 -12.79999 -12.72794 -12.54871 -12.41560 -12.21598 -12.20766 -11.96979 -11.76459 -11.72686 -11.11634 -10.79442 -10.66149 -10.62923 -9.65737 -9.43315 -8.24322 -6.39266 0.08757 0.96418 1.34100 1.38466 1.45723 1.82224 1.85288 2.04234 2.23156 2.37334 2.68049 2.95220 3.04858 3.12125 3.52806 3.70971 3.78904 3.81481 3.89210 3.99980 4.11078 4.21575 4.33580 4.38724 4.43378 4.46706 4.54090 4.58100 4.64903 4.66623 4.70828 4.80804 4.83954 4.86521 4.91564 4.94360 4.96318 5.04000 5.14464 5.21179 5.54425 5.65540 5.74323 5.82919 5.90545 6.04248 6.67415 6.78039 7.08384 7.26201 7.46930 8.82457 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020003 B = 0.001972 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.474603 B =14192.196449 C =14471.526990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.190 3.810 3 N -0.499 5.499 4 C 0.162 3.838 5 C 0.196 3.804 6 H 0.112 0.888 7 C 0.037 3.963 8 N -0.523 5.523 9 C 0.080 3.920 10 C -0.113 4.113 11 C 0.494 3.506 12 O -0.603 6.603 13 N -0.610 5.610 14 C 0.079 3.921 15 C 0.257 3.743 16 C -0.543 4.543 17 H 0.052 0.948 18 C 0.006 3.994 19 N -0.928 5.928 20 Si 0.967 3.033 21 H -0.280 1.280 22 H -0.278 1.278 23 H -0.259 1.259 24 C 0.004 3.996 25 C 0.067 3.933 26 O -0.395 6.395 27 N -0.389 5.389 28 O 0.079 5.921 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.021 0.979 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.058 0.942 39 H 0.104 0.896 40 H 0.069 0.931 41 H -0.004 1.004 42 H 0.025 0.975 43 H 0.267 0.733 44 H 0.031 0.969 45 H 0.117 0.883 46 H 0.084 0.916 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.356 -2.033 23.593 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 N -0.234 5.234 4 C -0.111 4.111 5 C 0.136 3.864 6 H 0.129 0.871 7 C -0.093 4.093 8 N -0.248 5.248 9 C -0.048 4.048 10 C -0.153 4.153 11 C 0.283 3.717 12 O -0.486 6.486 13 N -0.341 5.341 14 C -0.063 4.063 15 C 0.136 3.864 16 C -0.582 4.582 17 H 0.071 0.929 18 C -0.193 4.193 19 N -0.568 5.568 20 Si 0.791 3.209 21 H -0.205 1.205 22 H -0.203 1.203 23 H -0.183 1.183 24 C -0.123 4.123 25 C -0.009 4.009 26 O -0.314 6.314 27 N -0.096 5.096 28 O 0.017 5.983 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.138 0.862 32 H 0.112 0.888 33 H 0.047 0.953 34 H 0.090 0.910 35 H 0.039 0.961 36 H 0.132 0.868 37 H 0.147 0.853 38 H 0.077 0.923 39 H 0.122 0.878 40 H 0.088 0.912 41 H 0.014 0.986 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.135 0.865 46 H 0.102 0.898 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -20.821 -2.058 23.235 31.267 hybrid contribution 1.060 -1.414 -1.317 2.204 sum -19.761 -3.472 21.918 29.714 Atomic orbital electron populations 1.20822 0.75912 1.07889 1.07210 1.29995 1.00621 0.79317 0.92956 1.71821 0.99490 1.30038 1.22031 1.25426 0.95209 0.88184 1.02287 1.19901 0.82330 0.95114 0.89056 0.87051 1.22592 0.92804 0.97000 0.96890 1.62223 1.03666 1.52247 1.06615 1.21656 0.96193 0.97634 0.89325 1.21544 0.97722 1.03531 0.92508 1.21355 0.80139 0.78900 0.91320 1.90642 1.64621 1.44345 1.48957 1.48191 1.29937 1.42831 1.13179 1.21959 1.00188 0.94569 0.89562 1.18776 0.91579 0.96151 0.79918 1.21677 1.18446 1.19143 0.98940 0.92926 1.25879 1.00011 0.98451 0.94991 1.70039 1.42360 1.40690 1.03677 0.85475 0.78826 0.78688 0.77864 1.20523 1.20262 1.18304 1.23082 0.97668 0.98671 0.92900 1.22983 0.83075 0.98913 0.95885 1.87995 1.26665 1.58164 1.58555 1.74683 0.98360 1.16211 1.20395 1.85304 1.11111 1.36433 1.65424 0.85918 0.85959 0.86186 0.88835 0.95345 0.90957 0.96099 0.86821 0.85313 0.92292 0.87783 0.91229 0.98588 0.95703 0.92381 0.95080 0.86515 0.89821 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.13 10.51 71.23 0.75 0.62 16 2 C 0.19 2.82 8.51 88.38 0.75 3.58 16 3 N -0.50 -10.48 11.55 -303.20 -3.50 -13.99 16 4 C 0.16 3.98 7.11 138.47 0.98 4.96 16 5 C 0.20 4.42 3.36 29.88 0.10 4.52 16 6 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 7 C 0.04 0.88 4.91 86.31 0.42 1.30 16 8 N -0.52 -11.78 4.73 -895.19 -4.23 -16.01 16 9 C 0.08 2.26 4.25 86.30 0.37 2.62 16 10 C -0.11 -3.00 4.19 29.85 0.13 -2.87 16 11 C 0.49 20.35 7.67 87.66 0.67 21.02 16 12 O -0.60 -31.72 15.56 -3.02 -0.05 -31.76 16 13 N -0.61 -25.73 2.86 -851.13 -2.43 -28.16 16 14 C 0.08 2.25 10.29 127.77 1.31 3.56 16 15 C 0.26 14.07 5.20 85.63 0.45 14.52 16 16 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 17 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 18 C 0.01 0.33 5.46 84.65 0.46 0.79 16 19 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 20 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 24 C 0.00 0.09 5.44 86.32 0.47 0.55 16 25 C 0.07 1.08 7.01 72.02 0.50 1.59 16 26 O -0.40 -9.20 10.45 -148.98 -1.56 -10.76 16 27 N -0.39 -10.18 12.16 -60.33 -0.73 -10.91 16 28 O 0.08 1.58 11.31 74.77 0.85 2.43 16 29 H 0.12 -0.31 8.14 -2.39 -0.02 -0.33 16 30 H 0.12 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 33 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 35 H 0.02 0.69 8.08 -2.39 -0.02 0.67 16 36 H 0.11 2.45 6.48 -2.39 -0.02 2.43 16 37 H 0.13 2.64 7.40 -2.39 -0.02 2.62 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.10 1.99 6.44 -2.39 -0.02 1.98 16 40 H 0.07 1.96 7.89 -2.38 -0.02 1.94 16 41 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 42 H 0.02 1.37 7.89 -2.39 -0.02 1.35 16 43 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.12 1.72 6.38 -2.39 -0.02 1.70 16 46 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 47 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -85.52 389.51 -0.76 -86.28 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 0.98 Total: 6.70 kcal Atomic # 6 Polarization: 17.63 SS G_CDS: 7.61 Total: 25.24 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -10.61 Total: -125.62 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -0.76 Total: -40.09 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -85.52 -0.76 -86.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330623960.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.089 kcal (2) G-P(sol) polarization free energy of solvation -85.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds