Wall clock time and date at job start Tue Mar 31 2020 21:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31133 * 126.55126 * 2 1 4 4 C 1.34499 * 105.61488 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.28648 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.54061 * 344.88767 * 5 4 3 7 7 C 1.53089 * 109.50723 * 105.00232 * 5 4 3 8 8 N 1.47010 * 109.29517 * 176.80571 * 7 5 4 9 9 C 1.46898 * 111.00320 * 177.58330 * 8 7 5 10 10 H 1.08996 * 109.47366 * 56.09674 * 9 8 7 11 11 C 1.52995 * 109.47400 * 176.09842 * 9 8 7 12 12 C 1.50700 * 109.47202 * 296.09930 * 9 8 7 13 13 O 1.21283 * 120.00046 * 335.54487 * 12 9 8 14 14 N 1.34781 * 120.00177 * 155.54837 * 12 9 8 15 15 C 1.46497 * 119.99891 * 359.97438 * 14 12 9 16 16 C 1.46498 * 119.99744 * 179.97438 * 14 12 9 17 17 C 1.50704 * 109.47056 * 90.00154 * 16 14 12 18 18 H 1.07999 * 120.00201 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00235 * 179.97438 * 17 16 14 20 20 N 1.31520 * 119.99469 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00027 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47381 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47181 * 120.00215 * 21 19 17 24 24 H 1.48507 * 109.46973 * 239.99573 * 21 19 17 25 25 C 1.47015 * 110.75160 * 301.35911 * 8 7 5 26 26 C 1.53098 * 109.25442 * 58.61671 * 25 8 7 27 27 O 1.43008 * 109.26146 * 303.14776 * 26 25 8 28 28 N 1.29949 * 107.42211 * 0.24288 * 4 3 2 29 29 O 1.21293 * 110.24934 * 359.57575 * 28 4 3 30 30 H 1.09001 * 109.46595 * 90.00500 * 1 2 3 31 31 H 1.08997 * 109.47144 * 210.00119 * 1 2 3 32 32 H 1.09001 * 109.46872 * 330.00234 * 1 2 3 33 33 H 1.08993 * 109.51142 * 56.84159 * 7 5 4 34 34 H 1.09001 * 109.50584 * 296.75544 * 7 5 4 35 35 H 1.09006 * 109.47475 * 59.99860 * 11 9 8 36 36 H 1.09003 * 109.47647 * 179.97438 * 11 9 8 37 37 H 1.09003 * 109.47196 * 300.00026 * 11 9 8 38 38 H 1.09006 * 109.46784 * 90.00061 * 15 14 12 39 39 H 1.09000 * 109.47456 * 209.99766 * 15 14 12 40 40 H 1.08998 * 109.47477 * 330.00486 * 15 14 12 41 41 H 1.09003 * 109.47128 * 209.99355 * 16 14 12 42 42 H 1.08992 * 109.47650 * 330.00004 * 16 14 12 43 43 H 0.96999 * 119.99399 * 179.97438 * 20 19 17 44 44 H 1.08999 * 109.50370 * 178.54766 * 25 8 7 45 45 H 1.09000 * 109.50572 * 298.63631 * 25 8 7 46 46 H 1.08998 * 109.51026 * 63.09239 * 26 25 8 47 47 H 1.09011 * 109.50267 * 183.21535 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5442 0.5728 -0.0006 5 6 4.8112 1.3887 -0.0014 6 1 4.5807 2.4198 -0.2692 7 6 5.4440 1.3516 1.3922 8 7 6.7181 2.0846 1.3668 9 6 7.3309 2.1215 2.7013 10 1 7.4564 1.1042 3.0718 11 6 8.6968 2.8055 2.6166 12 6 6.4406 2.8922 3.6418 13 8 5.6667 3.7174 3.2046 14 7 6.5045 2.6647 4.9687 15 6 7.4390 1.6677 5.4967 16 6 5.6394 3.4144 5.8829 17 6 4.3434 2.6691 6.0726 18 1 4.1802 1.7311 5.5629 19 6 3.3658 3.1848 6.8970 20 7 3.5648 4.3269 7.5181 21 14 1.7592 2.2614 7.1316 22 1 1.7840 1.0127 6.3281 23 1 1.5875 1.9234 8.5673 24 1 0.6283 3.1143 6.6852 25 6 7.6373 1.4975 0.3811 26 6 6.9835 1.5332 -1.0028 27 8 5.7321 0.8429 -0.9513 28 7 3.4645 -0.7242 -0.0062 29 8 2.3030 -1.0735 -0.0005 30 1 -0.3632 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 5.6251 0.3167 1.6823 34 1 4.7699 1.8182 2.1105 35 1 8.5714 3.8230 2.2461 36 1 9.1514 2.8333 3.6070 37 1 9.3408 2.2480 1.9364 38 1 8.3937 2.1454 5.7172 39 1 7.0304 1.2341 6.4095 40 1 7.5885 0.8818 4.7564 41 1 6.1384 3.5263 6.8455 42 1 5.4342 4.3992 5.4634 43 1 2.8769 4.6898 8.0978 44 1 8.5639 2.0711 0.3607 45 1 7.8542 0.4651 0.6554 46 1 6.8162 2.5685 -1.2998 47 1 7.6376 1.0473 -1.7270 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330762046.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:54 Heat of formation + Delta-G solvation = -14.222456 kcal Electronic energy + Delta-G solvation = -30854.201894 eV Core-core repulsion = 26654.394039 eV Total energy + Delta-G solvation = -4199.807856 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.80795 -41.54399 -40.24104 -37.42684 -36.98418 -36.53447 -34.84637 -34.79230 -32.68386 -32.10395 -29.79955 -29.74880 -28.36703 -27.42821 -26.08960 -25.64654 -24.61849 -23.94205 -22.47751 -21.46093 -19.97091 -19.37137 -18.79266 -18.75474 -18.24870 -17.84657 -17.39935 -17.02322 -16.60875 -16.37031 -16.20065 -15.79218 -15.65910 -15.39131 -15.11834 -14.57706 -14.48347 -14.23110 -14.19034 -13.99836 -13.65836 -13.54625 -13.45864 -13.20699 -13.12145 -13.03820 -12.93160 -12.83386 -12.73150 -12.60677 -12.51441 -12.39210 -12.27463 -12.25084 -11.79177 -11.70735 -11.16443 -10.85775 -10.69117 -10.50000 -9.52130 -9.44782 -8.27179 -6.41999 0.02149 0.92245 1.30202 1.32875 1.44036 1.75228 1.79117 1.99525 2.16322 2.33761 2.60165 2.88565 3.01971 3.09051 3.45481 3.59777 3.70764 3.79423 3.83376 3.91954 4.08165 4.20522 4.29373 4.37996 4.38896 4.44388 4.48320 4.56867 4.58504 4.61889 4.67828 4.72723 4.83492 4.86553 4.88582 4.91635 4.97162 5.08116 5.17985 5.19978 5.50099 5.58164 5.75881 5.82627 5.88834 6.01438 6.64892 6.74495 7.01873 7.23890 7.46392 8.80074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007924 B = 0.004864 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3532.760582 B = 5755.188447 C = 8701.945393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.191 3.809 3 N -0.510 5.510 4 C 0.161 3.839 5 C 0.202 3.798 6 H 0.090 0.910 7 C 0.047 3.953 8 N -0.526 5.526 9 C 0.073 3.927 10 H 0.079 0.921 11 C -0.134 4.134 12 C 0.498 3.502 13 O -0.577 6.577 14 N -0.611 5.611 15 C 0.076 3.924 16 C 0.262 3.738 17 C -0.542 4.542 18 H 0.044 0.956 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.273 1.273 23 H -0.264 1.264 24 H -0.278 1.278 25 C 0.012 3.988 26 C 0.061 3.939 27 O -0.386 6.386 28 N -0.379 5.379 29 O 0.083 5.917 30 H 0.132 0.868 31 H 0.126 0.874 32 H 0.109 0.891 33 H 0.038 0.962 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.026 0.974 42 H -0.002 1.002 43 H 0.268 0.732 44 H 0.128 0.872 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.319 -11.743 -16.513 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.029 4.029 3 N -0.245 5.245 4 C -0.112 4.112 5 C 0.142 3.858 6 H 0.108 0.892 7 C -0.082 4.082 8 N -0.252 5.252 9 C -0.038 4.038 10 H 0.096 0.904 11 C -0.191 4.191 12 C 0.286 3.714 13 O -0.457 6.457 14 N -0.343 5.343 15 C -0.066 4.066 16 C 0.141 3.859 17 C -0.580 4.580 18 H 0.062 0.938 19 C -0.189 4.189 20 N -0.565 5.565 21 Si 0.788 3.212 22 H -0.197 1.197 23 H -0.189 1.189 24 H -0.203 1.203 25 C -0.114 4.114 26 C -0.015 4.015 27 O -0.305 6.305 28 N -0.086 5.086 29 O 0.021 5.979 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.016 0.984 43 H 0.077 0.923 44 H 0.145 0.855 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.552 -10.933 -16.859 20.847 hybrid contribution -1.050 -0.526 1.105 1.612 sum 4.502 -11.458 -15.754 19.994 Atomic orbital electron populations 1.20841 0.75825 1.07574 1.07627 1.29979 1.00641 0.79239 0.93005 1.71861 1.00070 1.30584 1.21936 1.25334 0.95019 0.88412 1.02476 1.19670 0.82767 0.94228 0.89168 0.89219 1.22385 0.93227 0.96253 0.96365 1.61818 1.03441 1.53342 1.06608 1.21718 0.95264 0.99128 0.87653 0.90380 1.21849 0.91633 1.01224 1.04433 1.21082 0.83637 0.83692 0.82987 1.90642 1.40919 1.37034 1.77057 1.48202 1.39588 1.40117 1.06441 1.21991 0.92675 0.91395 1.00529 1.18729 0.88660 0.90973 0.87569 1.21641 1.01948 1.07002 1.27442 0.93770 1.25817 1.02105 0.95864 0.95108 1.70048 1.35873 1.19930 1.30615 0.85433 0.78906 0.78393 0.78495 1.19744 1.18908 1.20339 1.23128 0.97181 0.99470 0.91641 1.23091 0.83198 0.98423 0.96803 1.87984 1.26637 1.57437 1.58429 1.74600 0.98295 1.15422 1.20282 1.85255 1.11081 1.36110 1.65436 0.84980 0.85550 0.87297 0.94340 0.92615 0.92330 0.90157 0.87616 0.90350 0.91538 0.89668 0.95613 0.98434 0.92273 0.85454 0.92822 0.91459 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.19 4.69 8.51 88.38 0.75 5.44 16 3 N -0.51 -16.92 11.55 -303.21 -3.50 -20.42 16 4 C 0.16 5.62 7.11 138.46 0.98 6.61 16 5 C 0.20 6.80 3.36 29.88 0.10 6.90 16 6 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 7 C 0.05 1.71 4.62 86.31 0.40 2.11 16 8 N -0.53 -16.10 4.27 -874.42 -3.74 -19.84 16 9 C 0.07 2.22 1.79 44.17 0.08 2.30 16 10 H 0.08 2.08 6.08 -2.39 -0.01 2.07 16 11 C -0.13 -2.88 8.66 71.98 0.62 -2.26 16 12 C 0.50 21.71 5.95 87.66 0.52 22.23 16 13 O -0.58 -31.50 15.22 -3.04 -0.05 -31.55 16 14 N -0.61 -26.86 2.86 -851.13 -2.43 -29.29 16 15 C 0.08 2.34 9.86 127.77 1.26 3.60 16 16 C 0.26 14.56 5.16 85.63 0.44 15.00 16 17 C -0.54 -32.27 9.39 25.60 0.24 -32.03 16 18 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 19 C 0.01 0.61 5.46 84.65 0.46 1.07 16 20 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 21 Si 0.96 45.90 29.54 68.60 2.03 47.92 16 22 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 C 0.01 0.25 5.14 86.31 0.44 0.70 16 26 C 0.06 1.21 7.01 72.01 0.50 1.72 16 27 O -0.39 -11.21 10.46 -148.98 -1.56 -12.77 16 28 N -0.38 -12.67 12.16 -60.33 -0.73 -13.41 16 29 O 0.08 2.30 11.31 74.87 0.85 3.15 16 30 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 34 H 0.06 2.54 6.54 -2.39 -0.02 2.53 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.08 1.56 7.57 -2.39 -0.02 1.55 16 37 H 0.11 1.43 6.27 -2.39 -0.01 1.42 16 38 H 0.08 1.92 7.96 -2.38 -0.02 1.90 16 39 H 0.07 2.15 8.07 -2.39 -0.02 2.13 16 40 H 0.08 2.09 5.86 -2.39 -0.01 2.08 16 41 H 0.03 1.44 8.07 -2.39 -0.02 1.42 16 42 H 0.00 -0.16 7.42 -2.39 -0.02 -0.18 16 43 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.13 1.80 6.06 -2.39 -0.01 1.78 16 45 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 47 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -87.69 383.81 -0.30 -88.00 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.99 Total: 11.25 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 7.56 Total: 33.44 kcal Atomic # 7 Polarization: -129.32 SS G_CDS: -10.12 Total: -139.44 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.76 Total: -41.17 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -87.69 -0.30 -88.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330762046.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.775 kcal (2) G-P(sol) polarization free energy of solvation -87.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds