Wall clock time and date at job start Tue Mar 31 2020 21:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31138 * 126.54822 * 2 1 4 4 C 1.34485 * 105.61326 * 180.02562 * 3 2 1 5 5 C 1.50709 * 126.28667 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.50488 * 15.10349 * 5 4 3 7 7 C 1.53097 * 109.50324 * 255.02330 * 5 4 3 8 8 N 1.47008 * 109.25812 * 183.21718 * 7 5 4 9 9 C 1.46906 * 111.00111 * 182.39336 * 8 7 5 10 10 H 1.08993 * 109.47431 * 45.90342 * 9 8 7 11 11 C 1.52997 * 109.46821 * 285.90376 * 9 8 7 12 12 C 1.50697 * 109.46905 * 165.90622 * 9 8 7 13 13 O 1.21276 * 120.00428 * 26.98437 * 12 9 8 14 14 N 1.34780 * 119.99772 * 206.98220 * 12 9 8 15 15 C 1.46507 * 120.00102 * 353.57256 * 14 12 9 16 16 C 1.46496 * 120.00271 * 173.56765 * 14 12 9 17 17 C 1.50699 * 109.47225 * 89.99956 * 16 14 12 18 18 H 1.08001 * 119.99809 * 0.02562 * 17 16 14 19 19 C 1.37876 * 120.00192 * 179.97438 * 17 16 14 20 20 N 1.31517 * 119.99996 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00081 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46877 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46852 * 120.00314 * 21 19 17 24 24 H 1.48490 * 109.47232 * 240.00276 * 21 19 17 25 25 C 1.47012 * 110.75443 * 58.61194 * 8 7 5 26 26 C 1.53096 * 109.26012 * 301.38457 * 25 8 7 27 27 O 1.43009 * 109.50826 * 135.24096 * 5 4 3 28 28 N 1.29948 * 107.42823 * 359.97438 * 4 3 2 29 29 O 1.21294 * 110.24953 * 0.02562 * 28 4 3 30 30 H 1.09002 * 109.46860 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47364 * 299.96901 * 1 2 3 32 32 H 1.08998 * 109.47378 * 59.97472 * 1 2 3 33 33 H 1.09003 * 109.50823 * 303.15056 * 7 5 4 34 34 H 1.09000 * 109.50870 * 63.23147 * 7 5 4 35 35 H 1.09001 * 109.46911 * 293.15142 * 11 9 8 36 36 H 1.09000 * 109.47449 * 53.15302 * 11 9 8 37 37 H 1.08996 * 109.47051 * 173.15117 * 11 9 8 38 38 H 1.08999 * 109.46808 * 84.62453 * 15 14 12 39 39 H 1.09001 * 109.47027 * 204.62565 * 15 14 12 40 40 H 1.08998 * 109.46818 * 324.62988 * 15 14 12 41 41 H 1.08999 * 109.47451 * 210.00506 * 16 14 12 42 42 H 1.09000 * 109.46885 * 330.00360 * 16 14 12 43 43 H 0.97003 * 119.99635 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.50535 * 61.32477 * 25 8 7 45 45 H 1.09004 * 109.50261 * 181.40650 * 25 8 7 46 46 H 1.08996 * 109.50484 * 176.78353 * 26 25 8 47 47 H 1.09004 * 109.50563 * 296.87195 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5440 0.5730 -0.0006 5 6 4.8111 1.3889 -0.0003 6 1 4.5801 2.4198 0.2682 7 6 5.4425 1.3530 -1.3945 8 7 6.7167 2.0857 -1.3688 9 6 7.3292 2.1238 -2.7035 10 1 6.5729 2.3869 -3.4430 11 6 7.9117 0.7488 -3.0368 12 6 8.4295 3.1534 -2.7221 13 8 9.0136 3.4353 -1.6973 14 7 8.7645 3.7609 -3.8776 15 6 8.1597 3.3224 -5.1379 16 6 9.7333 4.8598 -3.8734 17 6 11.1227 4.3052 -4.0552 18 1 11.2693 3.2407 -4.1634 19 6 12.2066 5.1569 -4.0843 20 7 12.0279 6.4533 -3.9530 21 14 13.9288 4.4695 -4.3103 22 1 13.8594 2.9914 -4.4344 23 1 14.5324 5.0414 -5.5407 24 1 14.7634 4.8295 -3.1361 25 6 7.6360 1.4976 -0.3838 26 6 6.9827 1.5321 1.0003 27 8 5.7311 0.8420 0.9483 28 7 3.4645 -0.7241 -0.0003 29 8 2.3030 -1.0735 -0.0002 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 5.6235 0.3183 -1.6856 34 1 4.7677 1.8201 -2.1118 35 1 8.7497 0.5385 -2.3722 36 1 7.1433 -0.0130 -2.9049 37 1 8.2570 0.7414 -4.0705 38 1 7.1979 3.8177 -5.2710 39 1 8.8191 3.5806 -5.9665 40 1 8.0121 2.2427 -5.1137 41 1 9.5068 5.5470 -4.6886 42 1 9.6756 5.3913 -2.9236 43 1 12.7906 7.0524 -3.9732 44 1 7.8521 0.4652 -0.6587 45 1 8.5631 2.0706 -0.3638 46 1 7.6368 1.0455 1.7237 47 1 6.8163 2.5672 1.2985 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330762048.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:02 Heat of formation + Delta-G solvation = -13.187068 kcal Electronic energy + Delta-G solvation = -30176.304898 eV Core-core repulsion = 25976.541940 eV Total energy + Delta-G solvation = -4199.762958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.74101 -41.61102 -40.21859 -37.44955 -36.95423 -36.50534 -34.77399 -34.74671 -32.36881 -32.11641 -29.70247 -29.68638 -28.23271 -27.41988 -26.20464 -25.65885 -24.60756 -24.05720 -22.58414 -21.20633 -19.99706 -19.30201 -18.70354 -18.67398 -18.18452 -17.62306 -17.29967 -16.95381 -16.45758 -16.26599 -16.12865 -16.01284 -15.61667 -15.52570 -14.95940 -14.70989 -14.20791 -14.17129 -14.15601 -14.05619 -13.66359 -13.53551 -13.48064 -13.29979 -13.13732 -13.02875 -12.96626 -12.79504 -12.61472 -12.56610 -12.49228 -12.34799 -12.17329 -12.15408 -11.74404 -11.67928 -11.15689 -10.90692 -10.65264 -10.34017 -9.48058 -9.38210 -8.22420 -6.36730 0.11307 0.98073 1.35005 1.37404 1.48884 1.75546 1.87514 2.03336 2.20134 2.39639 2.71618 2.98137 3.06920 3.13079 3.54286 3.56543 3.80932 3.83278 3.92898 4.00520 4.04140 4.16276 4.28751 4.32722 4.43510 4.47066 4.55146 4.55468 4.64079 4.66556 4.69065 4.70487 4.81123 4.88809 4.92266 4.96526 5.01793 5.09579 5.17077 5.22346 5.57140 5.69860 5.74491 5.85921 5.91344 6.06358 6.70269 6.79325 7.11310 7.28729 7.49316 8.84542 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.025650 B = 0.002348 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.367329 B =11921.854404 C =12269.119013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.192 3.808 3 N -0.501 5.501 4 C 0.166 3.834 5 C 0.189 3.811 6 H 0.097 0.903 7 C 0.041 3.959 8 N -0.526 5.526 9 C 0.077 3.923 10 H 0.127 0.873 11 C -0.172 4.172 12 C 0.509 3.491 13 O -0.576 6.576 14 N -0.610 5.610 15 C 0.074 3.926 16 C 0.262 3.738 17 C -0.536 4.536 18 H 0.052 0.948 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.269 1.269 24 H -0.282 1.282 25 C 0.007 3.993 26 C 0.073 3.927 27 O -0.388 6.388 28 N -0.383 5.383 29 O 0.082 5.918 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.051 0.949 34 H 0.104 0.896 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.087 0.913 41 H 0.024 0.976 42 H -0.004 1.004 43 H 0.267 0.733 44 H 0.048 0.952 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.280 -15.885 3.587 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.028 4.028 3 N -0.236 5.236 4 C -0.107 4.107 5 C 0.129 3.871 6 H 0.115 0.885 7 C -0.088 4.088 8 N -0.251 5.251 9 C -0.034 4.034 10 H 0.145 0.855 11 C -0.231 4.231 12 C 0.297 3.703 13 O -0.455 6.455 14 N -0.342 5.342 15 C -0.068 4.068 16 C 0.141 3.859 17 C -0.575 4.575 18 H 0.070 0.930 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.791 3.209 22 H -0.192 1.192 23 H -0.194 1.194 24 H -0.208 1.208 25 C -0.121 4.121 26 C -0.003 4.003 27 O -0.307 6.307 28 N -0.089 5.089 29 O 0.020 5.980 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.106 0.894 41 H 0.042 0.958 42 H 0.014 0.986 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.114 0.886 46 H 0.140 0.860 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -24.203 -15.297 4.360 28.962 hybrid contribution 1.550 -0.307 -0.357 1.620 sum -22.653 -15.604 4.003 27.797 Atomic orbital electron populations 1.20819 0.75908 1.07935 1.07149 1.29969 1.00556 0.79259 0.92974 1.71837 0.99565 1.30189 1.22019 1.25197 0.94769 0.88162 1.02606 1.19906 0.82699 0.94702 0.89822 0.88543 1.22651 0.91657 0.97949 0.96550 1.62004 1.04075 1.53283 1.05726 1.21625 0.95554 0.94224 0.92031 0.85548 1.22314 1.01887 0.95368 1.03524 1.20899 0.84129 0.82296 0.83002 1.90537 1.55576 1.65237 1.34182 1.48133 1.43000 1.35296 1.07751 1.22001 0.98559 1.01024 0.85168 1.18745 0.86716 0.84864 0.95577 1.21697 0.92678 0.93407 1.49734 0.93008 1.25848 1.03557 0.95090 0.94761 1.70058 1.32386 1.03467 1.50920 0.85387 0.78961 0.78607 0.77956 1.19231 1.19441 1.20834 1.23085 0.97867 0.98696 0.92458 1.22806 0.83401 0.97760 0.96363 1.87964 1.26140 1.57285 1.59290 1.74680 0.98306 1.15808 1.20156 1.85302 1.11066 1.36301 1.65317 0.85750 0.86305 0.86037 0.93090 0.87733 0.93178 0.89735 0.89696 0.90846 0.91102 0.89449 0.95765 0.98553 0.92450 0.93417 0.88563 0.85984 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.10 10.51 71.24 0.75 0.64 16 2 C 0.19 2.77 8.51 88.38 0.75 3.53 16 3 N -0.50 -10.84 11.55 -303.21 -3.50 -14.34 16 4 C 0.17 4.17 7.11 138.47 0.98 5.15 16 5 C 0.19 4.91 3.36 29.88 0.10 5.01 16 6 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 7 C 0.04 0.99 4.70 86.32 0.41 1.40 16 8 N -0.53 -15.54 4.55 -874.40 -3.98 -19.52 16 9 C 0.08 2.26 1.89 44.17 0.08 2.34 16 10 H 0.13 2.98 7.00 -2.39 -0.02 2.96 16 11 C -0.17 -4.32 8.01 71.98 0.58 -3.74 16 12 C 0.51 21.12 6.81 87.66 0.60 21.71 16 13 O -0.58 -29.34 13.62 -3.02 -0.04 -29.38 16 14 N -0.61 -25.81 2.86 -851.13 -2.43 -28.24 16 15 C 0.07 2.19 9.61 127.77 1.23 3.41 16 16 C 0.26 14.20 5.09 85.63 0.44 14.64 16 17 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 18 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 19 C 0.01 0.36 5.46 84.65 0.46 0.82 16 20 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 21 Si 0.97 45.28 29.54 68.60 2.03 47.31 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 25 C 0.01 0.20 4.61 86.31 0.40 0.60 16 26 C 0.07 1.96 7.01 72.01 0.50 2.46 16 27 O -0.39 -11.07 10.45 -148.98 -1.56 -12.63 16 28 N -0.38 -9.70 12.16 -60.34 -0.73 -10.44 16 29 O 0.08 1.57 11.31 74.86 0.85 2.42 16 30 H 0.12 -0.40 8.14 -2.39 -0.02 -0.42 16 31 H 0.12 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.12 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.05 1.24 6.78 -2.39 -0.02 1.22 16 34 H 0.10 2.21 8.05 -2.39 -0.02 2.19 16 35 H 0.05 1.47 6.80 -2.39 -0.02 1.45 16 36 H 0.08 1.76 6.69 -2.39 -0.02 1.75 16 37 H 0.08 1.90 6.38 -2.39 -0.02 1.89 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 40 H 0.09 1.99 5.37 -2.39 -0.01 1.98 16 41 H 0.02 1.33 8.07 -2.39 -0.02 1.31 16 42 H 0.00 -0.23 7.52 -2.39 -0.02 -0.25 16 43 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 44 H 0.05 1.39 6.51 -2.39 -0.02 1.37 16 45 H 0.10 3.64 5.46 -2.39 -0.01 3.63 16 46 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16 47 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -81.26 378.48 -0.58 -81.84 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.99 Total: 11.94 kcal Atomic # 6 Polarization: 19.68 SS G_CDS: 7.52 Total: 27.20 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -10.36 Total: -128.69 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -0.75 Total: -39.59 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -81.26 -0.58 -81.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330762048.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.657 kcal (2) G-P(sol) polarization free energy of solvation -81.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds